© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1675.t1 |
| Gene name | |
| Location | scaffold_02:568062..568732 |
| Strand | - |
| Gene length (bp) | 670 |
| Transcript length (bp) | 621 |
| Coding sequence length (bp) | 621 |
| Protein length (aa) | 207 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF11807 | UstYa | Mycotoxin biosynthesis protein UstYa | 8.9E-20 | 95 | 189 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0043386 | mycotoxin biosynthetic process | Yes |
| GO:0009403 | toxin biosynthetic process | No |
| GO:0008150 | biological_process | No |
| GO:0009987 | cellular process | No |
| GO:0009404 | toxin metabolic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0044550 | secondary metabolite biosynthetic process | No |
| GO:0019748 | secondary metabolic process | No |
| GO:0043385 | mycotoxin metabolic process | No |
| GO:0009058 | biosynthetic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 13 | 35 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 20.06 | 7.13 | 33.00 |
| 5d_25C | Five days - 25 degrees Celsius | 31.03 | 12.93 | 49.13 |
| 7d_25C | Seven days - 25 degrees Celsius | 30.89 | 11.90 | 49.88 |
| 10d_25C | Ten days - 25 degrees Celsius | 12.68 | 3.35 | 22.02 |
| 7d_15C | Seven days - 15 degrees Celsius | 79.39 | 35.50 | 123.27 |
| 7d_30C | Seven days - 30 degrees Celsius | 49.65 | 23.00 | 76.30 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.216805 | no |
| 3d_25C | 7d_25C | 0.233143 | no |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.002761 | yes |
| 3d_25C | 10d_25C | 0.244357 | no |
| 5d_25C | 7d_25C | 0.993448 | no |
| 5d_25C | 7d_15C | 0.000700 | yes |
| 5d_25C | 7d_30C | 0.135543 | no |
| 5d_25C | 10d_25C | 0.009770 | yes |
| 7d_25C | 7d_15C | 0.001278 | yes |
| 7d_25C | 7d_30C | 0.139016 | no |
| 7d_25C | 10d_25C | 0.011993 | yes |
| 7d_15C | 7d_30C | 0.124909 | no |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1675.t1 MFPKSVTRLSGPYLGLLAALSVCLILNLGALFFSLRILIRGTRGYTYLAGDRPRELPIKVRTIQAAFHDDPSHYG MEGITATAEWNAIRPPGKGFVFLGEEHFAFDVSMWHQMHCLNHIRAVLVNGDDGSDHTAHCFHYLRQGILCAADT TLESGGTNMKLANGDKVATGGGTVHTCRDWRQVHDWMENQHKEWTPEMYTRFQESS* |
| Coding | >Pro_DTO377G3_2|g1675.t1 ATGTTCCCTAAGTCCGTGACCCGATTAAGCGGCCCCTACCTCGGCCTTCTCGCAGCGCTGAGCGTATGCCTCATC CTGAATCTGGGCGCCCTCTTCTTCTCACTCCGCATCTTAATACGCGGAACGCGGGGATACACCTACCTCGCCGGC GACCGACCTCGTGAGCTCCCCATAAAGGTCCGCACCATCCAAGCCGCCTTCCACGACGACCCCTCCCATTACGGT ATGGAAGGCATCACGGCCACGGCTGAATGGAACGCAATCCGCCCTCCCGGCAAGGGTTTCGTTTTTCTAGGGGAG GAGCACTTCGCATTTGATGTGTCGATGTGGCACCAGATGCATTGCCTTAACCATATACGCGCGGTGCTTGTTAAT GGGGACGACGGGTCGGACCATACGGCGCACTGCTTCCATTACCTACGGCAGGGCATTCTCTGCGCCGCTGACACA ACCCTAGAGTCGGGCGGCACGAACATGAAATTGGCTAATGGGGATAAAGTTGCTACGGGCGGAGGGACCGTACAT ACCTGCCGGGACTGGAGACAGGTGCATGATTGGATGGAAAACCAGCATAAGGAGTGGACACCAGAAATGTATACA AGGTTTCAGGAGTCGAGTTAA |
| Transcript | >Pro_DTO377G3_2|g1675.t1 ATGTTCCCTAAGTCCGTGACCCGATTAAGCGGCCCCTACCTCGGCCTTCTCGCAGCGCTGAGCGTATGCCTCATC CTGAATCTGGGCGCCCTCTTCTTCTCACTCCGCATCTTAATACGCGGAACGCGGGGATACACCTACCTCGCCGGC GACCGACCTCGTGAGCTCCCCATAAAGGTCCGCACCATCCAAGCCGCCTTCCACGACGACCCCTCCCATTACGGT ATGGAAGGCATCACGGCCACGGCTGAATGGAACGCAATCCGCCCTCCCGGCAAGGGTTTCGTTTTTCTAGGGGAG GAGCACTTCGCATTTGATGTGTCGATGTGGCACCAGATGCATTGCCTTAACCATATACGCGCGGTGCTTGTTAAT GGGGACGACGGGTCGGACCATACGGCGCACTGCTTCCATTACCTACGGCAGGGCATTCTCTGCGCCGCTGACACA ACCCTAGAGTCGGGCGGCACGAACATGAAATTGGCTAATGGGGATAAAGTTGCTACGGGCGGAGGGACCGTACAT ACCTGCCGGGACTGGAGACAGGTGCATGATTGGATGGAAAACCAGCATAAGGAGTGGACACCAGAAATGTATACA AGGTTTCAGGAGTCGAGTTAA |
| Gene | >Pro_DTO377G3_2|g1675.t1 ATGTTCCCTAAGTCCGTGACCCGATTAAGCGGCCCCTACCTCGGCCTTCTCGCAGCGCTGAGCGTATGCCTCATC CTGAATCTGGGCGCCCTCTTCTTCTCACTCCGCATCTTAATACGCGGAACGCGGGGATACAGTGCGCCATAATCC TGATTCTCCTCTCACTCATGACTAACGCACAGCAGCCTACCTCGCCGGCGACCGACCTCGTGAGCTCCCCATAAA GGTCCGCACCATCCAAGCCGCCTTCCACGACGACCCCTCCCATTACGGTATGGAAGGCATCACGGCCACGGCTGA ATGGAACGCAATCCGCCCTCCCGGCAAGGGTTTCGTTTTTCTAGGGGAGGAGCACTTCGCATTTGATGTGTCGAT GTGGCACCAGATGCATTGCCTTAACCATATACGCGCGGTGCTTGTTAATGGGGACGACGGGTCGGACCATACGGC GCACTGCTTCCATTACCTACGGCAGGGCATTCTCTGCGCCGCTGACACAACCCTAGAGTCGGGCGGCACGAACAT GAAATTGGCTAATGGGGATAAAGTTGCTACGGGCGGAGGGACCGTACATACCTGCCGGGACTGGAGACAGGTGCA TGATTGGATGGAAAACCAGCATAAGGAGTGGACACCAGAAATGTATACAAGGTTTCAGGAGTCGAGTTAA |