Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g1604.t1
Gene name
Locationscaffold_02:389192..390845
Strand+
Gene length (bp)1653
Transcript length (bp)1422
Coding sequence length (bp)1422
Protein length (aa) 474

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF08068 DKCLD DKCLD (NUC011) domain 1.4E-30 24 81
PF01509 TruB_N TruB family pseudouridylate synthase (N terminal domain) 1.7E-19 85 202
PF16198 TruB_C_2 tRNA pseudouridylate synthase B C-terminal domain 2.5E-22 203 269
PF01472 PUA PUA domain 3.8E-21 273 345

GO

GO Term Description Terminal node
GO:0006396 RNA processing Yes
GO:0003723 RNA binding Yes
GO:0008152 metabolic process No
GO:0043170 macromolecule metabolic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0016070 RNA metabolic process No
GO:0008150 biological_process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0071704 organic substance metabolic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0003676 nucleic acid binding No
GO:0044238 primary metabolic process No
GO:0005488 binding No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0046483 heterocycle metabolic process No
GO:0003674 molecular_function No
GO:0006807 nitrogen compound metabolic process No
GO:0097159 organic cyclic compound binding No
GO:1901363 heterocyclic compound binding No
GO:0090304 nucleic acid metabolic process No
GO:0044237 cellular metabolic process No
GO:0009987 cellular process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 25 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g1604.t1
MAVVKTSEMDYAIKPEASVPSVDTSDWPLLLKNYEKLLVRTGHFTPIPAGSSPLSRDLKSYISSGVINLDKPSNP
SSHEVVAWMKRILRAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKIPGGEAQFVRALE
TLTGALFQRPPLISAVKRQLRIRTIHESKNYEFDNERHLGVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRV
RSGAMGEGPGMVTLHDVMDAQWVYDNNRDESYLRKVISPLETLLTGYKRIVVKDSAVNAVCYGAKLMIPGLLRYE
AGIECHEEVVLMTTKGEAIAIGIAQMSTVELTTCDHGVVAKVKRCIMERDLYPRRWGLGPTALEKKKMKTAGTLD
KFGRTNEATPAQWKSEYKDFNLPITGTSAVAPAAETKTEAEPTKAESPEPVKEEVEDKKRKRDGETAEEKAERKK
KKKEKKEKKERRKSKQDDSDDSD*
Coding >Pro_DTO377G3_2|g1604.t1
ATGGCAGTCGTCAAGACCTCGGAGATGGACTACGCCATCAAGCCTGAAGCGTCCGTTCCTTCCGTTGATACATCG
GATTGGCCGCTTCTGCTTAAGAACTATGAGAAGCTGCTCGTTCGGACCGGTCACTTCACTCCTATCCCTGCTGGC
TCCTCTCCCCTGAGCCGTGACTTGAAGTCATACATCAGCTCCGGTGTCATCAACCTTGACAAGCCGTCGAACCCT
TCCAGTCATGAAGTCGTGGCTTGGATGAAGCGGATCCTCAGAGCCGAGAAGACTGGTCACAGTGGTACCCTTGAT
CCCAAGGTCACCGGTTGTTTGATCGTCTGCATTGACCGTGCCACTCGCCTGGTCAAGTCCCAGCAGGGTGCCGGT
AAGGAGTATGTCTGTGTGATTCGTCTCCACGACAAGATTCCCGGTGGCGAAGCCCAATTCGTCCGCGCTCTGGAG
ACCTTGACTGGTGCGCTCTTCCAGCGTCCCCCTCTGATCTCCGCTGTCAAGCGCCAGCTCCGTATCCGTACTATC
CACGAGAGCAAGAACTACGAGTTCGACAATGAGCGCCACCTCGGTGTCTTCTGGGTCAGCTGTGAGGCTGGTACC
TACATCCGTACCCTCTGTGTCCACCTGGGTCTTCTCCTCGGTGTCGGTGCCCACATGCAGGAACTTCGCCGTGTT
CGCTCTGGAGCTATGGGTGAGGGCCCTGGTATGGTCACTCTGCACGATGTTATGGACGCCCAGTGGGTCTACGAC
AACAACCGCGACGAGTCTTACCTCCGCAAGGTCATCAGCCCCCTAGAGACTTTGCTTACCGGCTACAAGCGTATT
GTCGTTAAGGACAGCGCTGTCAACGCCGTCTGCTACGGTGCTAAGCTCATGATTCCTGGTCTTCTCCGCTACGAG
GCCGGTATTGAGTGCCACGAGGAGGTTGTCCTCATGACCACCAAGGGTGAGGCTATCGCCATTGGTATCGCTCAG
ATGTCCACTGTCGAGCTCACCACCTGCGACCACGGCGTTGTTGCCAAGGTCAAACGTTGCATCATGGAGCGTGAC
CTTTACCCCCGCCGCTGGGGCTTGGGACCCACTGCCCTTGAGAAGAAGAAGATGAAGACCGCTGGAACTCTCGAT
AAATTCGGCCGCACCAACGAGGCCACACCCGCCCAATGGAAGAGCGAGTACAAGGACTTCAACCTTCCCATCACT
GGAACCTCCGCTGTTGCACCCGCCGCTGAGACTAAGACCGAGGCCGAACCCACTAAGGCGGAGTCCCCCGAGCCC
GTGAAGGAGGAAGTCGAAGACAAGAAGCGCAAGCGCGACGGCGAGACAGCCGAGGAGAAGGCCGAGCGCAAGAAG
AAGAAGAAGGAGAAGAAGGAAAAGAAGGAGCGTCGGAAGTCCAAGCAGGATGATAGCGATGACAGCGATTAG
Transcript >Pro_DTO377G3_2|g1604.t1
ATGGCAGTCGTCAAGACCTCGGAGATGGACTACGCCATCAAGCCTGAAGCGTCCGTTCCTTCCGTTGATACATCG
GATTGGCCGCTTCTGCTTAAGAACTATGAGAAGCTGCTCGTTCGGACCGGTCACTTCACTCCTATCCCTGCTGGC
TCCTCTCCCCTGAGCCGTGACTTGAAGTCATACATCAGCTCCGGTGTCATCAACCTTGACAAGCCGTCGAACCCT
TCCAGTCATGAAGTCGTGGCTTGGATGAAGCGGATCCTCAGAGCCGAGAAGACTGGTCACAGTGGTACCCTTGAT
CCCAAGGTCACCGGTTGTTTGATCGTCTGCATTGACCGTGCCACTCGCCTGGTCAAGTCCCAGCAGGGTGCCGGT
AAGGAGTATGTCTGTGTGATTCGTCTCCACGACAAGATTCCCGGTGGCGAAGCCCAATTCGTCCGCGCTCTGGAG
ACCTTGACTGGTGCGCTCTTCCAGCGTCCCCCTCTGATCTCCGCTGTCAAGCGCCAGCTCCGTATCCGTACTATC
CACGAGAGCAAGAACTACGAGTTCGACAATGAGCGCCACCTCGGTGTCTTCTGGGTCAGCTGTGAGGCTGGTACC
TACATCCGTACCCTCTGTGTCCACCTGGGTCTTCTCCTCGGTGTCGGTGCCCACATGCAGGAACTTCGCCGTGTT
CGCTCTGGAGCTATGGGTGAGGGCCCTGGTATGGTCACTCTGCACGATGTTATGGACGCCCAGTGGGTCTACGAC
AACAACCGCGACGAGTCTTACCTCCGCAAGGTCATCAGCCCCCTAGAGACTTTGCTTACCGGCTACAAGCGTATT
GTCGTTAAGGACAGCGCTGTCAACGCCGTCTGCTACGGTGCTAAGCTCATGATTCCTGGTCTTCTCCGCTACGAG
GCCGGTATTGAGTGCCACGAGGAGGTTGTCCTCATGACCACCAAGGGTGAGGCTATCGCCATTGGTATCGCTCAG
ATGTCCACTGTCGAGCTCACCACCTGCGACCACGGCGTTGTTGCCAAGGTCAAACGTTGCATCATGGAGCGTGAC
CTTTACCCCCGCCGCTGGGGCTTGGGACCCACTGCCCTTGAGAAGAAGAAGATGAAGACCGCTGGAACTCTCGAT
AAATTCGGCCGCACCAACGAGGCCACACCCGCCCAATGGAAGAGCGAGTACAAGGACTTCAACCTTCCCATCACT
GGAACCTCCGCTGTTGCACCCGCCGCTGAGACTAAGACCGAGGCCGAACCCACTAAGGCGGAGTCCCCCGAGCCC
GTGAAGGAGGAAGTCGAAGACAAGAAGCGCAAGCGCGACGGCGAGACAGCCGAGGAGAAGGCCGAGCGCAAGAAG
AAGAAGAAGGAGAAGAAGGAAAAGAAGGAGCGTCGGAAGTCCAAGCAGGATGATAGCGATGACAGCGATTAG
Gene >Pro_DTO377G3_2|g1604.t1
ATGGCAGTCGTCAAGACCTCGGAGATGGACTACGCCATCAAGCCTGAAGCGTCCGTTCCTTCCGTTGATACATCG
GATTGGCCGCTTCTGCTTAAGAACTATGAGAAGCGTACGCTTGTCCTTAAAACTCCACGCTTGACCAGCCGACAT
TGACTTCTTTTGTAGTGCTCGTTCGGACCGGTCACTTCACTCCTATCCCTGCTGGCTCCTCTCCCCTGAGCCGTG
ACTTGAAGTCATACATCAGCTCCGGTGTCATCAACCTTGACAAGCCGTCGAACCCTTCCAGTCATGAAGTCGTGG
CTTGGATGAAGCGGATCCTCAGGTAAATAAAAGTCCATCAGAACCCCTCAATGGTTTCGCACTTTTGCTGACCAC
ATTCCCCTCTGTAGAGCCGAGAAGACTGGTCACAGTGGTACCCTTGATCCCAAGGTCACCGGTTGTTTGATCGTC
TGCATTGACCGTGCCACTCGCCTGGTCAAGTCCCAGCAGGGTGCCGGTAAGGAGTATGTCTGTGTGATTCGTCTC
CACGACAAGATTCCCGGTGGCGAAGCCCAATTCGTCCGCGCTCTGGAGACCTTGACTGGTGCGCTCTTCCAGCGT
CCCCCTCTGATCTCCGCTGTCAAGCGCCAGCTCCGTATCCGTACTATCCACGAGAGCAAGAACTACGAGTTCGAC
AATGAGCGCCACCTCGGTGTCTTCTGGGTCAGCTGTGAGGCTGGTACCTACATCCGTACCCTCTGTGTCCACCTG
GGTCTTCTCCTCGGTGTCGGTGCCCACATGCAGGAACTTCGCCGTGTTCGCTCTGGAGCTATGGGTGAGGGCCCT
GGTATGGTCACTCTGCACGATGTTATGGACGCCCAGTGGGTCTACGACAACAACCGCGACGAGTCTTACCTCCGC
AAGGTCATCAGCCCCCTAGAGACTTTGCTTACCGGCTACAAGCGTATTGTCGTTAAGGACAGCGCTGTCAACGCC
GTCTGCTACGGTGCTAAGCTCATGATTCCTGGTCTTCTCCGCTACGGTATGTAAATTTCTTGCCCCTGAGTTTTT
CTTGACCATTACTAATTCTTTCTTCAGAGGCCGGTATTGAGTGCCACGAGGAGGTTGTCCTCATGACCACCAAGG
GTGAGGCTATCGCCATTGGTATCGCTCAGATGTCCACTGTCGAGCTCACCACCTGCGACCACGGCGTTGTTGCCA
AGGTCAAACGTTGCATCATGGAGCGTGACCTTTACCCCCGCCGCTGGGGCTTGGGACCCACTGCCCTTGAGAAGA
AGAAGATGAAGACCGCTGGAACTCTCGATGTAAGTGGCTAAGCAGCCTTCTCTTTCGTCCAATGTACTAACTTGC
TCTCAGAAATTCGGCCGCACCAACGAGGCCACACCCGCCCAATGGAAGAGCGAGTACAAGGACTTCAACCTTCCC
ATCACTGGAACCTCCGCTGTTGCACCCGCCGCTGAGACTAAGACCGAGGCCGAACCCACTAAGGCGGAGTCCCCC
GAGCCCGTGAAGGAGGAAGTCGAAGACAAGAAGCGCAAGCGCGACGGCGAGACAGCCGAGGAGAAGGCCGAGCGC
AAGAAGAAGAAGAAGGAGAAGAAGGAAAAGAAGGAGCGTCGGAAGTCCAAGCAGGATGATAGCGATGACAGCGAT
TAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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