Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g1534.t1
Gene name
Locationscaffold_02:222826..223202
Strand+
Gene length (bp)376
Transcript length (bp)315
Coding sequence length (bp)315
Protein length (aa) 105

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF13551 HTH_29 Winged helix-turn helix 4.7E-08 25 80
PF13384 HTH_23 Homeodomain-like domain 3.9E-06 19 60

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
Helix-turn-helix
Homeodomain-like HTH

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g1534.t1
MALTKDILGLGRTKSGELSVAQRSAIIYAHQAGATQSKLVLDFRCSRRTIYNTLKRFKEHNTVKSLPRTGRPRIF
SDRTRHLLFILARRHPFWSYKTLSCAIPG*
Coding >Pro_DTO377G3_2|g1534.t1
ATGGCATTAACCAAGGATATCCTTGGTTTAGGTCGTACAAAATCAGGTGAGCTATCTGTTGCTCAGCGCTCAGCT
ATTATTTATGCCCACCAGGCCGGTGCCACCCAGTCAAAGCTAGTACTCGATTTTAGGTGCTCCCGCCGAACGATT
TACAATACTTTGAAACGGTTCAAAGAACACAATACTGTTAAATCTCTCCCTCGAACCGGTCGCCCAAGGATCTTT
AGTGATCGAACTCGCCATTTACTTTTTATACTCGCCCGCCGGCACCCCTTTTGGTCCTATAAAACGCTGAGTTGT
GCTATACCTGGATAA
Transcript >Pro_DTO377G3_2|g1534.t1
ATGGCATTAACCAAGGATATCCTTGGTTTAGGTCGTACAAAATCAGGTGAGCTATCTGTTGCTCAGCGCTCAGCT
ATTATTTATGCCCACCAGGCCGGTGCCACCCAGTCAAAGCTAGTACTCGATTTTAGGTGCTCCCGCCGAACGATT
TACAATACTTTGAAACGGTTCAAAGAACACAATACTGTTAAATCTCTCCCTCGAACCGGTCGCCCAAGGATCTTT
AGTGATCGAACTCGCCATTTACTTTTTATACTCGCCCGCCGGCACCCCTTTTGGTCCTATAAAACGCTGAGTTGT
GCTATACCTGGATAA
Gene >Pro_DTO377G3_2|g1534.t1
ATGGCATTAACCAAGGATATCCTTGGTTTAGGTCGTACAAAATCAGGTGAGCTATCTGTTGCTCAGCGCTCAGCT
ATTATTTATGCCCACCAGGCCGGTGCCACCCAGTCAAAGCTAGTACTCGATTTTAGGTGCTCCCGCCGAACGATT
TACAATACTTTGAAACGGTTCAAAGAACACAATACTGTTAAATCTCTCCCTCGAACCGGTCGCCCAAGGATCTTT
AGTGATCGAACTCGCCATTTACTTTTTATACTCGCCCGCCGGCACCCCTTTTGGTCCTATAAAACGCTGAGTTGT
GCTATACCTGGTCATCTATCCCGCTCTACTATTATTAACGTTTTAAGGCTAACCAGTCTTCTAAAATATAGGATA
A

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail