© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1561.t1 |
| Gene name | |
| Location | scaffold_02:297422..298024 |
| Strand | + |
| Gene length (bp) | 602 |
| Transcript length (bp) | 474 |
| Coding sequence length (bp) | 474 |
| Protein length (aa) | 158 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00462 | Glutaredoxin | Glutaredoxin | 3.9E-15 | 60 | 127 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0097573 | glutathione oxidoreductase activity | Yes |
| GO:0016491 | oxidoreductase activity | No |
| GO:0015035 | protein-disulfide reductase activity | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0015036 | disulfide oxidoreductase activity | No |
| GO:0016667 | oxidoreductase activity, acting on a sulfur group of donors | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 332.18 | 202.10 | 462.26 |
| 5d_25C | Five days - 25 degrees Celsius | 347.77 | 211.39 | 484.14 |
| 7d_25C | Seven days - 25 degrees Celsius | 339.03 | 205.86 | 472.20 |
| 10d_25C | Ten days - 25 degrees Celsius | 438.62 | 268.98 | 608.25 |
| 7d_15C | Seven days - 15 degrees Celsius | 413.89 | 251.67 | 576.11 |
| 7d_30C | Seven days - 30 degrees Celsius | 308.79 | 187.14 | 430.44 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.887427 | no |
| 3d_25C | 7d_25C | 0.951591 | no |
| 3d_25C | 7d_15C | 0.373531 | no |
| 3d_25C | 7d_30C | 0.812202 | no |
| 3d_25C | 10d_25C | 0.219311 | no |
| 5d_25C | 7d_25C | 0.938696 | no |
| 5d_25C | 7d_15C | 0.507758 | no |
| 5d_25C | 7d_30C | 0.678412 | no |
| 5d_25C | 10d_25C | 0.327083 | no |
| 7d_25C | 7d_15C | 0.431152 | no |
| 7d_25C | 7d_30C | 0.754803 | no |
| 7d_25C | 10d_25C | 0.260297 | no |
| 7d_15C | 7d_30C | 0.201071 | no |
| 7d_15C | 10d_25C | 0.849695 | no |
| 7d_30C | 10d_25C | 0.099307 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1561.t1 MFSRAVASAFRPVSRPTFLRPVRSAIRFPSGPAIPSVLHARLLSNETRTAIDKAVSSAPVVLFMKGTPETPQCGF SRATIQILGLQGVDPKKFVAFNVLEDAELRSGVKEYSEWPTIPQLYVEKEFIGGCDILMSMHQNGELAKLLETKG VLVAADE* |
| Coding | >Pro_DTO377G3_2|g1561.t1 ATGTTTTCCAGAGCAGTTGCATCGGCTTTCCGCCCGGTCTCGCGGCCAACCTTTTTGCGGCCCGTCCGCTCCGCC ATCCGATTCCCCTCGGGCCCTGCCATTCCCTCCGTCCTCCATGCACGCCTTCTGTCCAACGAGACCCGGACGGCG ATCGATAAGGCGGTCTCTTCCGCCCCCGTCGTGCTGTTTATGAAGGGTACACCCGAGACTCCGCAGTGTGGTTTC TCCCGCGCCACCATTCAAATCCTGGGTCTGCAGGGTGTTGATCCTAAGAAGTTTGTTGCTTTCAACGTGCTGGAG GATGCAGAGCTGCGCTCAGGTGTCAAGGAATACTCTGAGTGGCCCACTATTCCCCAGCTATACGTCGAGAAGGAG TTCATCGGTGGATGTGATATCCTAATGTCCATGCACCAAAATGGTGAGCTTGCTAAACTTTTGGAGACCAAGGGC GTTCTGGTTGCGGCGGATGAATAA |
| Transcript | >Pro_DTO377G3_2|g1561.t1 ATGTTTTCCAGAGCAGTTGCATCGGCTTTCCGCCCGGTCTCGCGGCCAACCTTTTTGCGGCCCGTCCGCTCCGCC ATCCGATTCCCCTCGGGCCCTGCCATTCCCTCCGTCCTCCATGCACGCCTTCTGTCCAACGAGACCCGGACGGCG ATCGATAAGGCGGTCTCTTCCGCCCCCGTCGTGCTGTTTATGAAGGGTACACCCGAGACTCCGCAGTGTGGTTTC TCCCGCGCCACCATTCAAATCCTGGGTCTGCAGGGTGTTGATCCTAAGAAGTTTGTTGCTTTCAACGTGCTGGAG GATGCAGAGCTGCGCTCAGGTGTCAAGGAATACTCTGAGTGGCCCACTATTCCCCAGCTATACGTCGAGAAGGAG TTCATCGGTGGATGTGATATCCTAATGTCCATGCACCAAAATGGTGAGCTTGCTAAACTTTTGGAGACCAAGGGC GTTCTGGTTGCGGCGGATGAATAA |
| Gene | >Pro_DTO377G3_2|g1561.t1 ATGTTTTCCAGAGCAGTTGCATCGGTATGAACTGTTCTTTATTCTCGACATCCGCCATTCGCATCCCCCAGCTAA CATGAATCTCGCAGGCTTTCCGCCCGGTCTCGCGGCCAACCTTTTTGCGGCCCGTCCGCTCCGCCATCCGATTCC CCTCGGGCCCTGCCATTCCCTCCGTCCTCCATGCACGCCTTCTGTCCAACGAGACCCGGACGGCGATCGATAAGG CGGTCTCTTCCGCCCCCGTCGTGCTGTTTATGAAGGGTACACCCGAGACTCCGCAGTGTGGTTTCTCCCGCGCCA CCATTCAAATCCTGGGTCTGCAGGGTGTTGATCCTAAGAAGTTTGTTGCTTTCAACGTGCTGGAGGATGCAGAGC TGCGCTCAGGTGTGTTGGGATTACCCCGAACTTCCTGCCGGCTATAGATTGCTAATCGTGCTGCATTTACAGGTG TCAAGGAATACTCTGAGTGGCCCACTATTCCCCAGCTATACGTCGAGAAGGAGTTCATCGGTGGATGTGATATCC TAATGTCCATGCACCAAAATGGTGAGCTTGCTAAACTTTTGGAGACCAAGGGCGTTCTGGTTGCGGCGGATGAAT AA |