Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g1640.t1
Gene name
Locationscaffold_02:491207..493104
Strand+
Gene length (bp)1897
Transcript length (bp)609
Coding sequence length (bp)609
Protein length (aa) 203

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01466 Skp1 Skp1 family, dimerisation domain 7.1E-28 152 199
PF03931 Skp1_POZ Skp1 family, tetramerisation domain 1.1E-22 46 106

GO

GO Term Description Terminal node
GO:0006511 ubiquitin-dependent protein catabolic process Yes
GO:0044238 primary metabolic process No
GO:1901564 organonitrogen compound metabolic process No
GO:0051603 proteolysis involved in cellular protein catabolic process No
GO:0044248 cellular catabolic process No
GO:1901575 organic substance catabolic process No
GO:0071704 organic substance metabolic process No
GO:0006508 proteolysis No
GO:0044265 cellular macromolecule catabolic process No
GO:0009057 macromolecule catabolic process No
GO:0044260 cellular macromolecule metabolic process No
GO:0009056 catabolic process No
GO:0044237 cellular metabolic process No
GO:0043170 macromolecule metabolic process No
GO:0009987 cellular process No
GO:0019941 modification-dependent protein catabolic process No
GO:0008152 metabolic process No
GO:0043632 modification-dependent macromolecule catabolic process No
GO:0008150 biological_process No
GO:0006807 nitrogen compound metabolic process No
GO:0019538 protein metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 32 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g1640.t1
MFRGSFQRTQARHTNFETWIFSFNKPTPFHAFSTLEPISNIITMSAITLTSSDGVDLSVERTTAERSVLIKNMLE
DLGDSGEAIPIPNVNEAVLKKVIEWCEHHKNDPPSASDDDDNRRKTTDIDEWDQKFMQVDQEMLFEIILAANYLD
IKALLDVGCKTVANMIKGKSPEEIRKTFNIQNDFTPEEEDQIRRENEWAEDR*
Coding >Pro_DTO377G3_2|g1640.t1
ATGTTTCGCGGAAGTTTTCAAAGGACGCAGGCGAGACACACCAACTTCGAAACCTGGATCTTTTCGTTCAATAAG
CCTACACCTTTCCACGCTTTTTCTACGCTTGAACCCATCTCCAACATCATAACCATGAGTGCTATCACCCTCACC
AGCTCCGATGGAGTCGATCTTTCCGTTGAACGCACCACTGCTGAGCGCTCCGTGCTGATCAAGAACATGCTTGAG
GATCTCGGCGACTCTGGAGAAGCCATTCCCATTCCTAACGTTAACGAGGCCGTCCTCAAGAAGGTCATCGAGTGG
TGCGAGCACCACAAGAACGACCCTCCTAGTGCTAGCGACGATGACGACAACCGTCGCAAGACCACTGACATCGAT
GAGTGGGACCAGAAGTTCATGCAGGTGGATCAGGAGATGCTCTTCGAGATTATCCTTGCCGCCAACTACTTGGAT
ATCAAGGCCCTCCTTGACGTCGGCTGCAAAACCGTCGCCAACATGATCAAGGGCAAATCCCCAGAGGAGATCCGC
AAGACCTTCAACATCCAGAACGACTTTACTCCTGAGGAGGAGGATCAGATCCGCCGCGAGAACGAATGGGCTGAG
GATCGTTAA
Transcript >Pro_DTO377G3_2|g1640.t1
ATGTTTCGCGGAAGTTTTCAAAGGACGCAGGCGAGACACACCAACTTCGAAACCTGGATCTTTTCGTTCAATAAG
CCTACACCTTTCCACGCTTTTTCTACGCTTGAACCCATCTCCAACATCATAACCATGAGTGCTATCACCCTCACC
AGCTCCGATGGAGTCGATCTTTCCGTTGAACGCACCACTGCTGAGCGCTCCGTGCTGATCAAGAACATGCTTGAG
GATCTCGGCGACTCTGGAGAAGCCATTCCCATTCCTAACGTTAACGAGGCCGTCCTCAAGAAGGTCATCGAGTGG
TGCGAGCACCACAAGAACGACCCTCCTAGTGCTAGCGACGATGACGACAACCGTCGCAAGACCACTGACATCGAT
GAGTGGGACCAGAAGTTCATGCAGGTGGATCAGGAGATGCTCTTCGAGATTATCCTTGCCGCCAACTACTTGGAT
ATCAAGGCCCTCCTTGACGTCGGCTGCAAAACCGTCGCCAACATGATCAAGGGCAAATCCCCAGAGGAGATCCGC
AAGACCTTCAACATCCAGAACGACTTTACTCCTGAGGAGGAGGATCAGATCCGCCGCGAGAACGAATGGGCTGAG
GATCGTTAA
Gene >Pro_DTO377G3_2|g1640.t1
ATGTTTCGCGGAAGTTTTCAAAGGACGCAGGCGAGGTAATAGAGAAGCTCTGCCATAAAACAAACACCATCGCTC
TTATATTTCATTCATAAACCGATTTGTGAGCCTAATGAGGCATACTCCTAGCCCTTTTATATAGTTACTGTTCTA
CTATGATGGTTAGTTTTTCTAACACGTTACTTTATGCTGTGACATCATACAAGCACTTATTGTACCTCTTTCGCG
CTTGGGCCATTCCCAATTGTGCTTCACTGCAGCGACCAGCCCTTAAATTTGCCCGCCTGACCAGAAGATATCGTA
AATCTGTCCTAATTGGAAGGAATCGAAGTAGACGTAGTAAGGCGACTTCCTATGAAACACATGTTTGAAGCACGG
GTCTGAAGTGTTCCCATGGATAGACGGATTTTGTCCGTAACTACTTTAGGTTGACTAGAAGAGGTTGTAGTTTGT
TCGTGTATGGATAATTAGAACAGAGCAGGATCATATCCGGCTGGTCAAATCCATTTTCAATAGGGTTGTCTTTGA
GGGAAGCCTCGATGTCGATATCTAGATCCTTCGAGAATATAGATCCATACATGTTTAGCTTAGTACTTGGACAAT
CTACTCCGTACAAAGAATATAATTCAGAAATACATTACACCTTTTACCAAAATACAAATTCCAGCCGCCCAGATT
CTTATTTCAGCCCGTAAATACGGACAGCCGCCGTTGGTTCTGGCTTAGTACGGAGTCAAGCCAGCGCTTCCAAGG
TTGCATTCCCAACTGTTGGCTCAAGTCACAGGCTACTAGTCTGTTTTTGACCAGGTTCTCGTTTCTTTAAATCAA
AAGAATGAGTCAAAGCAAATAATTGGTCTGATTTAGGCAACGGTCCGAAACTAAGACGTGGGGGCTGGCTTTGTA
GCCTTGTGAGCCTTATTGGCTTTATGGATACCGACCGCCTTTGGTAACTTAGAACTCCCTAAACCTCATCACCCG
CCATCTACTCGTTACGTCTTCGTCATTTTCAACCTGCAACTTCTCTCTTCAGACACACCAACTTCGAAACCTGGA
TCTTTTCGTTCAATAAGCCTACACCTTTCCACGCTTTTTCTACGCTTGGTCAGTAACATCGCCACCACCGAACGC
CCCGCACTACTCGAAAACGACCAGCAACACTAACTTCAGAACATTAGAACCCATCTCCAACATCATAACCATGAG
TGCTATCACCCTCACCAGCTCCGATGGAGTCGATCTTTCCGTTGGTAGGCATAATTTCCACAGCAGTCGCGAGTG
GAGCTGACAGATTCCGAACAGAACGCACCACTGCTGAGCGCTCCGTGCTGATCAAGAACATGCTTGAGGATCTCG
GCGACTCTGGAGAAGCCATTCCCATTCCTAACGTGAGTGTCTATTTCCGAGCATAGCCACCATCCAAGATCAGCC
GCTTACACCTCTTTGTCCAGGTTAACGAGGCCGTCCTCAAGAAGGTCATCGAGTGGTGCGAGCACCACAAGAACG
ACCCTCCTAGTGCTAGCGACGATGACGACAACCGTCGCAAGACCACTGACATCGATGAGTGGGACCAGAAGTTCA
TGCAGGTGGATCAGGAGATGCTCTTCGAGATTATCCTTGTACGTTCCGTTTGCAGACTTGTTCTTCGGTACATTT
ACTGACTGTTCATAGGCCGCCAACTACTTGGATATCAAGGCCCTCCTTGACGTCGGCTGCAAAACCGTCGCCAAC
ATGATCAAGGGCAAATCCCCAGAGGAGATCCGCAAGACCTTCAACATCCAGAACGACTTTACTCCTGAGGAGGAG
GATCAGATCCGCCGCGAGAACGAATGGGCTGAGGAGTAAGTTGCCACCACCGTATCCATTGATTGAATCTATGCT
GACATCCTGCGCTAGTCGTTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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