Penicillium roqueforti LCP96 04111

General Properties

Protein ID	Pro_DTO377G3_2\|g1606.t1
Gene name
Location	scaffold_02:392880..394336
Strand	-
Gene length (bp)	1456
Transcript length (bp)	1215
Coding sequence length (bp)	1215
Protein length (aa)	405

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF10354	BMT5-like	rRNA (uridine-N3-)-methyltransferase BTM5-like	1.3E-64	71	352

GO

GO Term	Description	Terminal node
GO:0070475	rRNA base methylation	Yes
GO:0070042	rRNA (uridine-N3-)-methyltransferase activity	Yes
GO:0071704	organic substance metabolic process	No
GO:0034641	cellular nitrogen compound metabolic process	No
GO:0009451	RNA modification	No
GO:0031167	rRNA methylation	No
GO:0008152	metabolic process	No
GO:0001510	RNA methylation	No
GO:0043170	macromolecule metabolic process	No
GO:0044260	cellular macromolecule metabolic process	No
GO:0008168	methyltransferase activity	No
GO:0016740	transferase activity	No
GO:0046483	heterocycle metabolic process	No
GO:1901360	organic cyclic compound metabolic process	No
GO:0016741	transferase activity, transferring one-carbon groups	No
GO:0008150	biological_process	No
GO:0006396	RNA processing	No
GO:0006725	cellular aromatic compound metabolic process	No
GO:0016070	RNA metabolic process	No
GO:0006139	nucleobase-containing compound metabolic process	No
GO:0016436	rRNA (uridine) methyltransferase activity	No
GO:0003824	catalytic activity	No
GO:0008173	RNA methyltransferase activity	No
GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	No
GO:0034470	ncRNA processing	No
GO:0043414	macromolecule methylation	No
GO:0034660	ncRNA metabolic process	No
GO:0140640	catalytic activity, acting on a nucleic acid	No
GO:0044238	primary metabolic process	No
GO:0009987	cellular process	No
GO:0044237	cellular metabolic process	No
GO:0008649	rRNA methyltransferase activity	No
GO:0090304	nucleic acid metabolic process	No
GO:0043412	macromolecule modification	No
GO:0008170	N-methyltransferase activity	No
GO:0016072	rRNA metabolic process	No
GO:0140098	catalytic activity, acting on RNA	No
GO:0006364	rRNA processing	No
GO:0032259	methylation	No
GO:0006807	nitrogen compound metabolic process	No
GO:0000154	rRNA modification	No
GO:0003674	molecular_function	No
GO:0140102	catalytic activity, acting on a rRNA	No

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 15	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
3d_25C	Three days - 25 degrees Celsius	25.20	12.78	37.61
5d_25C	Five days - 25 degrees Celsius	27.53	14.27	40.79
7d_25C	Seven days - 25 degrees Celsius	28.10	14.48	41.71
10d_25C	Ten days - 25 degrees Celsius	39.83	22.17	57.50
7d_15C	Seven days - 15 degrees Celsius	21.77	10.50	33.03
7d_30C	Seven days - 30 degrees Celsius	33.44	18.02	48.85

Differential expression

Label1	Label2	Q-value	Significant difference
3d_25C	5d_25C	0.812016	no
3d_25C	7d_25C	0.769380	no
3d_25C	7d_15C	0.687726	no
3d_25C	7d_30C	0.324951	no
3d_25C	10d_25C	0.067273	no
5d_25C	7d_25C	0.964582	no
5d_25C	7d_15C	0.465161	no
5d_25C	7d_30C	0.529747	no
5d_25C	10d_25C	0.142821	no
7d_25C	7d_15C	0.427145	no
7d_25C	7d_30C	0.594390	no
7d_25C	10d_25C	0.191925	no
7d_15C	7d_30C	0.120353	no
7d_15C	10d_25C	0.022940	yes
7d_30C	10d_25C	0.562983	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Pro_DTO377G3_2\|g1606.t1 MPRNNKKVKNAPPPRARGPGKPSGPSSNPAKGQQHGNGQKQGSGNANPPKKASMQANQRPIVPFLRKDRILLIGE GDFSFARSLAKQYKCRNLCATCYDSKEVLYNKYPQAPQNVSDILSASAKSKLASNETENQPEESKSEDQDSTNPN PSANPNQQTPKVVFSVDARKLGAPAGGGKEIRTGFARRERKRPAWYQKDEPAGPPYQPGGAWDVICFNFPHVGGL STDVNRQVRSNQELLVAFFKACIPLVSKPPPLMDADDDEWVYADGEESEEEDEDEDEEGGEGQELGKDDDTTGKG FRTGPGQILVTLFEGEPYTLWNIRDLARHAGLVVVTSFRFPWTSYEGYSHARTVGHIEGKDGERGGWKGEDREAR MYVFEVKQKEPVKKGGKKRSRDDDSSDSE*
Coding	>Pro_DTO377G3_2\|g1606.t1 ATGCCTCGCAATAACAAGAAAGTCAAAAATGCCCCTCCGCCGCGCGCTCGCGGACCAGGCAAACCATCTGGCCCG TCTTCCAACCCTGCCAAGGGACAGCAGCATGGCAATGGGCAAAAGCAGGGAAGTGGTAATGCCAACCCACCTAAG AAAGCCTCCATGCAGGCGAACCAGAGACCTATCGTGCCGTTTTTAAGGAAGGATCGAATCCTCCTTATTGGTGAA GGTGACTTCTCATTCGCCCGTTCTCTTGCAAAACAATACAAGTGCCGCAACCTATGCGCCACATGCTACGATTCC AAAGAAGTGCTATACAACAAGTACCCGCAAGCTCCTCAGAACGTCTCAGATATCCTGAGCGCATCAGCAAAGTCA AAACTAGCAAGCAACGAGACCGAAAACCAGCCAGAAGAAAGCAAATCCGAAGACCAGGACTCAACCAACCCCAAC CCCAGTGCCAATCCCAACCAGCAAACCCCCAAAGTCGTCTTCTCGGTGGACGCGCGCAAACTCGGCGCTCCGGCA GGCGGCGGCAAGGAAATCCGCACAGGATTCGCACGCCGCGAGCGCAAGAGACCAGCCTGGTACCAGAAAGACGAG CCAGCAGGACCACCGTACCAGCCCGGTGGGGCGTGGGATGTGATCTGCTTCAATTTCCCGCATGTGGGTGGGCTT TCTACGGATGTGAACCGACAGGTTCGTTCGAATCAGGAGCTGCTGGTTGCATTCTTCAAGGCGTGTATACCGCTT GTTTCGAAGCCGCCGCCGCTTATGGATGCTGATGATGATGAGTGGGTGTATGCAGATGGAGAGGAGAGTGAAGAA GAAGATGAGGATGAGGATGAGGAAGGAGGAGAGGGCCAGGAGCTAGGAAAAGACGATGATACTACCGGGAAGGGA TTCCGGACTGGGCCTGGTCAGATCCTTGTTACTCTGTTCGAGGGTGAGCCATATACGCTTTGGAATATTAGGGAT TTGGCGAGGCATGCGGGGCTGGTTGTTGTGACTAGTTTCCGGTTTCCTTGGACTTCTTATGAGGGCTATTCTCAT GCGAGAACGGTAGGGCATATTGAAGGAAAGGATGGGGAGCGCGGCGGATGGAAGGGAGAGGATCGGGAGGCTCGG ATGTATGTCTTTGAAGTGAAGCAGAAGGAGCCGGTCAAGAAGGGAGGGAAGAAGAGAAGCCGCGATGATGATTCT AGTGATAGCGAGTAA
Transcript	>Pro_DTO377G3_2\|g1606.t1 ATGCCTCGCAATAACAAGAAAGTCAAAAATGCCCCTCCGCCGCGCGCTCGCGGACCAGGCAAACCATCTGGCCCG TCTTCCAACCCTGCCAAGGGACAGCAGCATGGCAATGGGCAAAAGCAGGGAAGTGGTAATGCCAACCCACCTAAG AAAGCCTCCATGCAGGCGAACCAGAGACCTATCGTGCCGTTTTTAAGGAAGGATCGAATCCTCCTTATTGGTGAA GGTGACTTCTCATTCGCCCGTTCTCTTGCAAAACAATACAAGTGCCGCAACCTATGCGCCACATGCTACGATTCC AAAGAAGTGCTATACAACAAGTACCCGCAAGCTCCTCAGAACGTCTCAGATATCCTGAGCGCATCAGCAAAGTCA AAACTAGCAAGCAACGAGACCGAAAACCAGCCAGAAGAAAGCAAATCCGAAGACCAGGACTCAACCAACCCCAAC CCCAGTGCCAATCCCAACCAGCAAACCCCCAAAGTCGTCTTCTCGGTGGACGCGCGCAAACTCGGCGCTCCGGCA GGCGGCGGCAAGGAAATCCGCACAGGATTCGCACGCCGCGAGCGCAAGAGACCAGCCTGGTACCAGAAAGACGAG CCAGCAGGACCACCGTACCAGCCCGGTGGGGCGTGGGATGTGATCTGCTTCAATTTCCCGCATGTGGGTGGGCTT TCTACGGATGTGAACCGACAGGTTCGTTCGAATCAGGAGCTGCTGGTTGCATTCTTCAAGGCGTGTATACCGCTT GTTTCGAAGCCGCCGCCGCTTATGGATGCTGATGATGATGAGTGGGTGTATGCAGATGGAGAGGAGAGTGAAGAA GAAGATGAGGATGAGGATGAGGAAGGAGGAGAGGGCCAGGAGCTAGGAAAAGACGATGATACTACCGGGAAGGGA TTCCGGACTGGGCCTGGTCAGATCCTTGTTACTCTGTTCGAGGGTGAGCCATATACGCTTTGGAATATTAGGGAT TTGGCGAGGCATGCGGGGCTGGTTGTTGTGACTAGTTTCCGGTTTCCTTGGACTTCTTATGAGGGCTATTCTCAT GCGAGAACGGTAGGGCATATTGAAGGAAAGGATGGGGAGCGCGGCGGATGGAAGGGAGAGGATCGGGAGGCTCGG ATGTATGTCTTTGAAGTGAAGCAGAAGGAGCCGGTCAAGAAGGGAGGGAAGAAGAGAAGCCGCGATGATGATTCT AGTGATAGCGAGTAA
Gene	>Pro_DTO377G3_2\|g1606.t1 ATGCCTCGCAATAACAAGAAAGTCAAAAATGCCCCTCCGCCGCGCGCTCGCGGACCAGGCAAACCATCTGGCCCG TCTTCCAACCCTGCCAAGGGACAGCAGCATGGCAATGGGCAAAAGCAGGGAAGTGGTAATGCCAACCCACCTAAG AAAGCCTCCATGCAGGCGAACCAGAGACCTATCGTGCCGTTTTTAAGGAAGGATCGAATCCTCCTTATTGGTGAA GGTGAGCTTTTCTTCTGATTTAGTTGACATGATTGCGCTGCGTTCTTCATTCTATGCAAGAATTTGGTTGCAATT AAGCTATATATGTATATTTTCCCATGGAGTCTATACCCAGAGCACTTTTACTGTGATATACGAGATTGGAACCAA TATGCATTCCTGTATAAGAACAAGATCATGTAACACGCTTCAACACCGATTTATCTATTACACCTGGAAACATAA ATTCTAACAGCAACCAGGTGACTTCTCATTCGCCCGTTCTCTTGCAAAACAATACAAGTGCCGCAACCTATGCGC CACATGCTACGATTCCAAAGAAGTGCTATACAACAAGTACCCGCAAGCTCCTCAGAACGTCTCAGATATCCTGAG CGCATCAGCAAAGTCAAAACTAGCAAGCAACGAGACCGAAAACCAGCCAGAAGAAAGCAAATCCGAAGACCAGGA CTCAACCAACCCCAACCCCAGTGCCAATCCCAACCAGCAAACCCCCAAAGTCGTCTTCTCGGTGGACGCGCGCAA ACTCGGCGCTCCGGCAGGCGGCGGCAAGGAAATCCGCACAGGATTCGCACGCCGCGAGCGCAAGAGACCAGCCTG GTACCAGAAAGACGAGCCAGCAGGACCACCGTACCAGCCCGGTGGGGCGTGGGATGTGATCTGCTTCAATTTCCC GCATGTGGGTGGGCTTTCTACGGATGTGAACCGACAGGTTCGTTCGAATCAGGAGCTGCTGGTTGCATTCTTCAA GGCGTGTATACCGCTTGTTTCGAAGCCGCCGCCGCTTATGGATGCTGATGATGATGAGTGGGTGTATGCAGATGG AGAGGAGAGTGAAGAAGAAGATGAGGATGAGGATGAGGAAGGAGGAGAGGGCCAGGAGCTAGGAAAAGACGATGA TACTACCGGGAAGGGATTCCGGACTGGGCCTGGTCAGATCCTTGTTACTCTGTTCGAGGGTGAGCCATATACGCT TTGGAATATTAGGGATTTGGCGAGGCATGCGGGGCTGGTTGTTGTGACTAGTTTCCGGTTTCCTTGGACTTCTTA TGAGGGCTATTCTCATGCGAGAACGGTAGGGCATATTGAAGGAAAGGATGGGGAGCGCGGCGGATGGAAGGGAGA GGATCGGGAGGCTCGGATGTATGTCTTTGAAGTGAAGCAGAAGGAGCCGGTCAAGAAGGGAGGGAAGAAGAGAAG CCGCGATGATGATTCTAGTGATAGCGAGTAA

Fungal Genomics

General Properties

PFAM Domains

GO

SignalP

Transmembrane Domains

Transcription Factor Class

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Sequences