© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1638.t1 |
| Gene name | |
| Location | scaffold_02:485671..487163 |
| Strand | + |
| Gene length (bp) | 1492 |
| Transcript length (bp) | 1134 |
| Coding sequence length (bp) | 1134 |
| Protein length (aa) | 378 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF09280 | XPC-binding | XPC-binding domain | 5.9E-23 | 257 | 312 |
| PF00627 | UBA | UBA/TS-N domain | 1.5E-07 | 154 | 183 |
| PF00627 | UBA | UBA/TS-N domain | 1.8E-12 | 333 | 368 |
| PF00240 | ubiquitin | Ubiquitin family | 2.8E-20 | 4 | 71 |
| PF11976 | Rad60-SLD | Ubiquitin-2 like Rad60 SUMO-like | 6.1E-07 | 1 | 68 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | Yes |
| GO:0003684 | damaged DNA binding | Yes |
| GO:0006289 | nucleotide-excision repair | Yes |
| GO:0071704 | organic substance metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0030163 | protein catabolic process | No |
| GO:0009056 | catabolic process | No |
| GO:0005488 | binding | No |
| GO:0009057 | macromolecule catabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003677 | DNA binding | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0006281 | DNA repair | No |
| GO:0019538 | protein metabolic process | No |
| GO:0006259 | DNA metabolic process | No |
| GO:1901565 | organonitrogen compound catabolic process | No |
| GO:0033554 | cellular response to stress | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0050896 | response to stimulus | No |
| GO:0044238 | primary metabolic process | No |
| GO:0051603 | proteolysis involved in protein catabolic process | No |
| GO:0009987 | cellular process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0051716 | cellular response to stimulus | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0010498 | proteasomal protein catabolic process | No |
| GO:0006511 | ubiquitin-dependent protein catabolic process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0044248 | cellular catabolic process | No |
| GO:1901575 | organic substance catabolic process | No |
| GO:0006508 | proteolysis | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0006974 | cellular response to DNA damage stimulus | No |
| GO:0006950 | response to stress | No |
| GO:0019941 | modification-dependent protein catabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0043632 | modification-dependent macromolecule catabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0044265 | cellular macromolecule catabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 50 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 146.64 | 90.37 | 202.90 |
| 5d_25C | Five days - 25 degrees Celsius | 179.31 | 110.63 | 247.98 |
| 7d_25C | Seven days - 25 degrees Celsius | 168.22 | 103.02 | 233.42 |
| 10d_25C | Ten days - 25 degrees Celsius | 207.05 | 126.97 | 287.12 |
| 7d_15C | Seven days - 15 degrees Celsius | 191.78 | 117.99 | 265.56 |
| 7d_30C | Seven days - 30 degrees Celsius | 169.56 | 104.04 | 235.08 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.394386 | no |
| 3d_25C | 7d_25C | 0.607327 | no |
| 3d_25C | 7d_15C | 0.232845 | no |
| 3d_25C | 7d_30C | 0.570124 | no |
| 3d_25C | 10d_25C | 0.106191 | no |
| 5d_25C | 7d_25C | 0.836178 | no |
| 5d_25C | 7d_15C | 0.828065 | no |
| 5d_25C | 7d_30C | 0.855008 | no |
| 5d_25C | 10d_25C | 0.579508 | no |
| 7d_25C | 7d_15C | 0.634774 | no |
| 7d_25C | 7d_30C | 0.982438 | no |
| 7d_25C | 10d_25C | 0.399787 | no |
| 7d_15C | 7d_30C | 0.646093 | no |
| 7d_15C | 10d_25C | 0.799436 | no |
| 7d_30C | 10d_25C | 0.411873 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1638.t1 MKLTFKDLKQEKFVIDVEPSETVREVKVKIAQEKGEYEAERMKVIYSGKILQDDKTVESYNIQEKDFLVCLPSKQ PKAASSAASSQVPSTPAPRAPVSTPAAPPAPHAAIAPPSFAAPATPSPAGAAPAPASGPAFGDPSALTMGSAAEG AVVQMEAMGFTRTDIDRAMRAAFYNPDRAIEYLLTGIPENIQEQQQQRQASEPAPTGAAPAAPAAPSSDEPHLNL FEAAAQAGGEGGGRARGAAGAGAAGGEALGSLEFLRNNPHFQQLRQLVQQQPHMLEPILQQVAAGNPQIASIIGQ NSDQFLQLLGEELEDEEAALPPGAQAISVTEEERDAIERLCGLGFPRDSVIQAYFACDKNEDLAANFLFDQPDED EQ* |
| Coding | >Pro_DTO377G3_2|g1638.t1 ATGAAGCTCACTTTCAAGGATCTGAAGCAGGAGAAGTTTGTCATCGATGTCGAACCTTCTGAAACTGTTCGCGAG GTCAAGGTCAAAATCGCCCAAGAGAAAGGCGAATATGAGGCAGAGCGCATGAAGGTCATCTACTCTGGAAAGATC CTTCAGGATGATAAGACAGTCGAATCTTACAACATCCAAGAAAAGGACTTCCTAGTGTGCTTGCCTTCGAAGCAA CCCAAGGCCGCCTCATCTGCCGCTTCCTCCCAAGTTCCCTCGACCCCGGCTCCTCGAGCTCCTGTGTCAACGCCT GCTGCTCCCCCGGCTCCTCATGCTGCCATTGCTCCTCCCTCTTTTGCCGCCCCCGCGACACCTTCCCCGGCCGGT GCAGCTCCAGCTCCAGCGAGCGGTCCCGCTTTCGGAGACCCTTCCGCTCTCACCATGGGCTCTGCCGCTGAGGGC GCAGTCGTCCAGATGGAGGCAATGGGATTCACACGTACCGATATCGACCGTGCCATGCGCGCCGCATTCTATAAC CCCGATCGTGCCATCGAATATCTCCTAACCGGTATTCCCGAAAACATCCAGGAACAGCAACAACAACGACAAGCC TCAGAGCCAGCCCCTACCGGCGCTGCTCCTGCTGCCCCTGCTGCTCCTTCCAGTGATGAGCCGCACCTCAACCTC TTCGAAGCTGCCGCTCAGGCCGGTGGTGAAGGTGGTGGCCGAGCTCGCGGTGCTGCTGGTGCCGGTGCCGCTGGT GGCGAAGCTCTCGGCAGCCTGGAGTTCCTCCGCAACAACCCCCATTTCCAACAGCTTCGTCAGCTTGTCCAGCAG CAGCCTCATATGCTCGAGCCCATCCTCCAACAGGTCGCCGCTGGGAATCCTCAAATTGCGTCAATCATCGGACAG AACTCCGATCAATTCCTGCAGCTTCTAGGTGAGGAACTCGAGGACGAGGAGGCTGCCTTGCCACCCGGCGCGCAG GCCATTTCAGTTACGGAAGAAGAGCGCGATGCTATTGAACGTCTATGCGGTCTGGGCTTCCCTCGCGACTCCGTC ATTCAGGCCTACTTCGCCTGCGACAAGAATGAGGATCTCGCCGCCAACTTCCTCTTCGACCAGCCTGACGAGGAT GAGCAGTAA |
| Transcript | >Pro_DTO377G3_2|g1638.t1 ATGAAGCTCACTTTCAAGGATCTGAAGCAGGAGAAGTTTGTCATCGATGTCGAACCTTCTGAAACTGTTCGCGAG GTCAAGGTCAAAATCGCCCAAGAGAAAGGCGAATATGAGGCAGAGCGCATGAAGGTCATCTACTCTGGAAAGATC CTTCAGGATGATAAGACAGTCGAATCTTACAACATCCAAGAAAAGGACTTCCTAGTGTGCTTGCCTTCGAAGCAA CCCAAGGCCGCCTCATCTGCCGCTTCCTCCCAAGTTCCCTCGACCCCGGCTCCTCGAGCTCCTGTGTCAACGCCT GCTGCTCCCCCGGCTCCTCATGCTGCCATTGCTCCTCCCTCTTTTGCCGCCCCCGCGACACCTTCCCCGGCCGGT GCAGCTCCAGCTCCAGCGAGCGGTCCCGCTTTCGGAGACCCTTCCGCTCTCACCATGGGCTCTGCCGCTGAGGGC GCAGTCGTCCAGATGGAGGCAATGGGATTCACACGTACCGATATCGACCGTGCCATGCGCGCCGCATTCTATAAC CCCGATCGTGCCATCGAATATCTCCTAACCGGTATTCCCGAAAACATCCAGGAACAGCAACAACAACGACAAGCC TCAGAGCCAGCCCCTACCGGCGCTGCTCCTGCTGCCCCTGCTGCTCCTTCCAGTGATGAGCCGCACCTCAACCTC TTCGAAGCTGCCGCTCAGGCCGGTGGTGAAGGTGGTGGCCGAGCTCGCGGTGCTGCTGGTGCCGGTGCCGCTGGT GGCGAAGCTCTCGGCAGCCTGGAGTTCCTCCGCAACAACCCCCATTTCCAACAGCTTCGTCAGCTTGTCCAGCAG CAGCCTCATATGCTCGAGCCCATCCTCCAACAGGTCGCCGCTGGGAATCCTCAAATTGCGTCAATCATCGGACAG AACTCCGATCAATTCCTGCAGCTTCTAGGTGAGGAACTCGAGGACGAGGAGGCTGCCTTGCCACCCGGCGCGCAG GCCATTTCAGTTACGGAAGAAGAGCGCGATGCTATTGAACGTCTATGCGGTCTGGGCTTCCCTCGCGACTCCGTC ATTCAGGCCTACTTCGCCTGCGACAAGAATGAGGATCTCGCCGCCAACTTCCTCTTCGACCAGCCTGACGAGGAT GAGCAGTAA |
| Gene | >Pro_DTO377G3_2|g1638.t1 ATGAAGCTCACTTTCAAGGTACGAAAACTTGCTCTTGGGGTCCTCACTGCTGCAGACTGCTGACAGTCATCGATT ACAGGATCTGAAGCAGGAGAAGTTTGTCATCGATGTCGAACCTTCTGAAACTGTACGTGTGTTCCTGTCGCTATA ACTACCCATCGTCATCTAGTGCGGGGCTCATCTGTTTAGGTTCGCGAGGTCAAGGTCAAAATCGCCCAAGAGAAA GGCGAATATGAGGCAGAGCGCATGAAGGTCATCTACTCTGGTTCGTATTTTCCCCCTTGCTAGACGGATTCTCCG TTCACGGTGCTATGGCTAACCTTCGCTTTGTTCCCTTTATAGGAAAGATCCTTCAGGATGATAAGACAGTCGAAT CTTACAACATCCAAGAAAAGGACTTCCTAGTGTGCTTGCCTTCGAAGGTATAGGTTAACCTGGTCTATGATTTCC GAGCCAGAGCTGACATTTGATGTAGCAACCCAAGGCCGCCTCATCTGCCGCTTCCTCCCAAGTTCCCTCGACCCC GGCTCCTCGAGCTCCTGTGTCAACGCCTGCTGCTCCCCCGGCTCCTCATGCTGCCATTGCTCCTCCCTCTTTTGC CGCCCCCGCGACACCTTCCCCGGCCGGTGCAGCTCCAGCTCCAGCGAGCGGTCCCGCTTTCGGAGACCCTTCCGC TCTCACCATGGGCTCTGCCGCTGAGGGCGCAGTCGTCCAGATGGAGGCAATGGGATTCACACGTACCGATATCGA CCGTGCCATGCGCGCCGCATTCTATAACCCCGATCGTGCCATCGAATATCTCCTAACCGTAAGCTTTTGTTGGAA GTTACTTCTTGAATGTTTGCTAATGATCACGACAGGGTATTCCCGAAAACATCCAGGAACAGCAACAACAACGAC AAGCCTCAGAGCCAGCCCCTACCGGCGCTGCTCCTGCTGCCCCTGCTGCTCCTTCCAGTGATGAGCCGCACCTCA ACCTCTTCGAAGCTGCCGCTCAGGCCGGTGGTGAAGGTGGTGGCCGAGCTCGCGGTGCTGCTGGTGCCGGTGCCG CTGGTGGCGAAGCTCTCGGCAGCCTGGAGTTCCTCCGCAACAACCCCCATTTCCAACAGCTTCGTCAGCTTGTCC AGCAGCAGCCTCATATGCTCGAGCCCATCCTCCAACAGGTCGCCGCTGGGAATCCTCAAATTGCGTCAATCATCG GACAGAACTCCGATCAATTCCTGCAGCTTCTAGGTGAGGAACTCGAGGACGAGGAGGCTGCCTTGCCACCCGGCG CGCAGGCCATTTCAGTTACGGAAGAAGAGCGCGATGCTATTGAACGTGTATGTTGAAACTTCCCCTCGATCTCAT AGTTTTATGACTAACCCACAACCAGCTATGCGGTCTGGGCTTCCCTCGCGACTCCGTCATTCAGGCCTACTTCGC CTGCGACAAGAATGAGGATCTCGCCGCCAACTTCCTCTTCGACCAGCCTGACGAGGATGAGCAGTAA |