Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g1578.t1
Gene name
Locationscaffold_02:333292..333861
Strand+
Gene length (bp)569
Transcript length (bp)369
Coding sequence length (bp)369
Protein length (aa) 123

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05129 Elf1 Transcription elongation factor Elf1 like 9.9E-30 2 79

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 13 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g1578.t1
MGKRKKSSSKPQGPKKREPLATTFSCLFCNHENSVVVKLDKKLGLGDLSCKVCGQKFQTGINYLSAPVDVYSDWV
DACDAVAKDTANQYDAPVSSHLGQRGISKQGISGETGQDDGYDDDEY*
Coding >Pro_DTO377G3_2|g1578.t1
ATGGGCAAGCGCAAGAAGTCAAGCTCCAAGCCCCAAGGGCCTAAGAAGAGGGAGCCTCTTGCTACCACATTCTCC
TGTCTCTTTTGCAACCATGAGAACTCTGTGGTCGTCAAGCTAGACAAGAAGCTTGGCCTTGGCGATCTATCGTGC
AAAGTTTGTGGTCAAAAGTTCCAAACCGGTATCAATTATCTTTCTGCTCCCGTGGATGTGTATTCAGATTGGGTA
GATGCATGTGATGCAGTTGCGAAGGACACTGCCAATCAGTATGATGCACCGGTTTCTAGTCACTTGGGACAGAGA
GGGATCAGCAAGCAGGGCATATCTGGAGAGACTGGGCAGGACGATGGCTACGATGATGATGAATACTGA
Transcript >Pro_DTO377G3_2|g1578.t1
ATGGGCAAGCGCAAGAAGTCAAGCTCCAAGCCCCAAGGGCCTAAGAAGAGGGAGCCTCTTGCTACCACATTCTCC
TGTCTCTTTTGCAACCATGAGAACTCTGTGGTCGTCAAGCTAGACAAGAAGCTTGGCCTTGGCGATCTATCGTGC
AAAGTTTGTGGTCAAAAGTTCCAAACCGGTATCAATTATCTTTCTGCTCCCGTGGATGTGTATTCAGATTGGGTA
GATGCATGTGATGCAGTTGCGAAGGACACTGCCAATCAGTATGATGCACCGGTTTCTAGTCACTTGGGACAGAGA
GGGATCAGCAAGCAGGGCATATCTGGAGAGACTGGGCAGGACGATGGCTACGATGATGATGAATACTGA
Gene >Pro_DTO377G3_2|g1578.t1
ATGGTACGTGCTATCGAATTTCCTTCCCCGACTGCCCTGACCCGCCCGACCCCCCCGACCGTGGATAGATGTTAA
TTTAAACAGGGCAAGCGCAAGAAGTCAAGCTCCAAGCCCCAAGGGCCTAAGAAGGTAAACGATTCACAAGTCGCC
AGGCTTTACACCCAGTACTGACTGTGAAATATAGAGGGAGCCTCTTGCTACCACATTCTCCTGTCTCTTTTGCAA
CCATGAGAACTCTGTGGTCGTCAAGCTAGACAAGAAGCTTGGCCTTGGCGATCTATCGTGCAAAGTTTGTGGTCA
AAAGTTCCAAACCGGTATCAATTGTGAGTCGATAATTCGGCCTAAGGCATCAGTCGTAACTGGTTTGACTAACAC
AATGCTTCAAAGATCTTTCTGCTCCCGTGGATGTGTATTCAGATTGGGTAGATGCATGTGATGCAGTTGCGAAGG
ACACTGCCAATCAGTATGATGCACCGGTTTCTAGTCACTTGGGACAGAGAGGGATCAGCAAGCAGGGCATATCTG
GAGAGACTGGGCAGGACGATGGCTACGATGATGATGAATACTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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