Penicillium roqueforti LCP96 04111

General Properties

Protein ID	Pro_DTO377G3_2\|g1604.t1
Gene name
Location	scaffold_02:389192..390845
Strand	+
Gene length (bp)	1653
Transcript length (bp)	1422
Coding sequence length (bp)	1422
Protein length (aa)	474

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF08068	DKCLD	DKCLD (NUC011) domain	1.4E-30	24	81
PF01509	TruB_N	TruB family pseudouridylate synthase (N terminal domain)	1.7E-19	85	202
PF16198	TruB_C_2	tRNA pseudouridylate synthase B C-terminal domain	2.5E-22	203	269
PF01472	PUA	PUA domain	3.8E-21	273	345

GO

GO Term	Description	Terminal node
GO:0006396	RNA processing	Yes
GO:0003723	RNA binding	Yes
GO:0008152	metabolic process	No
GO:0043170	macromolecule metabolic process	No
GO:0006139	nucleobase-containing compound metabolic process	No
GO:0016070	RNA metabolic process	No
GO:0008150	biological_process	No
GO:0006725	cellular aromatic compound metabolic process	No
GO:0071704	organic substance metabolic process	No
GO:1901360	organic cyclic compound metabolic process	No
GO:0003676	nucleic acid binding	No
GO:0044238	primary metabolic process	No
GO:0005488	binding	No
GO:0034641	cellular nitrogen compound metabolic process	No
GO:0046483	heterocycle metabolic process	No
GO:0003674	molecular_function	No
GO:0006807	nitrogen compound metabolic process	No
GO:0097159	organic cyclic compound binding	No
GO:1901363	heterocyclic compound binding	No
GO:0090304	nucleic acid metabolic process	No
GO:0044237	cellular metabolic process	No
GO:0009987	cellular process	No

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 25	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Pro_DTO377G3_2\|g1604.t1 MAVVKTSEMDYAIKPEASVPSVDTSDWPLLLKNYEKLLVRTGHFTPIPAGSSPLSRDLKSYISSGVINLDKPSNP SSHEVVAWMKRILRAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKIPGGEAQFVRALE TLTGALFQRPPLISAVKRQLRIRTIHESKNYEFDNERHLGVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRV RSGAMGEGPGMVTLHDVMDAQWVYDNNRDESYLRKVISPLETLLTGYKRIVVKDSAVNAVCYGAKLMIPGLLRYE AGIECHEEVVLMTTKGEAIAIGIAQMSTVELTTCDHGVVAKVKRCIMERDLYPRRWGLGPTALEKKKMKTAGTLD KFGRTNEATPAQWKSEYKDFNLPITGTSAVAPAAETKTEAEPTKAESPEPVKEEVEDKKRKRDGETAEEKAERKK KKKEKKEKKERRKSKQDDSDDSD*
Coding	>Pro_DTO377G3_2\|g1604.t1 ATGGCAGTCGTCAAGACCTCGGAGATGGACTACGCCATCAAGCCTGAAGCGTCCGTTCCTTCCGTTGATACATCG GATTGGCCGCTTCTGCTTAAGAACTATGAGAAGCTGCTCGTTCGGACCGGTCACTTCACTCCTATCCCTGCTGGC TCCTCTCCCCTGAGCCGTGACTTGAAGTCATACATCAGCTCCGGTGTCATCAACCTTGACAAGCCGTCGAACCCT TCCAGTCATGAAGTCGTGGCTTGGATGAAGCGGATCCTCAGAGCCGAGAAGACTGGTCACAGTGGTACCCTTGAT CCCAAGGTCACCGGTTGTTTGATCGTCTGCATTGACCGTGCCACTCGCCTGGTCAAGTCCCAGCAGGGTGCCGGT AAGGAGTATGTCTGTGTGATTCGTCTCCACGACAAGATTCCCGGTGGCGAAGCCCAATTCGTCCGCGCTCTGGAG ACCTTGACTGGTGCGCTCTTCCAGCGTCCCCCTCTGATCTCCGCTGTCAAGCGCCAGCTCCGTATCCGTACTATC CACGAGAGCAAGAACTACGAGTTCGACAATGAGCGCCACCTCGGTGTCTTCTGGGTCAGCTGTGAGGCTGGTACC TACATCCGTACCCTCTGTGTCCACCTGGGTCTTCTCCTCGGTGTCGGTGCCCACATGCAGGAACTTCGCCGTGTT CGCTCTGGAGCTATGGGTGAGGGCCCTGGTATGGTCACTCTGCACGATGTTATGGACGCCCAGTGGGTCTACGAC AACAACCGCGACGAGTCTTACCTCCGCAAGGTCATCAGCCCCCTAGAGACTTTGCTTACCGGCTACAAGCGTATT GTCGTTAAGGACAGCGCTGTCAACGCCGTCTGCTACGGTGCTAAGCTCATGATTCCTGGTCTTCTCCGCTACGAG GCCGGTATTGAGTGCCACGAGGAGGTTGTCCTCATGACCACCAAGGGTGAGGCTATCGCCATTGGTATCGCTCAG ATGTCCACTGTCGAGCTCACCACCTGCGACCACGGCGTTGTTGCCAAGGTCAAACGTTGCATCATGGAGCGTGAC CTTTACCCCCGCCGCTGGGGCTTGGGACCCACTGCCCTTGAGAAGAAGAAGATGAAGACCGCTGGAACTCTCGAT AAATTCGGCCGCACCAACGAGGCCACACCCGCCCAATGGAAGAGCGAGTACAAGGACTTCAACCTTCCCATCACT GGAACCTCCGCTGTTGCACCCGCCGCTGAGACTAAGACCGAGGCCGAACCCACTAAGGCGGAGTCCCCCGAGCCC GTGAAGGAGGAAGTCGAAGACAAGAAGCGCAAGCGCGACGGCGAGACAGCCGAGGAGAAGGCCGAGCGCAAGAAG AAGAAGAAGGAGAAGAAGGAAAAGAAGGAGCGTCGGAAGTCCAAGCAGGATGATAGCGATGACAGCGATTAG
Transcript	>Pro_DTO377G3_2\|g1604.t1 ATGGCAGTCGTCAAGACCTCGGAGATGGACTACGCCATCAAGCCTGAAGCGTCCGTTCCTTCCGTTGATACATCG GATTGGCCGCTTCTGCTTAAGAACTATGAGAAGCTGCTCGTTCGGACCGGTCACTTCACTCCTATCCCTGCTGGC TCCTCTCCCCTGAGCCGTGACTTGAAGTCATACATCAGCTCCGGTGTCATCAACCTTGACAAGCCGTCGAACCCT TCCAGTCATGAAGTCGTGGCTTGGATGAAGCGGATCCTCAGAGCCGAGAAGACTGGTCACAGTGGTACCCTTGAT CCCAAGGTCACCGGTTGTTTGATCGTCTGCATTGACCGTGCCACTCGCCTGGTCAAGTCCCAGCAGGGTGCCGGT AAGGAGTATGTCTGTGTGATTCGTCTCCACGACAAGATTCCCGGTGGCGAAGCCCAATTCGTCCGCGCTCTGGAG ACCTTGACTGGTGCGCTCTTCCAGCGTCCCCCTCTGATCTCCGCTGTCAAGCGCCAGCTCCGTATCCGTACTATC CACGAGAGCAAGAACTACGAGTTCGACAATGAGCGCCACCTCGGTGTCTTCTGGGTCAGCTGTGAGGCTGGTACC TACATCCGTACCCTCTGTGTCCACCTGGGTCTTCTCCTCGGTGTCGGTGCCCACATGCAGGAACTTCGCCGTGTT CGCTCTGGAGCTATGGGTGAGGGCCCTGGTATGGTCACTCTGCACGATGTTATGGACGCCCAGTGGGTCTACGAC AACAACCGCGACGAGTCTTACCTCCGCAAGGTCATCAGCCCCCTAGAGACTTTGCTTACCGGCTACAAGCGTATT GTCGTTAAGGACAGCGCTGTCAACGCCGTCTGCTACGGTGCTAAGCTCATGATTCCTGGTCTTCTCCGCTACGAG GCCGGTATTGAGTGCCACGAGGAGGTTGTCCTCATGACCACCAAGGGTGAGGCTATCGCCATTGGTATCGCTCAG ATGTCCACTGTCGAGCTCACCACCTGCGACCACGGCGTTGTTGCCAAGGTCAAACGTTGCATCATGGAGCGTGAC CTTTACCCCCGCCGCTGGGGCTTGGGACCCACTGCCCTTGAGAAGAAGAAGATGAAGACCGCTGGAACTCTCGAT AAATTCGGCCGCACCAACGAGGCCACACCCGCCCAATGGAAGAGCGAGTACAAGGACTTCAACCTTCCCATCACT GGAACCTCCGCTGTTGCACCCGCCGCTGAGACTAAGACCGAGGCCGAACCCACTAAGGCGGAGTCCCCCGAGCCC GTGAAGGAGGAAGTCGAAGACAAGAAGCGCAAGCGCGACGGCGAGACAGCCGAGGAGAAGGCCGAGCGCAAGAAG AAGAAGAAGGAGAAGAAGGAAAAGAAGGAGCGTCGGAAGTCCAAGCAGGATGATAGCGATGACAGCGATTAG
Gene	>Pro_DTO377G3_2\|g1604.t1 ATGGCAGTCGTCAAGACCTCGGAGATGGACTACGCCATCAAGCCTGAAGCGTCCGTTCCTTCCGTTGATACATCG GATTGGCCGCTTCTGCTTAAGAACTATGAGAAGCGTACGCTTGTCCTTAAAACTCCACGCTTGACCAGCCGACAT TGACTTCTTTTGTAGTGCTCGTTCGGACCGGTCACTTCACTCCTATCCCTGCTGGCTCCTCTCCCCTGAGCCGTG ACTTGAAGTCATACATCAGCTCCGGTGTCATCAACCTTGACAAGCCGTCGAACCCTTCCAGTCATGAAGTCGTGG CTTGGATGAAGCGGATCCTCAGGTAAATAAAAGTCCATCAGAACCCCTCAATGGTTTCGCACTTTTGCTGACCAC ATTCCCCTCTGTAGAGCCGAGAAGACTGGTCACAGTGGTACCCTTGATCCCAAGGTCACCGGTTGTTTGATCGTC TGCATTGACCGTGCCACTCGCCTGGTCAAGTCCCAGCAGGGTGCCGGTAAGGAGTATGTCTGTGTGATTCGTCTC CACGACAAGATTCCCGGTGGCGAAGCCCAATTCGTCCGCGCTCTGGAGACCTTGACTGGTGCGCTCTTCCAGCGT CCCCCTCTGATCTCCGCTGTCAAGCGCCAGCTCCGTATCCGTACTATCCACGAGAGCAAGAACTACGAGTTCGAC AATGAGCGCCACCTCGGTGTCTTCTGGGTCAGCTGTGAGGCTGGTACCTACATCCGTACCCTCTGTGTCCACCTG GGTCTTCTCCTCGGTGTCGGTGCCCACATGCAGGAACTTCGCCGTGTTCGCTCTGGAGCTATGGGTGAGGGCCCT GGTATGGTCACTCTGCACGATGTTATGGACGCCCAGTGGGTCTACGACAACAACCGCGACGAGTCTTACCTCCGC AAGGTCATCAGCCCCCTAGAGACTTTGCTTACCGGCTACAAGCGTATTGTCGTTAAGGACAGCGCTGTCAACGCC GTCTGCTACGGTGCTAAGCTCATGATTCCTGGTCTTCTCCGCTACGGTATGTAAATTTCTTGCCCCTGAGTTTTT CTTGACCATTACTAATTCTTTCTTCAGAGGCCGGTATTGAGTGCCACGAGGAGGTTGTCCTCATGACCACCAAGG GTGAGGCTATCGCCATTGGTATCGCTCAGATGTCCACTGTCGAGCTCACCACCTGCGACCACGGCGTTGTTGCCA AGGTCAAACGTTGCATCATGGAGCGTGACCTTTACCCCCGCCGCTGGGGCTTGGGACCCACTGCCCTTGAGAAGA AGAAGATGAAGACCGCTGGAACTCTCGATGTAAGTGGCTAAGCAGCCTTCTCTTTCGTCCAATGTACTAACTTGC TCTCAGAAATTCGGCCGCACCAACGAGGCCACACCCGCCCAATGGAAGAGCGAGTACAAGGACTTCAACCTTCCC ATCACTGGAACCTCCGCTGTTGCACCCGCCGCTGAGACTAAGACCGAGGCCGAACCCACTAAGGCGGAGTCCCCC GAGCCCGTGAAGGAGGAAGTCGAAGACAAGAAGCGCAAGCGCGACGGCGAGACAGCCGAGGAGAAGGCCGAGCGC AAGAAGAAGAAGAAGGAGAAGAAGGAAAAGAAGGAGCGTCGGAAGTCCAAGCAGGATGATAGCGATGACAGCGAT TAG

Fungal Genomics

General Properties

PFAM Domains

GO

SignalP

Transmembrane Domains

Transcription Factor Class

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Sequences