© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1659.t1 |
| Gene name | |
| Location | scaffold_02:539112..540537 |
| Strand | - |
| Gene length (bp) | 1425 |
| Transcript length (bp) | 1368 |
| Coding sequence length (bp) | 1368 |
| Protein length (aa) | 456 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00487 | FA_desaturase | Fatty acid desaturase | 4.1E-20 | 65 | 292 |
| PF00173 | Cyt-b5 | Cytochrome b5-like Heme/Steroid binding domain | 2.9E-16 | 335 | 407 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006629 | lipid metabolic process | Yes |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 41 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 34 | 56 | 22 |
| 2 | 62 | 84 | 22 |
| 3 | 180 | 202 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1659.t1 MSSKLDASRPRAADTKKVHIADTQMTRQNWYKHVNWLNVTFIIGVPLTGCIQAFFVPLQLKTAIWAVIYYFFTGL GITAGYHRLWAHCSYSATLPLRIWLALVGGGAVEGSIRWWARDHRAHHRYTDTDKDPYSVRKGLLYSHLGWMVMK QNPKRIGRTDITDLNEDPVVVWQHRNYIKVVLTMGLIVPMLVAGLGWGDWYGGFVYAGILRIFFVQQATFCVNSL AHWLGDQPFDDRNSPRDHIITALVTLGEGYHNFHHEFPSDYRNAIEWHQYDPTKWTIWICKQLGLAYDLKQFRSN EIEKGRVQQLQKKIDQKRAKLDWGTPLDQLPVMEWEDYVEQTKNGRGLISIAGVVHDVTDFIKDHPGGKAMIKSG LGKDATAMFNGGVYYHSNGAHNLLSTMRVGVIRGGGEVEIWKRAQKENSEYVRDETGQRIIRAGQQVTKMPEPIP TADAA* |
| Coding | >Pro_DTO377G3_2|g1659.t1 ATGTCGTCCAAGCTGGATGCTTCACGCCCTCGGGCGGCTGACACCAAGAAGGTGCACATTGCTGATACCCAGATG ACTCGCCAGAACTGGTACAAGCACGTCAACTGGCTCAACGTTACTTTCATCATCGGCGTTCCCCTCACGGGCTGC ATCCAGGCGTTCTTCGTGCCTCTGCAGCTGAAGACTGCTATTTGGGCTGTCATCTATTACTTCTTCACTGGACTG GGAATCACAGCTGGATACCATCGTCTCTGGGCTCACTGCTCCTATTCCGCCACCTTGCCCCTGCGTATCTGGCTC GCTCTGGTCGGCGGCGGTGCCGTCGAAGGTTCCATCCGTTGGTGGGCTCGGGACCACCGTGCTCACCACCGTTAC ACCGACACCGACAAGGACCCTTACTCCGTGCGTAAGGGTTTGCTGTACTCGCACCTGGGATGGATGGTCATGAAG CAGAACCCCAAGCGAATTGGCCGCACTGATATCACCGATCTGAACGAAGACCCCGTCGTTGTCTGGCAACACCGC AACTACATCAAGGTCGTGCTCACCATGGGTCTCATCGTCCCCATGCTGGTCGCTGGTCTCGGCTGGGGTGACTGG TATGGCGGATTCGTGTACGCCGGTATTCTGCGTATCTTCTTCGTGCAACAGGCTACCTTCTGCGTCAACTCCCTG GCCCACTGGCTCGGCGACCAGCCCTTCGACGACCGCAACTCCCCCCGTGATCACATTATCACCGCCCTGGTCACC CTCGGCGAGGGCTACCACAACTTCCACCACGAGTTCCCCTCCGACTACCGTAACGCCATCGAATGGCACCAGTAC GACCCCACCAAGTGGACCATTTGGATCTGCAAGCAGCTCGGCCTGGCCTACGACTTGAAGCAGTTCCGCTCCAAC GAAATCGAGAAGGGCCGCGTCCAGCAGTTGCAGAAGAAGATCGACCAGAAGCGCGCCAAGCTCGACTGGGGTACT CCCCTGGACCAGCTTCCCGTCATGGAATGGGAGGACTATGTCGAGCAGACCAAGAACGGCCGTGGCCTCATCTCT ATTGCCGGAGTTGTTCACGACGTAACCGATTTCATCAAGGACCACCCCGGTGGCAAGGCGATGATCAAGTCCGGC CTTGGCAAGGACGCCACAGCCATGTTCAACGGTGGTGTTTACTACCACTCCAACGGTGCTCACAACTTGCTTTCC ACCATGCGTGTCGGAGTCATCCGTGGCGGCGGTGAGGTTGAGATTTGGAAGCGCGCTCAGAAGGAGAACTCCGAA TATGTGCGCGACGAGACAGGCCAGCGGATCATCCGGGCCGGCCAACAGGTCACTAAGATGCCTGAGCCAATCCCC ACTGCCGATGCAGCTTAA |
| Transcript | >Pro_DTO377G3_2|g1659.t1 ATGTCGTCCAAGCTGGATGCTTCACGCCCTCGGGCGGCTGACACCAAGAAGGTGCACATTGCTGATACCCAGATG ACTCGCCAGAACTGGTACAAGCACGTCAACTGGCTCAACGTTACTTTCATCATCGGCGTTCCCCTCACGGGCTGC ATCCAGGCGTTCTTCGTGCCTCTGCAGCTGAAGACTGCTATTTGGGCTGTCATCTATTACTTCTTCACTGGACTG GGAATCACAGCTGGATACCATCGTCTCTGGGCTCACTGCTCCTATTCCGCCACCTTGCCCCTGCGTATCTGGCTC GCTCTGGTCGGCGGCGGTGCCGTCGAAGGTTCCATCCGTTGGTGGGCTCGGGACCACCGTGCTCACCACCGTTAC ACCGACACCGACAAGGACCCTTACTCCGTGCGTAAGGGTTTGCTGTACTCGCACCTGGGATGGATGGTCATGAAG CAGAACCCCAAGCGAATTGGCCGCACTGATATCACCGATCTGAACGAAGACCCCGTCGTTGTCTGGCAACACCGC AACTACATCAAGGTCGTGCTCACCATGGGTCTCATCGTCCCCATGCTGGTCGCTGGTCTCGGCTGGGGTGACTGG TATGGCGGATTCGTGTACGCCGGTATTCTGCGTATCTTCTTCGTGCAACAGGCTACCTTCTGCGTCAACTCCCTG GCCCACTGGCTCGGCGACCAGCCCTTCGACGACCGCAACTCCCCCCGTGATCACATTATCACCGCCCTGGTCACC CTCGGCGAGGGCTACCACAACTTCCACCACGAGTTCCCCTCCGACTACCGTAACGCCATCGAATGGCACCAGTAC GACCCCACCAAGTGGACCATTTGGATCTGCAAGCAGCTCGGCCTGGCCTACGACTTGAAGCAGTTCCGCTCCAAC GAAATCGAGAAGGGCCGCGTCCAGCAGTTGCAGAAGAAGATCGACCAGAAGCGCGCCAAGCTCGACTGGGGTACT CCCCTGGACCAGCTTCCCGTCATGGAATGGGAGGACTATGTCGAGCAGACCAAGAACGGCCGTGGCCTCATCTCT ATTGCCGGAGTTGTTCACGACGTAACCGATTTCATCAAGGACCACCCCGGTGGCAAGGCGATGATCAAGTCCGGC CTTGGCAAGGACGCCACAGCCATGTTCAACGGTGGTGTTTACTACCACTCCAACGGTGCTCACAACTTGCTTTCC ACCATGCGTGTCGGAGTCATCCGTGGCGGCGGTGAGGTTGAGATTTGGAAGCGCGCTCAGAAGGAGAACTCCGAA TATGTGCGCGACGAGACAGGCCAGCGGATCATCCGGGCCGGCCAACAGGTCACTAAGATGCCTGAGCCAATCCCC ACTGCCGATGCAGCTTAA |
| Gene | >Pro_DTO377G3_2|g1659.t1 ATGTCGTCCAAGCTGGATGCTTCACGCCCTCGGGCGGCTGACACCAAGAAGGTGCACATTGCTGATACCCAGATG ACTCGCCAGAACTGGTACAAGCACGTCAACTGGCTCAACGTTACTTTCATCATCGGCGTTCCCCTCACGGGCTGC ATCCAGGCGTTCTTCGTGCCTCTGCAGCTGAAGACTGCTATTTGGGCTGTCATCTATTACTTCTTCACTGGACTG GGAATCACAGCTGGTAAGTAGTTCAGAATTAGAAGTATACTCCTTTGACTCGAGCTGACTCCGTTCTCAGGATAC CATCGTCTCTGGGCTCACTGCTCCTATTCCGCCACCTTGCCCCTGCGTATCTGGCTCGCTCTGGTCGGCGGCGGT GCCGTCGAAGGTTCCATCCGTTGGTGGGCTCGGGACCACCGTGCTCACCACCGTTACACCGACACCGACAAGGAC CCTTACTCCGTGCGTAAGGGTTTGCTGTACTCGCACCTGGGATGGATGGTCATGAAGCAGAACCCCAAGCGAATT GGCCGCACTGATATCACCGATCTGAACGAAGACCCCGTCGTTGTCTGGCAACACCGCAACTACATCAAGGTCGTG CTCACCATGGGTCTCATCGTCCCCATGCTGGTCGCTGGTCTCGGCTGGGGTGACTGGTATGGCGGATTCGTGTAC GCCGGTATTCTGCGTATCTTCTTCGTGCAACAGGCTACCTTCTGCGTCAACTCCCTGGCCCACTGGCTCGGCGAC CAGCCCTTCGACGACCGCAACTCCCCCCGTGATCACATTATCACCGCCCTGGTCACCCTCGGCGAGGGCTACCAC AACTTCCACCACGAGTTCCCCTCCGACTACCGTAACGCCATCGAATGGCACCAGTACGACCCCACCAAGTGGACC ATTTGGATCTGCAAGCAGCTCGGCCTGGCCTACGACTTGAAGCAGTTCCGCTCCAACGAAATCGAGAAGGGCCGC GTCCAGCAGTTGCAGAAGAAGATCGACCAGAAGCGCGCCAAGCTCGACTGGGGTACTCCCCTGGACCAGCTTCCC GTCATGGAATGGGAGGACTATGTCGAGCAGACCAAGAACGGCCGTGGCCTCATCTCTATTGCCGGAGTTGTTCAC GACGTAACCGATTTCATCAAGGACCACCCCGGTGGCAAGGCGATGATCAAGTCCGGCCTTGGCAAGGACGCCACA GCCATGTTCAACGGTGGTGTTTACTACCACTCCAACGGTGCTCACAACTTGCTTTCCACCATGCGTGTCGGAGTC ATCCGTGGCGGCGGTGAGGTTGAGATTTGGAAGCGCGCTCAGAAGGAGAACTCCGAATATGTGCGCGACGAGACA GGCCAGCGGATCATCCGGGCCGGCCAACAGGTCACTAAGATGCCTGAGCCAATCCCCACTGCCGATGCAGCTTAA |