© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1613.t1 |
| Gene name | |
| Location | scaffold_02:407891..408335 |
| Strand | - |
| Gene length (bp) | 444 |
| Transcript length (bp) | 306 |
| Coding sequence length (bp) | 306 |
| Protein length (aa) | 102 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06645 | SPC12 | Microsomal signal peptidase 12 kDa subunit (SPC12) | 3.7E-28 | 16 | 85 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005787 | signal peptidase complex | Yes |
| GO:0006465 | signal peptide processing | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0032991 | protein-containing complex | No |
| GO:0016485 | protein processing | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0006518 | peptide metabolic process | No |
| GO:0043603 | cellular amide metabolic process | No |
| GO:0051604 | protein maturation | No |
| GO:0019538 | protein metabolic process | No |
| GO:1905368 | peptidase complex | No |
| GO:0008150 | biological_process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:0008152 | metabolic process | No |
| GO:1902494 | catalytic complex | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0140534 | endoplasmic reticulum protein-containing complex | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0006508 | proteolysis | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0098796 | membrane protein complex | No |
| GO:0044237 | cellular metabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0044238 | primary metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 26 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 24 | 46 | 22 |
| 2 | 51 | 73 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 214.06 | 104.94 | 323.18 |
| 5d_25C | Five days - 25 degrees Celsius | 184.28 | 85.55 | 283.00 |
| 7d_25C | Seven days - 25 degrees Celsius | 167.62 | 77.08 | 258.17 |
| 10d_25C | Ten days - 25 degrees Celsius | 177.59 | 82.87 | 272.32 |
| 7d_15C | Seven days - 15 degrees Celsius | 218.54 | 105.84 | 331.23 |
| 7d_30C | Seven days - 30 degrees Celsius | 161.80 | 72.08 | 251.53 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.685040 | no |
| 3d_25C | 7d_25C | 0.454047 | no |
| 3d_25C | 7d_15C | 0.964042 | no |
| 3d_25C | 7d_30C | 0.394386 | no |
| 3d_25C | 10d_25C | 0.600536 | no |
| 5d_25C | 7d_25C | 0.823457 | no |
| 5d_25C | 7d_15C | 0.648161 | no |
| 5d_25C | 7d_30C | 0.755471 | no |
| 5d_25C | 10d_25C | 0.938959 | no |
| 7d_25C | 7d_15C | 0.427712 | no |
| 7d_25C | 7d_30C | 0.943522 | no |
| 7d_25C | 10d_25C | 0.902100 | no |
| 7d_15C | 7d_30C | 0.375658 | no |
| 7d_15C | 10d_25C | 0.565616 | no |
| 7d_30C | 10d_25C | 0.832013 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1613.t1 MDELLAPIQDAIEGQIDFHGQRLADLLSTILLVISGAASFLVGYIYKDIHLTLWTGLAGTLFTAFVVVPPWPVYN RNPEKWLGSTSARATPGITVDGVKVQ* |
| Coding | >Pro_DTO377G3_2|g1613.t1 ATGGATGAATTACTCGCCCCTATTCAAGATGCCATTGAAGGCCAAATCGACTTCCACGGCCAACGTCTAGCAGAC CTACTGTCGACCATCTTGCTGGTTATATCAGGGGCCGCCAGTTTCCTCGTCGGATACATCTACAAAGACATTCAC CTTACGTTATGGACTGGCTTGGCGGGCACACTGTTCACAGCTTTCGTCGTTGTCCCGCCCTGGCCGGTATACAAC CGTAACCCAGAGAAGTGGTTGGGTTCAACAAGCGCGAGGGCAACTCCGGGTATAACTGTGGACGGGGTGAAGGTG CAATAA |
| Transcript | >Pro_DTO377G3_2|g1613.t1 ATGGATGAATTACTCGCCCCTATTCAAGATGCCATTGAAGGCCAAATCGACTTCCACGGCCAACGTCTAGCAGAC CTACTGTCGACCATCTTGCTGGTTATATCAGGGGCCGCCAGTTTCCTCGTCGGATACATCTACAAAGACATTCAC CTTACGTTATGGACTGGCTTGGCGGGCACACTGTTCACAGCTTTCGTCGTTGTCCCGCCCTGGCCGGTATACAAC CGTAACCCAGAGAAGTGGTTGGGTTCAACAAGCGCGAGGGCAACTCCGGGTATAACTGTGGACGGGGTGAAGGTG CAATAA |
| Gene | >Pro_DTO377G3_2|g1613.t1 ATGGATGAATTACTCGCCCCTATTCAAGATGCCATTGAAGGCCAAATCGTACGCTCCGCCGCACCGCCCCTATTG CTCTGCGCTTTTGGACCATCGAAGCTAACAAGATCTTGATAACAGGACTTCCACGGCCAACGTCTAGCAGACCTA CTGTCGACCATCTTGCTGGTTATATCAGGGGTATGTTGCACAGATATTGAGTTTTGTATTACCAGAGCGAGCTGA CGATTGTTTTATCTGCTCCAGGCCGCCAGTTTCCTCGTCGGATACATCTACAAAGACATTCACCTTACGTTATGG ACTGGCTTGGCGGGCACACTGTTCACAGCTTTCGTCGTTGTCCCGCCCTGGCCGGTATACAACCGTAACCCAGAG AAGTGGTTGGGTTCAACAAGCGCGAGGGCAACTCCGGGTATAACTGTGGACGGGGTGAAGGTGCAATAA |