© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1664.t1 |
| Gene name | |
| Location | scaffold_02:548913..549906 |
| Strand | + |
| Gene length (bp) | 993 |
| Transcript length (bp) | 993 |
| Coding sequence length (bp) | 993 |
| Protein length (aa) | 331 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 18 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 25 | 47 | 22 |
| 2 | 54 | 76 | 22 |
| 3 | 86 | 108 | 22 |
| 4 | 127 | 149 | 22 |
| 5 | 204 | 226 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 18.58 | 8.06 | 29.11 |
| 5d_25C | Five days - 25 degrees Celsius | 18.47 | 8.11 | 28.83 |
| 7d_25C | Seven days - 25 degrees Celsius | 20.81 | 9.42 | 32.20 |
| 10d_25C | Ten days - 25 degrees Celsius | 29.18 | 14.51 | 43.86 |
| 7d_15C | Seven days - 15 degrees Celsius | 12.90 | 4.95 | 20.85 |
| 7d_30C | Seven days - 30 degrees Celsius | 21.94 | 10.14 | 33.74 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.990025 | no |
| 3d_25C | 7d_25C | 0.784022 | no |
| 3d_25C | 7d_15C | 0.287882 | no |
| 3d_25C | 7d_30C | 0.670335 | no |
| 3d_25C | 10d_25C | 0.127752 | no |
| 5d_25C | 7d_25C | 0.770831 | no |
| 5d_25C | 7d_15C | 0.301341 | no |
| 5d_25C | 7d_30C | 0.657520 | no |
| 5d_25C | 10d_25C | 0.122452 | no |
| 7d_25C | 7d_15C | 0.132803 | no |
| 7d_25C | 7d_30C | 0.908063 | no |
| 7d_25C | 10d_25C | 0.269326 | no |
| 7d_15C | 7d_30C | 0.100042 | no |
| 7d_15C | 10d_25C | 0.005626 | yes |
| 7d_30C | 10d_25C | 0.377315 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1664.t1 MSDVPLDMLNGISGALAKEGDVRQMILVAFIGLSCYNVAELIVLVPATFRRWRGLYFWALLVSGVLGVVPYSVGF LMKFFTHTDSVLSVTVLTIGWWTMVTGQSVVLYSRLHLVLRDERVLRRVLQLIVANIFLLHVPTTILTYGANIVH SGDDAWINGYNIMEKIQLTGFTIQESLLSTLYVIETVKLLRLGADVSSRPDARSIMYQLIGINCAIIAMDLVLLS LEYADLYAAQITVKGFIYSLKLKLEFAVLGRLVDLIQGSRHPISIAIADTLPLCSMQRPPETPDRGDDVLYEQAE PKDFLAPPVGGRVVQRRMFVESGRTALLAI* |
| Coding | >Pro_DTO377G3_2|g1664.t1 ATGTCCGACGTTCCCCTGGACATGCTGAACGGGATATCCGGTGCGCTCGCGAAAGAAGGCGACGTACGACAGATG ATCCTCGTCGCCTTCATCGGACTATCATGCTACAACGTCGCCGAGCTAATTGTCCTCGTGCCAGCCACATTCCGC CGGTGGCGCGGGCTCTATTTCTGGGCCCTGCTCGTCTCAGGCGTGCTCGGCGTGGTACCATACTCGGTCGGCTTC CTGATGAAGTTCTTTACTCACACGGACTCCGTGCTGTCGGTTACTGTCCTGACTATCGGCTGGTGGACGATGGTG ACGGGCCAATCCGTGGTGCTGTACTCACGGCTGCACCTTGTGCTACGAGACGAGCGCGTGCTGCGCCGTGTATTG CAGCTCATCGTCGCGAATATCTTTCTCCTGCACGTGCCCACGACGATCCTCACTTACGGCGCGAATATAGTGCAC AGCGGCGACGACGCCTGGATCAACGGGTACAATATCATGGAGAAGATCCAGCTGACCGGGTTCACGATCCAAGAG AGTCTGCTGTCAACGCTGTATGTGATTGAGACGGTCAAGCTGCTGCGCCTTGGCGCGGATGTGTCCTCGCGCCCG GATGCACGGAGCATCATGTACCAGCTGATCGGGATCAACTGCGCGATCATAGCGATGGATTTGGTGCTTTTGAGT CTTGAATATGCCGATCTGTACGCCGCGCAAATCACCGTAAAGGGTTTCATTTACTCGCTCAAACTCAAGCTTGAG TTTGCTGTGCTTGGTCGTCTGGTGGATCTCATTCAGGGGTCTAGACATCCTATCTCCATCGCTATTGCCGATACG TTGCCTCTTTGCTCGATGCAGAGGCCGCCCGAGACGCCTGATCGCGGCGACGATGTGCTTTACGAGCAGGCTGAG CCGAAGGACTTTTTGGCTCCGCCGGTCGGAGGCCGAGTTGTTCAGAGGAGGATGTTTGTGGAGTCTGGAAGGACG GCTTTATTAGCAATATGA |
| Transcript | >Pro_DTO377G3_2|g1664.t1 ATGTCCGACGTTCCCCTGGACATGCTGAACGGGATATCCGGTGCGCTCGCGAAAGAAGGCGACGTACGACAGATG ATCCTCGTCGCCTTCATCGGACTATCATGCTACAACGTCGCCGAGCTAATTGTCCTCGTGCCAGCCACATTCCGC CGGTGGCGCGGGCTCTATTTCTGGGCCCTGCTCGTCTCAGGCGTGCTCGGCGTGGTACCATACTCGGTCGGCTTC CTGATGAAGTTCTTTACTCACACGGACTCCGTGCTGTCGGTTACTGTCCTGACTATCGGCTGGTGGACGATGGTG ACGGGCCAATCCGTGGTGCTGTACTCACGGCTGCACCTTGTGCTACGAGACGAGCGCGTGCTGCGCCGTGTATTG CAGCTCATCGTCGCGAATATCTTTCTCCTGCACGTGCCCACGACGATCCTCACTTACGGCGCGAATATAGTGCAC AGCGGCGACGACGCCTGGATCAACGGGTACAATATCATGGAGAAGATCCAGCTGACCGGGTTCACGATCCAAGAG AGTCTGCTGTCAACGCTGTATGTGATTGAGACGGTCAAGCTGCTGCGCCTTGGCGCGGATGTGTCCTCGCGCCCG GATGCACGGAGCATCATGTACCAGCTGATCGGGATCAACTGCGCGATCATAGCGATGGATTTGGTGCTTTTGAGT CTTGAATATGCCGATCTGTACGCCGCGCAAATCACCGTAAAGGGTTTCATTTACTCGCTCAAACTCAAGCTTGAG TTTGCTGTGCTTGGTCGTCTGGTGGATCTCATTCAGGGGTCTAGACATCCTATCTCCATCGCTATTGCCGATACG TTGCCTCTTTGCTCGATGCAGAGGCCGCCCGAGACGCCTGATCGCGGCGACGATGTGCTTTACGAGCAGGCTGAG CCGAAGGACTTTTTGGCTCCGCCGGTCGGAGGCCGAGTTGTTCAGAGGAGGATGTTTGTGGAGTCTGGAAGGACG GCTTTATTAGCAATATGA |
| Gene | >Pro_DTO377G3_2|g1664.t1 ATGTCCGACGTTCCCCTGGACATGCTGAACGGGATATCCGGTGCGCTCGCGAAAGAAGGCGACGTACGACAGATG ATCCTCGTCGCCTTCATCGGACTATCATGCTACAACGTCGCCGAGCTAATTGTCCTCGTGCCAGCCACATTCCGC CGGTGGCGCGGGCTCTATTTCTGGGCCCTGCTCGTCTCAGGCGTGCTCGGCGTGGTACCATACTCGGTCGGCTTC CTGATGAAGTTCTTTACTCACACGGACTCCGTGCTGTCGGTTACTGTCCTGACTATCGGCTGGTGGACGATGGTG ACGGGCCAATCCGTGGTGCTGTACTCACGGCTGCACCTTGTGCTACGAGACGAGCGCGTGCTGCGCCGTGTATTG CAGCTCATCGTCGCGAATATCTTTCTCCTGCACGTGCCCACGACGATCCTCACTTACGGCGCGAATATAGTGCAC AGCGGCGACGACGCCTGGATCAACGGGTACAATATCATGGAGAAGATCCAGCTGACCGGGTTCACGATCCAAGAG AGTCTGCTGTCAACGCTGTATGTGATTGAGACGGTCAAGCTGCTGCGCCTTGGCGCGGATGTGTCCTCGCGCCCG GATGCACGGAGCATCATGTACCAGCTGATCGGGATCAACTGCGCGATCATAGCGATGGATTTGGTGCTTTTGAGT CTTGAATATGCCGATCTGTACGCCGCGCAAATCACCGTAAAGGGTTTCATTTACTCGCTCAAACTCAAGCTTGAG TTTGCTGTGCTTGGTCGTCTGGTGGATCTCATTCAGGGGTCTAGACATCCTATCTCCATCGCTATTGCCGATACG TTGCCTCTTTGCTCGATGCAGAGGCCGCCCGAGACGCCTGATCGCGGCGACGATGTGCTTTACGAGCAGGCTGAG CCGAAGGACTTTTTGGCTCCGCCGGTCGGAGGCCGAGTTGTTCAGAGGAGGATGTTTGTGGAGTCTGGAAGGACG GCTTTATTAGCAATATGA |