© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1672.t1 |
| Gene name | |
| Location | scaffold_02:563081..564140 |
| Strand | + |
| Gene length (bp) | 1059 |
| Transcript length (bp) | 861 |
| Coding sequence length (bp) | 861 |
| Protein length (aa) | 287 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.0E-12 | 83 | 153 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 50 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 9.54 | 3.03 | 16.05 |
| 5d_25C | Five days - 25 degrees Celsius | 4.53 | 0.93 | 8.14 |
| 7d_25C | Seven days - 25 degrees Celsius | 3.78 | 0.52 | 7.04 |
| 10d_25C | Ten days - 25 degrees Celsius | 2.43 | 0.12 | 4.74 |
| 7d_15C | Seven days - 15 degrees Celsius | 2.94 | 0.16 | 5.72 |
| 7d_30C | Seven days - 30 degrees Celsius | 3.87 | 0.71 | 7.03 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.077844 | no |
| 3d_25C | 7d_25C | 0.033043 | yes |
| 3d_25C | 7d_15C | 0.012904 | yes |
| 3d_25C | 7d_30C | 0.027043 | yes |
| 3d_25C | 10d_25C | 0.003625 | yes |
| 5d_25C | 7d_25C | 0.767247 | no |
| 5d_25C | 7d_15C | 0.442370 | no |
| 5d_25C | 7d_30C | 0.792140 | no |
| 5d_25C | 10d_25C | 0.228516 | no |
| 7d_25C | 7d_15C | 0.704106 | no |
| 7d_25C | 7d_30C | 0.976712 | no |
| 7d_25C | 10d_25C | 0.448839 | no |
| 7d_15C | 7d_30C | 0.662459 | no |
| 7d_15C | 10d_25C | 0.795887 | no |
| 7d_30C | 10d_25C | 0.405721 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1672.t1 MNDIESPRLEEQQTPTKSPFANVRPDGRAFNSPNWRMKVASPTPSRTNASPSPSPNPNPNTSRAAFSRPGAHVPQ AINDGRRLYVGNMPYTAKMEDVEALFIAAEFPIERIDIAIDPFTGRNPSYCFVDLQSKEHAERAMTELNGRDMLG RPVKIKPGVAKSQERTQNPPEPFRIDRWRQQERPSFAKVNSDSSNRVYVGGLPRLTDHGAVQSNIELFFRGFKVE NVSKVFAPHPAKRFDPGEHYYLFVDVGTPEQAQKAMDTLNGQQGPWGGPLRVQFARGPKDA* |
| Coding | >Pro_DTO377G3_2|g1672.t1 ATGAATGATATCGAGAGCCCCAGACTGGAGGAGCAACAGACTCCTACCAAGTCTCCCTTTGCAAATGTCCGTCCC GATGGTCGAGCCTTCAACTCTCCCAATTGGCGCATGAAGGTTGCAAGCCCAACACCATCGCGCACCAATGCTAGC CCGAGCCCGAGCCCCAACCCTAACCCCAATACCTCCCGCGCAGCCTTCAGCCGGCCCGGAGCGCACGTCCCCCAA GCGATTAACGATGGGCGCCGCCTATACGTCGGCAATATGCCATACACGGCCAAGATGGAGGATGTGGAGGCGCTG TTCATAGCGGCCGAGTTCCCTATCGAGCGCATAGATATTGCCATTGATCCTTTTACCGGCCGGAACCCCTCCTAC TGCTTTGTCGACCTACAGAGCAAGGAGCATGCCGAGCGCGCCATGACCGAGCTCAATGGCCGCGATATGCTGGGT CGCCCTGTCAAGATCAAGCCCGGTGTCGCCAAGTCTCAGGAGCGCACTCAGAACCCGCCTGAGCCATTCCGCATT GATCGTTGGCGCCAGCAAGAGAGACCTAGTTTTGCGAAGGTCAACAGTGACTCCAGCAACCGCGTGTACGTCGGT GGTCTGCCGCGCTTGACCGACCACGGGGCTGTGCAGAGCAACATCGAGCTTTTCTTCCGAGGATTCAAGGTTGAG AATGTCAGCAAGGTCTTCGCTCCCCACCCCGCTAAGCGGTTCGATCCGGGCGAGCACTACTATCTGTTCGTTGAT GTGGGTACTCCCGAGCAAGCCCAGAAAGCTATGGATACACTGAATGGTCAGCAAGGACCATGGGGTGGTCCGCTG CGCGTCCAGTTCGCTCGTGGTCCCAAGGATGCCTGA |
| Transcript | >Pro_DTO377G3_2|g1672.t1 ATGAATGATATCGAGAGCCCCAGACTGGAGGAGCAACAGACTCCTACCAAGTCTCCCTTTGCAAATGTCCGTCCC GATGGTCGAGCCTTCAACTCTCCCAATTGGCGCATGAAGGTTGCAAGCCCAACACCATCGCGCACCAATGCTAGC CCGAGCCCGAGCCCCAACCCTAACCCCAATACCTCCCGCGCAGCCTTCAGCCGGCCCGGAGCGCACGTCCCCCAA GCGATTAACGATGGGCGCCGCCTATACGTCGGCAATATGCCATACACGGCCAAGATGGAGGATGTGGAGGCGCTG TTCATAGCGGCCGAGTTCCCTATCGAGCGCATAGATATTGCCATTGATCCTTTTACCGGCCGGAACCCCTCCTAC TGCTTTGTCGACCTACAGAGCAAGGAGCATGCCGAGCGCGCCATGACCGAGCTCAATGGCCGCGATATGCTGGGT CGCCCTGTCAAGATCAAGCCCGGTGTCGCCAAGTCTCAGGAGCGCACTCAGAACCCGCCTGAGCCATTCCGCATT GATCGTTGGCGCCAGCAAGAGAGACCTAGTTTTGCGAAGGTCAACAGTGACTCCAGCAACCGCGTGTACGTCGGT GGTCTGCCGCGCTTGACCGACCACGGGGCTGTGCAGAGCAACATCGAGCTTTTCTTCCGAGGATTCAAGGTTGAG AATGTCAGCAAGGTCTTCGCTCCCCACCCCGCTAAGCGGTTCGATCCGGGCGAGCACTACTATCTGTTCGTTGAT GTGGGTACTCCCGAGCAAGCCCAGAAAGCTATGGATACACTGAATGGTCAGCAAGGACCATGGGGTGGTCCGCTG CGCGTCCAGTTCGCTCGTGGTCCCAAGGATGCCTGA |
| Gene | >Pro_DTO377G3_2|g1672.t1 ATGAATGATATCGAGAGCCCCAGACTGGAGGAGCAACAGAGTAAGATCGTCCTCAGAAAATACCCCAAAAAGTCT CGACTAATCGATATCTACATTATACAGCTCCTACCAAGTCTCCCTTTGCAAATGTCCGTCCCGATGGTCGAGCCT TCAACTCTCCCAATTGGCGCATGAAGGTTGCAAGCCCAACACCATCGCGCACCAATGCTAGCCCGAGCCCGAGCC CCAACCCTAACCCCAATACCTCCCGCGCAGCCTTCAGCCGGCCCGGAGCGCACGTCCCCCAAGCGATTAACGATG GGCGCCGCCTATACGTCGGCAATATGCCATACACGGCCAAGATGGAGGATGTGGAGGCGCTGTTCATAGCGGCCG AGTTCCCTATGTATGCCTGCACCACTTGAAACCTGCTGGCCCAGCCGTGAATCGTCGTCAACTGAACAACCCCCG AAAATAGCGAGCGCATAGATATTGCCATTGATCCTTTTACCGGCCGGAACCCCTCCTACTGCTTTGTCGACCTAC AGAGCAAGGAGCATGCCGAGCGCGCCATGACCGAGCTCAATGGCCGCGATATGCTGGGTCGCCCTGTCAAGATCA AGCCCGGTGTCGCCAAGTCTCAGGAGCGCACTCAGAACCCGCCTGAGCCATTCCGCATTGATCGTTGGCGCCAGC AAGAGAGACCTAGTTTTGCGAAGGTCAACAGTGACTCCAGCAACCGCGTGTACGTCGGTGGTCTGCCGCGCTTGA CCGACCACGGGGCTGTGCAGAGCAACATCGAGCTTTTCTTCCGAGGATTCAAGGTGTAAGTTTGGATGGCTTGGG TTTCTGCTATCGTGTGATCAGTACTGATGCGCTGTGGTTTGCAGTGAGAATGTCAGCAAGGTCTTCGCTCCCCAC CCCGCTAAGCGGTTCGATCCGGGCGAGCACTACTATCTGTTCGTTGATGTGGGTACTCCCGAGCAAGCCCAGAAA GCTATGGATACACTGAATGGTCAGCAAGGACCATGGGGTGGTCCGCTGCGCGTCCAGTTCGCTCGTGGTCCCAAG GATGCCTGA |