© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1639.t1 |
| Gene name | |
| Location | scaffold_02:488160..490069 |
| Strand | - |
| Gene length (bp) | 1909 |
| Transcript length (bp) | 1608 |
| Coding sequence length (bp) | 1608 |
| Protein length (aa) | 536 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03901 | Glyco_transf_22 | Alg9-like mannosyltransferase family | 6.5E-60 | 5 | 407 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016757 | glycosyltransferase activity | Yes |
| GO:0016740 | transferase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 18 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 174 | 196 | 22 |
| 2 | 209 | 231 | 22 |
| 3 | 274 | 296 | 22 |
| 4 | 348 | 370 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 38.81 | 22.63 | 55.00 |
| 5d_25C | Five days - 25 degrees Celsius | 87.30 | 53.37 | 121.22 |
| 7d_25C | Seven days - 25 degrees Celsius | 99.85 | 61.26 | 138.45 |
| 10d_25C | Ten days - 25 degrees Celsius | 136.52 | 83.28 | 189.75 |
| 7d_15C | Seven days - 15 degrees Celsius | 95.65 | 58.40 | 132.89 |
| 7d_30C | Seven days - 30 degrees Celsius | 104.82 | 64.35 | 145.29 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.000700 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.615646 | no |
| 5d_25C | 7d_15C | 0.760984 | no |
| 5d_25C | 7d_30C | 0.460358 | no |
| 5d_25C | 10d_25C | 0.029770 | yes |
| 7d_25C | 7d_15C | 0.895315 | no |
| 7d_25C | 7d_30C | 0.876610 | no |
| 7d_25C | 10d_25C | 0.149181 | no |
| 7d_15C | 7d_30C | 0.749881 | no |
| 7d_15C | 10d_25C | 0.098743 | no |
| 7d_30C | 10d_25C | 0.243542 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1639.t1 MWRRTYLLLLVIRVYFALSPSYLHPDENFQGPELFAGRIFSFPSKIPWEFTVEHPIRSIFPIWAAYELPMNLLKW FYTETGEGSPPPHMIYNALRGGMFLLSFVLEDWAIYELVPSPRHRRATVVLVASSYVTWTYQTHTFSNSLETLLV AWGLVLIRRIVNNKRHSSFFSHAVLAFIAVVGVFNRITFPAFLLFPGLQLLPQFQRKPLGLAAFLLFGLFFSFIA IYTDTIFYRPTASFLSVFRHPIITPLNNLLYNTDTANLAQHGLHPHYQHFTANLLQLLGPAYIAMIVSLFSRPLI PYWMRNVRALSALSATMLLSLFPHQEPRFLLPVVPLLLSCFPMRGSRLLVVVWVIFNAAMGFLMGVYHQGGVVPT QLAMRDIVSSSPTPYIPSATVFWWKTYSPPLWLLGGDDQSTEIQTLDLMGMSGVDMIQQLELVVPGCSTPSPVFL VAPTSATFLDQYVFSAPQSQDQDQDQAQDQAQAQNQTLQLHQLWSYRNHLNLDDMDFGDDGILPTLKRVVGRRGL DVWSVQRSCK* |
| Coding | >Pro_DTO377G3_2|g1639.t1 ATGTGGCGTCGAACATATTTACTGTTGTTGGTGATTCGGGTGTACTTTGCGCTGTCTCCAAGCTATCTACATCCT GATGAGAATTTCCAAGGTCCAGAGCTTTTCGCAGGTCGCATATTCTCATTTCCGTCGAAGATACCATGGGAATTC ACCGTTGAACACCCCATTCGCAGCATATTCCCAATATGGGCGGCCTACGAGCTTCCAATGAACCTCTTGAAATGG TTCTATACCGAGACCGGCGAGGGCAGCCCCCCACCCCACATGATTTACAATGCGCTGCGCGGTGGAATGTTCCTA TTAAGTTTTGTCCTCGAGGACTGGGCGATCTATGAGCTAGTGCCTTCTCCGCGTCATCGGCGCGCGACAGTGGTG CTGGTGGCCTCATCGTATGTCACCTGGACGTATCAGACGCACACATTTTCCAACAGCCTCGAGACCCTGTTGGTT GCCTGGGGGCTGGTTTTGATTCGGCGCATTGTCAACAATAAGCGACACTCGTCCTTCTTCTCCCATGCCGTGCTT GCCTTCATCGCCGTAGTGGGCGTCTTCAACCGCATCACTTTCCCGGCTTTCCTTCTCTTCCCGGGTCTGCAATTG CTGCCTCAGTTCCAGCGCAAACCACTCGGGCTCGCAGCATTCCTCCTCTTCGGTCTCTTCTTTTCCTTCATCGCC ATCTACACAGACACGATCTTCTACCGGCCAACTGCCTCCTTCCTCAGCGTTTTCCGCCACCCCATAATAACTCCC CTCAACAACCTCCTCTACAACACCGACACTGCCAACCTAGCCCAGCACGGCCTCCACCCCCACTACCAACACTTC ACTGCAAACCTCCTCCAACTCCTCGGCCCAGCCTACATTGCAATGATAGTCTCCCTTTTCAGCCGGCCGCTAATA CCATACTGGATGCGCAATGTGCGCGCCCTCTCCGCGCTCTCTGCAACGATGCTCCTCTCCCTCTTTCCGCACCAA GAACCACGCTTCCTCCTCCCAGTCGTGCCCCTCCTCCTCAGCTGCTTCCCCATGCGCGGCTCCCGCCTCCTCGTT GTTGTATGGGTCATCTTCAACGCAGCCATGGGCTTCCTTATGGGCGTCTACCACCAAGGCGGCGTCGTTCCCACG CAGCTAGCAATGCGCGACATCGTCTCATCTAGTCCAACACCGTACATACCATCCGCAACGGTGTTCTGGTGGAAG ACATACTCCCCACCGCTGTGGCTTCTCGGTGGAGACGACCAGTCCACAGAAATCCAGACGCTGGATCTCATGGGC ATGTCAGGTGTGGATATGATCCAGCAGCTGGAGCTGGTTGTACCCGGCTGCTCTACTCCATCGCCTGTGTTCCTA GTCGCGCCTACATCGGCTACTTTCCTCGATCAATACGTCTTCTCTGCGCCTCAGAGCCAAGACCAGGACCAAGAC CAAGCCCAAGACCAAGCCCAAGCCCAAAACCAAACTTTGCAGCTCCATCAACTGTGGTCGTATCGCAACCACCTC AACCTCGATGACATGGACTTCGGCGACGACGGGATCCTGCCGACTCTGAAACGGGTCGTTGGACGCCGTGGGCTG GATGTTTGGTCTGTGCAGAGATCTTGCAAATAA |
| Transcript | >Pro_DTO377G3_2|g1639.t1 ATGTGGCGTCGAACATATTTACTGTTGTTGGTGATTCGGGTGTACTTTGCGCTGTCTCCAAGCTATCTACATCCT GATGAGAATTTCCAAGGTCCAGAGCTTTTCGCAGGTCGCATATTCTCATTTCCGTCGAAGATACCATGGGAATTC ACCGTTGAACACCCCATTCGCAGCATATTCCCAATATGGGCGGCCTACGAGCTTCCAATGAACCTCTTGAAATGG TTCTATACCGAGACCGGCGAGGGCAGCCCCCCACCCCACATGATTTACAATGCGCTGCGCGGTGGAATGTTCCTA TTAAGTTTTGTCCTCGAGGACTGGGCGATCTATGAGCTAGTGCCTTCTCCGCGTCATCGGCGCGCGACAGTGGTG CTGGTGGCCTCATCGTATGTCACCTGGACGTATCAGACGCACACATTTTCCAACAGCCTCGAGACCCTGTTGGTT GCCTGGGGGCTGGTTTTGATTCGGCGCATTGTCAACAATAAGCGACACTCGTCCTTCTTCTCCCATGCCGTGCTT GCCTTCATCGCCGTAGTGGGCGTCTTCAACCGCATCACTTTCCCGGCTTTCCTTCTCTTCCCGGGTCTGCAATTG CTGCCTCAGTTCCAGCGCAAACCACTCGGGCTCGCAGCATTCCTCCTCTTCGGTCTCTTCTTTTCCTTCATCGCC ATCTACACAGACACGATCTTCTACCGGCCAACTGCCTCCTTCCTCAGCGTTTTCCGCCACCCCATAATAACTCCC CTCAACAACCTCCTCTACAACACCGACACTGCCAACCTAGCCCAGCACGGCCTCCACCCCCACTACCAACACTTC ACTGCAAACCTCCTCCAACTCCTCGGCCCAGCCTACATTGCAATGATAGTCTCCCTTTTCAGCCGGCCGCTAATA CCATACTGGATGCGCAATGTGCGCGCCCTCTCCGCGCTCTCTGCAACGATGCTCCTCTCCCTCTTTCCGCACCAA GAACCACGCTTCCTCCTCCCAGTCGTGCCCCTCCTCCTCAGCTGCTTCCCCATGCGCGGCTCCCGCCTCCTCGTT GTTGTATGGGTCATCTTCAACGCAGCCATGGGCTTCCTTATGGGCGTCTACCACCAAGGCGGCGTCGTTCCCACG CAGCTAGCAATGCGCGACATCGTCTCATCTAGTCCAACACCGTACATACCATCCGCAACGGTGTTCTGGTGGAAG ACATACTCCCCACCGCTGTGGCTTCTCGGTGGAGACGACCAGTCCACAGAAATCCAGACGCTGGATCTCATGGGC ATGTCAGGTGTGGATATGATCCAGCAGCTGGAGCTGGTTGTACCCGGCTGCTCTACTCCATCGCCTGTGTTCCTA GTCGCGCCTACATCGGCTACTTTCCTCGATCAATACGTCTTCTCTGCGCCTCAGAGCCAAGACCAGGACCAAGAC CAAGCCCAAGACCAAGCCCAAGCCCAAAACCAAACTTTGCAGCTCCATCAACTGTGGTCGTATCGCAACCACCTC AACCTCGATGACATGGACTTCGGCGACGACGGGATCCTGCCGACTCTGAAACGGGTCGTTGGACGCCGTGGGCTG GATGTTTGGTCTGTGCAGAGATCTTGCAAATAA |
| Gene | >Pro_DTO377G3_2|g1639.t1 ATGTGGCGTCGAACATATTTACTGTTGTTGGTGATTCGGGTGTACTTTGCGCTGTCTCCAAGCTATCTACATCCT GATGAGAATTTCCAAGGTCCAGAGCTTTTCGCAGGTATGTTCAACTATCCAATGATCGCCCCACCAATCGCGATC ATACTGCGACTATACGGACGCGAGGAACTCTTTGTTGCGATTTTCCCTAAAGCAGAAAGCAAAACAGCGCGATCC GGCAATTCCGCGACTCTCCTATACGAAGAACAAACATTGACCAAGTCGCCTGAATACAGGTCGCATATTCTCATT TCCGTCGAAGATACCATGGGAATTCACCGTTGAACACCCCATTCGCAGCATATTCCCAATATGGGCGGCCTACGA GCTTCCAATGAACCTCTTGAAATGGTTCTATACCGAGACCGGCGAGGGCAGCCCCCCACCCCACATGATTTACAA TGCGCTGCGCGGTGGAATGTTCCTATTAAGTTTTGTCCTCGAGGACTGGGCGATCTATGAGCTAGTGCCTTCTCC GCGTCATCGGCGCGCGACAGTGGTGCTGGTGGCCTCATCGTATGTCACCTGGACGTATCAGACGCACACATTTTC CAACAGCCTCGAGACCCTGTTGGTTGCCTGGGGGCTGGTTTTGATTCGGCGCATTGTCAACAATAAGGTGGGAGA GATAAAGCTCCAAAGCGCACCATCCATGCTAACCTTAGCTCCAGCGACACTCGTCCTTCTTCTCCCATGCCGTGC TTGCCTTCATCGCCGTAGTGGGCGTCTTCAACCGCATCACTTTCCCGGCTTTCCTTCTCTTCCCGGGTCTGCAAT TGCTGCCTCAGTTCCAGCGCAAGTGCGTCAATATACATACATTTTACCTCCAGCTCATCCATCAATACACATGTG CTAACCCCGCCTTCGCGCCAGACCACTCGGGCTCGCAGCATTCCTCCTCTTCGGTCTCTTCTTTTCCTTCATCGC CATCTACACAGACACGATCTTCTACCGGCCAACTGCCTCCTTCCTCAGCGTTTTCCGCCACCCCATAATAACTCC CCTCAACAACCTCCTCTACAACACCGACACTGCCAACCTAGCCCAGCACGGCCTCCACCCCCACTACCAACACTT CACTGCAAACCTCCTCCAACTCCTCGGCCCAGCCTACATTGCAATGATAGTCTCCCTTTTCAGCCGGCCGCTAAT ACCATACTGGATGCGCAATGTGCGCGCCCTCTCCGCGCTCTCTGCAACGATGCTCCTCTCCCTCTTTCCGCACCA AGAACCACGCTTCCTCCTCCCAGTCGTGCCCCTCCTCCTCAGCTGCTTCCCCATGCGCGGCTCCCGCCTCCTCGT TGTTGTATGGGTCATCTTCAACGCAGCCATGGGCTTCCTTATGGGCGTCTACCACCAAGGCGGCGTCGTTCCCAC GCAGCTAGCAATGCGCGACATCGTCTCATCTAGTCCAACACCGTACATACCATCCGCAACGGTGTTCTGGTGGAA GACATACTCCCCACCGCTGTGGCTTCTCGGTGGAGACGACCAGTCCACAGAAATCCAGACGCTGGATCTCATGGG CATGTCAGGTGTGGATATGATCCAGCAGCTGGAGCTGGTTGTACCCGGCTGCTCTACTCCATCGCCTGTGTTCCT AGTCGCGCCTACATCGGCTACTTTCCTCGATCAATACGTCTTCTCTGCGCCTCAGAGCCAAGACCAGGACCAAGA CCAAGCCCAAGACCAAGCCCAAGCCCAAAACCAAACTTTGCAGCTCCATCAACTGTGGTCGTATCGCAACCACCT CAACCTCGATGACATGGACTTCGGCGACGACGGGATCCTGCCGACTCTGAAACGGGTCGTTGGACGCCGTGGGCT GGATGTTTGGTCTGTGCAGAGATCTTGCAAATAA |