© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1662.t1 |
| Gene name | |
| Location | scaffold_02:545384..546671 |
| Strand | - |
| Gene length (bp) | 1287 |
| Transcript length (bp) | 1287 |
| Coding sequence length (bp) | 1287 |
| Protein length (aa) | 429 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03473 | MOSC | MOSC domain | 1.6E-23 | 277 | 406 |
| PF03476 | MOSC_N | MOSC N-terminal beta barrel domain | 3.3E-06 | 81 | 118 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0030170 | pyridoxal phosphate binding | Yes |
| GO:0030151 | molybdenum ion binding | Yes |
| GO:0003824 | catalytic activity | Yes |
| GO:0046914 | transition metal ion binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0070279 | vitamin B6 binding | No |
| GO:0043169 | cation binding | No |
| GO:0019842 | vitamin binding | No |
| GO:0046872 | metal ion binding | No |
| GO:0043168 | anion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0036094 | small molecule binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 37 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 12 | 29 | 17 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 26.05 | 13.36 | 38.73 |
| 5d_25C | Five days - 25 degrees Celsius | 16.69 | 7.57 | 25.81 |
| 7d_25C | Seven days - 25 degrees Celsius | 18.34 | 8.39 | 28.28 |
| 10d_25C | Ten days - 25 degrees Celsius | 11.51 | 4.35 | 18.66 |
| 7d_15C | Seven days - 15 degrees Celsius | 15.78 | 6.32 | 25.23 |
| 7d_30C | Seven days - 30 degrees Celsius | 11.76 | 4.62 | 18.91 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.124307 | no |
| 3d_25C | 7d_25C | 0.245501 | no |
| 3d_25C | 7d_15C | 0.106191 | no |
| 3d_25C | 7d_30C | 0.007091 | yes |
| 3d_25C | 10d_25C | 0.003197 | yes |
| 5d_25C | 7d_25C | 0.821011 | no |
| 5d_25C | 7d_15C | 0.909083 | no |
| 5d_25C | 7d_30C | 0.316649 | no |
| 5d_25C | 10d_25C | 0.271936 | no |
| 7d_25C | 7d_15C | 0.718255 | no |
| 7d_25C | 7d_30C | 0.178358 | no |
| 7d_25C | 10d_25C | 0.145487 | no |
| 7d_15C | 7d_30C | 0.454099 | no |
| 7d_15C | 10d_25C | 0.405564 | no |
| 7d_30C | 10d_25C | 0.968152 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1662.t1 MSNVDISLGDDIVPNWFILFFLSVLFLSLKTLKTLTAPINPKGCRRLGLPPGQSNLDDEFDSKYSQGLPSNQDDH GRPSWRVKALFSYPLKSCGAVELQVSNVVPTGLEFDRQFVFAEYINDEWTIRTLRNASFNCLALIHPEIWVPDPS APDYNADLSEVKSQGVMLISYPRIPPAGWKGLPIKLGMALKFLKSQRTFQVPLLPPADSKFPLVPVKIWKDKPLA HDYGRLLPASLHAYLGSDPSKKTLTLFRASAPHSRQIFRNAPRKEDLGFQPSTAFADAYPIHLLSISSHRDVAAR CAYAIPRLSIRRFRANIIIQGPSAFEEDHWKRLAIGGTEIHASCRTVRCRLPNVDPLSGDRHNAEPDRTLKSYRR IDDGDRTNACLGMQLVPAKEEFVVRVGDSVEVLETGVHRYIKMLAPGEKVEGV* |
| Coding | >Pro_DTO377G3_2|g1662.t1 ATGTCCAATGTTGACATTTCCCTCGGGGATGATATCGTCCCCAATTGGTTTATTCTATTCTTTCTATCTGTGCTT TTTCTTTCTCTGAAGACATTGAAAACACTGACAGCGCCAATCAATCCCAAGGGATGTCGCCGCCTAGGACTTCCG CCAGGCCAAAGCAACCTAGACGATGAGTTCGACTCAAAGTACAGCCAGGGTCTACCTAGCAATCAAGATGATCAC GGCCGTCCGTCCTGGCGCGTAAAGGCATTGTTCAGCTACCCGCTCAAATCCTGTGGCGCAGTCGAGCTGCAAGTC TCAAACGTCGTACCAACTGGACTTGAATTTGATAGACAATTCGTCTTTGCAGAGTACATCAATGACGAATGGACC ATTCGTACCCTGCGAAATGCAAGCTTCAATTGTCTAGCCTTGATCCATCCGGAGATCTGGGTTCCTGACCCGTCT GCCCCAGATTACAACGCAGACCTGTCAGAAGTCAAGTCGCAGGGTGTGATGTTGATATCGTATCCCCGAATTCCG CCAGCAGGATGGAAGGGTCTGCCCATCAAGCTCGGCATGGCACTCAAGTTCCTCAAAAGCCAACGGACATTCCAA GTCCCGCTACTTCCCCCCGCGGACTCCAAGTTCCCACTAGTCCCAGTCAAGATCTGGAAAGACAAGCCCCTAGCC CATGACTACGGCAGACTGCTCCCAGCATCATTACACGCATATCTAGGGTCCGACCCATCAAAAAAGACCCTGACA CTCTTCCGCGCCAGTGCACCCCATTCACGGCAGATCTTCCGTAACGCACCGCGCAAAGAAGACCTAGGCTTCCAG CCAAGCACAGCCTTCGCAGACGCGTATCCAATCCACCTGCTCAGCATCTCCAGTCACCGGGATGTAGCAGCACGC TGTGCCTACGCAATCCCGCGATTGAGCATTCGCCGTTTCCGCGCGAACATCATCATTCAAGGCCCGTCTGCTTTT GAGGAAGATCACTGGAAGCGGCTTGCTATTGGCGGTACCGAGATCCACGCTTCTTGTCGGACTGTCCGGTGTCGA CTGCCTAATGTCGATCCGCTGTCCGGGGATAGACATAATGCTGAGCCGGATCGGACGCTAAAGTCGTATCGGCGG ATTGATGATGGCGATCGGACCAATGCGTGTTTAGGGATGCAGCTTGTTCCTGCGAAGGAGGAGTTTGTGGTTAGG GTTGGGGATTCTGTTGAGGTTCTTGAGACCGGGGTGCACCGGTATATTAAGATGTTGGCCCCCGGGGAGAAGGTC GAGGGGGTGTAA |
| Transcript | >Pro_DTO377G3_2|g1662.t1 ATGTCCAATGTTGACATTTCCCTCGGGGATGATATCGTCCCCAATTGGTTTATTCTATTCTTTCTATCTGTGCTT TTTCTTTCTCTGAAGACATTGAAAACACTGACAGCGCCAATCAATCCCAAGGGATGTCGCCGCCTAGGACTTCCG CCAGGCCAAAGCAACCTAGACGATGAGTTCGACTCAAAGTACAGCCAGGGTCTACCTAGCAATCAAGATGATCAC GGCCGTCCGTCCTGGCGCGTAAAGGCATTGTTCAGCTACCCGCTCAAATCCTGTGGCGCAGTCGAGCTGCAAGTC TCAAACGTCGTACCAACTGGACTTGAATTTGATAGACAATTCGTCTTTGCAGAGTACATCAATGACGAATGGACC ATTCGTACCCTGCGAAATGCAAGCTTCAATTGTCTAGCCTTGATCCATCCGGAGATCTGGGTTCCTGACCCGTCT GCCCCAGATTACAACGCAGACCTGTCAGAAGTCAAGTCGCAGGGTGTGATGTTGATATCGTATCCCCGAATTCCG CCAGCAGGATGGAAGGGTCTGCCCATCAAGCTCGGCATGGCACTCAAGTTCCTCAAAAGCCAACGGACATTCCAA GTCCCGCTACTTCCCCCCGCGGACTCCAAGTTCCCACTAGTCCCAGTCAAGATCTGGAAAGACAAGCCCCTAGCC CATGACTACGGCAGACTGCTCCCAGCATCATTACACGCATATCTAGGGTCCGACCCATCAAAAAAGACCCTGACA CTCTTCCGCGCCAGTGCACCCCATTCACGGCAGATCTTCCGTAACGCACCGCGCAAAGAAGACCTAGGCTTCCAG CCAAGCACAGCCTTCGCAGACGCGTATCCAATCCACCTGCTCAGCATCTCCAGTCACCGGGATGTAGCAGCACGC TGTGCCTACGCAATCCCGCGATTGAGCATTCGCCGTTTCCGCGCGAACATCATCATTCAAGGCCCGTCTGCTTTT GAGGAAGATCACTGGAAGCGGCTTGCTATTGGCGGTACCGAGATCCACGCTTCTTGTCGGACTGTCCGGTGTCGA CTGCCTAATGTCGATCCGCTGTCCGGGGATAGACATAATGCTGAGCCGGATCGGACGCTAAAGTCGTATCGGCGG ATTGATGATGGCGATCGGACCAATGCGTGTTTAGGGATGCAGCTTGTTCCTGCGAAGGAGGAGTTTGTGGTTAGG GTTGGGGATTCTGTTGAGGTTCTTGAGACCGGGGTGCACCGGTATATTAAGATGTTGGCCCCCGGGGAGAAGGTC GAGGGGGTGTAA |
| Gene | >Pro_DTO377G3_2|g1662.t1 ATGTCCAATGTTGACATTTCCCTCGGGGATGATATCGTCCCCAATTGGTTTATTCTATTCTTTCTATCTGTGCTT TTTCTTTCTCTGAAGACATTGAAAACACTGACAGCGCCAATCAATCCCAAGGGATGTCGCCGCCTAGGACTTCCG CCAGGCCAAAGCAACCTAGACGATGAGTTCGACTCAAAGTACAGCCAGGGTCTACCTAGCAATCAAGATGATCAC GGCCGTCCGTCCTGGCGCGTAAAGGCATTGTTCAGCTACCCGCTCAAATCCTGTGGCGCAGTCGAGCTGCAAGTC TCAAACGTCGTACCAACTGGACTTGAATTTGATAGACAATTCGTCTTTGCAGAGTACATCAATGACGAATGGACC ATTCGTACCCTGCGAAATGCAAGCTTCAATTGTCTAGCCTTGATCCATCCGGAGATCTGGGTTCCTGACCCGTCT GCCCCAGATTACAACGCAGACCTGTCAGAAGTCAAGTCGCAGGGTGTGATGTTGATATCGTATCCCCGAATTCCG CCAGCAGGATGGAAGGGTCTGCCCATCAAGCTCGGCATGGCACTCAAGTTCCTCAAAAGCCAACGGACATTCCAA GTCCCGCTACTTCCCCCCGCGGACTCCAAGTTCCCACTAGTCCCAGTCAAGATCTGGAAAGACAAGCCCCTAGCC CATGACTACGGCAGACTGCTCCCAGCATCATTACACGCATATCTAGGGTCCGACCCATCAAAAAAGACCCTGACA CTCTTCCGCGCCAGTGCACCCCATTCACGGCAGATCTTCCGTAACGCACCGCGCAAAGAAGACCTAGGCTTCCAG CCAAGCACAGCCTTCGCAGACGCGTATCCAATCCACCTGCTCAGCATCTCCAGTCACCGGGATGTAGCAGCACGC TGTGCCTACGCAATCCCGCGATTGAGCATTCGCCGTTTCCGCGCGAACATCATCATTCAAGGCCCGTCTGCTTTT GAGGAAGATCACTGGAAGCGGCTTGCTATTGGCGGTACCGAGATCCACGCTTCTTGTCGGACTGTCCGGTGTCGA CTGCCTAATGTCGATCCGCTGTCCGGGGATAGACATAATGCTGAGCCGGATCGGACGCTAAAGTCGTATCGGCGG ATTGATGATGGCGATCGGACCAATGCGTGTTTAGGGATGCAGCTTGTTCCTGCGAAGGAGGAGTTTGTGGTTAGG GTTGGGGATTCTGTTGAGGTTCTTGAGACCGGGGTGCACCGGTATATTAAGATGTTGGCCCCCGGGGAGAAGGTC GAGGGGGTGTAA |