Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g1566.t1
Gene name
Locationscaffold_02:303865..304957
Strand-
Gene length (bp)1092
Transcript length (bp)933
Coding sequence length (bp)933
Protein length (aa) 311

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF13561 adh_short_C2 Enoyl-(Acyl carrier protein) reductase 4.0E-59 76 306
PF00106 adh_short short chain dehydrogenase 3.5E-47 67 255
PF08659 KR KR domain 6.1E-13 70 235

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 47 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 1.99 0.18 3.79
5d_25C Five days - 25 degrees Celsius 7.49 2.29 12.68
7d_25C Seven days - 25 degrees Celsius 20.47 9.01 31.93
10d_25C Ten days - 25 degrees Celsius 42.82 22.64 63.00
7d_15C Seven days - 15 degrees Celsius 6.59 1.75 11.43
7d_30C Seven days - 30 degrees Celsius 9.65 3.09 16.20

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.002761 yes
3d_25C 7d_25C 0.000700 yes
3d_25C 7d_15C 0.008133 yes
3d_25C 7d_30C 0.000700 yes
3d_25C 10d_25C 0.000700 yes
5d_25C 7d_25C 0.001278 yes
5d_25C 7d_15C 0.821043 no
5d_25C 7d_30C 0.585523 no
5d_25C 10d_25C 0.000700 yes
7d_25C 7d_15C 0.003197 yes
7d_25C 7d_30C 0.025858 yes
7d_25C 10d_25C 0.006371 yes
7d_15C 7d_30C 0.397449 no
7d_15C 10d_25C 0.000700 yes
7d_30C 10d_25C 0.000700 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g1566.t1
MPVAQYIEREASGAKSQFAPGHKIPIQHLTRPGLQSDMGDPKPVSAHLPTEDGGYQTYKAAGKLEGKRAIITGGD
SGIGRAVAILFAMEGASSFIVYLPAEESDAQETKRRVEECGQKCYTLAIDVRKKENCQKIINEALEKMGGIDILV
NNAGFQNMLSDISEVTEDQWQTTFDTNIHPFYYLSKYVLPHMKRGATIINCASVNPYIGRADLLDYTSSKGAIVA
FTRALSNQQVKKGIRVNCVCPGPIWTPLIPATMQTEAMEQFHAVPIGRPGQPSEVATCFVFLASQDSSYISGQCL
HPNGGVIVSG*
Coding >Pro_DTO377G3_2|g1566.t1
ATGCCTGTTGCCCAGTATATCGAGCGAGAGGCCAGTGGGGCTAAGTCCCAATTTGCGCCAGGTCACAAGATTCCT
ATTCAGCACTTGACAAGGCCGGGTCTGCAGTCTGACATGGGAGATCCTAAGCCTGTGTCTGCTCATCTTCCTACC
GAGGATGGCGGTTACCAGACCTACAAGGCCGCTGGAAAGCTCGAAGGAAAGAGAGCAATCATCACCGGCGGTGAC
TCCGGCATTGGCCGGGCAGTTGCAATCCTATTTGCAATGGAGGGTGCCTCAAGCTTCATCGTTTACCTGCCAGCT
GAGGAGTCGGATGCGCAAGAGACAAAGAGGAGAGTCGAGGAATGTGGACAGAAGTGCTATACTCTCGCTATCGAC
GTTCGCAAGAAGGAAAACTGTCAAAAGATCATCAACGAGGCCCTGGAAAAGATGGGTGGCATTGACATTCTGGTG
AACAATGCCGGGTTCCAAAACATGCTGAGCGATATCAGCGAGGTCACTGAAGACCAGTGGCAGACCACCTTTGAC
ACCAATATTCACCCCTTCTATTATCTTTCCAAGTATGTTCTTCCGCATATGAAGCGGGGAGCTACCATCATCAAT
TGCGCATCCGTCAATCCTTACATTGGCCGAGCGGATCTCCTGGATTACACCTCCAGCAAAGGAGCAATTGTCGCA
TTTACCCGCGCCTTGTCGAACCAGCAGGTGAAGAAAGGCATTCGGGTCAATTGTGTCTGCCCGGGTCCAATCTGG
ACGCCCCTGATTCCTGCGACAATGCAAACCGAGGCCATGGAACAATTCCATGCAGTGCCGATTGGTCGACCAGGA
CAACCTAGCGAGGTCGCAACGTGCTTCGTTTTCCTCGCAAGCCAGGACAGCAGCTATATTTCCGGACAATGTTTG
CACCCCAACGGAGGTGTCATCGTCAGTGGATAG
Transcript >Pro_DTO377G3_2|g1566.t1
ATGCCTGTTGCCCAGTATATCGAGCGAGAGGCCAGTGGGGCTAAGTCCCAATTTGCGCCAGGTCACAAGATTCCT
ATTCAGCACTTGACAAGGCCGGGTCTGCAGTCTGACATGGGAGATCCTAAGCCTGTGTCTGCTCATCTTCCTACC
GAGGATGGCGGTTACCAGACCTACAAGGCCGCTGGAAAGCTCGAAGGAAAGAGAGCAATCATCACCGGCGGTGAC
TCCGGCATTGGCCGGGCAGTTGCAATCCTATTTGCAATGGAGGGTGCCTCAAGCTTCATCGTTTACCTGCCAGCT
GAGGAGTCGGATGCGCAAGAGACAAAGAGGAGAGTCGAGGAATGTGGACAGAAGTGCTATACTCTCGCTATCGAC
GTTCGCAAGAAGGAAAACTGTCAAAAGATCATCAACGAGGCCCTGGAAAAGATGGGTGGCATTGACATTCTGGTG
AACAATGCCGGGTTCCAAAACATGCTGAGCGATATCAGCGAGGTCACTGAAGACCAGTGGCAGACCACCTTTGAC
ACCAATATTCACCCCTTCTATTATCTTTCCAAGTATGTTCTTCCGCATATGAAGCGGGGAGCTACCATCATCAAT
TGCGCATCCGTCAATCCTTACATTGGCCGAGCGGATCTCCTGGATTACACCTCCAGCAAAGGAGCAATTGTCGCA
TTTACCCGCGCCTTGTCGAACCAGCAGGTGAAGAAAGGCATTCGGGTCAATTGTGTCTGCCCGGGTCCAATCTGG
ACGCCCCTGATTCCTGCGACAATGCAAACCGAGGCCATGGAACAATTCCATGCAGTGCCGATTGGTCGACCAGGA
CAACCTAGCGAGGTCGCAACGTGCTTCGTTTTCCTCGCAAGCCAGGACAGCAGCTATATTTCCGGACAATGTTTG
CACCCCAACGGAGGTGTCATCGTCAGTGGATAG
Gene >Pro_DTO377G3_2|g1566.t1
ATGCCTGTTGCCCAGTATATCGAGCGAGAGGCCAGTGGGGCTAAGTCCCAATTTGCGCCAGGTGAGTACGTGTGA
TTTATGTGAAGTATTGATTCCTGACACAGTGCTTCATATAGGTCACAAGATTCCTATTCAGCACTTGACAAGGCC
GGGTCTGCAGTCTGACATGGGAGATCCTAAGCCTGTGTCTGCTCATCTTCCTACCGAGGATGGCGGTTACCAGAC
CTACAAGGCCGCTGGAAAGCTCGAAGGAAAGAGAGCAATCATCACCGGCGGTGACTCCGGCATTGGCCGGGCAGT
TGCAATCCTATTTGCAATGGAGGGTGCCTCAAGCTTCATCGTTTACCTGCCAGCTGAGGAGTCGGATGCGCAAGA
GACAAAGAGGAGAGTCGAGGAATGTGGACAGAAGTGCTATACTCTCGCTATCGACGTTCGCAAGAAGGAAAACTG
TCAAAAGATCATCAACGAGGCCCTGGAAAAGATGGGTGGCATTGACATTCTGGTGAACAATGCCGGGTTCCAAAA
CATGCTGAGCGATATCAGCGAGGTCACTGAGTGAGTTGCCCCATATTACTGCTCTTCGGCTGTTGCATCCTACTA
ATGAACCATCAGAGACCAGTGGCAGACCACCTTTGACACCAATATTCACCCCTTCTATTATCTTTCCAAGTATGT
TCTTCCGCATATGAAGCGGGGAGCTACCATCATCAATTGCGCATCCGTCAATCCTTACATTGGCCGAGCGGATCT
CCTGGATTACACCTCCAGCAAAGGAGCAATTGTCGCATTTACCCGCGCCTTGTCGAACCAGCAGGTGAAGAAAGG
CATTCGGGTCAATTGTGTCTGCCCGGGTCCAAGTAGGTCCTTCCTATATCTATTCCAAGTCAAATGCTAATAAGA
CAAGTCTGGACGCCCCTGATTCCTGCGACAATGCAAACCGAGGCCATGGAACAATTCCATGCAGTGCCGATTGGT
CGACCAGGACAACCTAGCGAGGTCGCAACGTGCTTCGTTTTCCTCGCAAGCCAGGACAGCAGCTATATTTCCGGA
CAATGTTTGCACCCCAACGGAGGTGTCATCGTCAGTGGATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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