Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g1534.t1
Gene name
Locationscaffold_02:222826..223202
Strand+
Gene length (bp)376
Transcript length (bp)315
Coding sequence length (bp)315
Protein length (aa) 105

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF13551 HTH_29 Winged helix-turn helix 5.1E-08 25 80
PF13384 HTH_23 Homeodomain-like domain 1.3E-06 19 60

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
Helix-turn-helix
Homeodomain-like HTH

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g1534.t1
MALTKDILGLGRTKSGELSVAQRSAIIYAHQAGATQSKLVLDFRCSRRTIYNTLKRFKEHNTVKSLPRTGRPRIF
SDRTRHLLFILARRHPFWSYKTLSCAIPG*
Coding >Pro_DTO377G3_2|g1534.t1
ATGGCATTAACCAAGGATATCCTTGGTTTAGGTCGTACAAAATCAGGTGAGCTATCTGTTGCTCAGCGCTCAGCT
ATTATTTATGCCCACCAGGCCGGTGCCACCCAGTCAAAGCTAGTACTCGATTTTAGGTGCTCCCGCCGAACGATT
TACAATACTTTGAAACGGTTCAAAGAACACAATACTGTTAAATCTCTCCCTCGAACCGGTCGCCCAAGGATCTTT
AGTGATCGAACTCGCCATTTACTTTTTATACTCGCCCGCCGGCACCCCTTTTGGTCCTATAAAACGCTGAGTTGT
GCTATACCTGGATAA
Transcript >Pro_DTO377G3_2|g1534.t1
ATGGCATTAACCAAGGATATCCTTGGTTTAGGTCGTACAAAATCAGGTGAGCTATCTGTTGCTCAGCGCTCAGCT
ATTATTTATGCCCACCAGGCCGGTGCCACCCAGTCAAAGCTAGTACTCGATTTTAGGTGCTCCCGCCGAACGATT
TACAATACTTTGAAACGGTTCAAAGAACACAATACTGTTAAATCTCTCCCTCGAACCGGTCGCCCAAGGATCTTT
AGTGATCGAACTCGCCATTTACTTTTTATACTCGCCCGCCGGCACCCCTTTTGGTCCTATAAAACGCTGAGTTGT
GCTATACCTGGATAA
Gene >Pro_DTO377G3_2|g1534.t1
ATGGCATTAACCAAGGATATCCTTGGTTTAGGTCGTACAAAATCAGGTGAGCTATCTGTTGCTCAGCGCTCAGCT
ATTATTTATGCCCACCAGGCCGGTGCCACCCAGTCAAAGCTAGTACTCGATTTTAGGTGCTCCCGCCGAACGATT
TACAATACTTTGAAACGGTTCAAAGAACACAATACTGTTAAATCTCTCCCTCGAACCGGTCGCCCAAGGATCTTT
AGTGATCGAACTCGCCATTTACTTTTTATACTCGCCCGCCGGCACCCCTTTTGGTCCTATAAAACGCTGAGTTGT
GCTATACCTGGTCATCTATCCCGCTCTACTATTATTAACGTTTTAAGGCTAACCAGTCTTCTAAAATATAGGATA
A

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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