© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1526.t1 |
| Gene name | |
| Location | scaffold_02:204064..206290 |
| Strand | + |
| Gene length (bp) | 2226 |
| Transcript length (bp) | 2226 |
| Coding sequence length (bp) | 2226 |
| Protein length (aa) | 742 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.6E-19 | 38 | 107 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.9E-13 | 151 | 219 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 5.6E-14 | 308 | 368 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 54 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 15.66 | 8.34 | 22.98 |
| 5d_25C | Five days - 25 degrees Celsius | 9.73 | 4.61 | 14.86 |
| 7d_25C | Seven days - 25 degrees Celsius | 10.38 | 4.98 | 15.78 |
| 10d_25C | Ten days - 25 degrees Celsius | 5.47 | 2.16 | 8.79 |
| 7d_15C | Seven days - 15 degrees Celsius | 8.59 | 3.95 | 13.23 |
| 7d_30C | Seven days - 30 degrees Celsius | 10.32 | 4.98 | 15.66 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.077004 | no |
| 3d_25C | 7d_25C | 0.136062 | no |
| 3d_25C | 7d_15C | 0.021921 | yes |
| 3d_25C | 7d_30C | 0.132161 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.882528 | no |
| 5d_25C | 7d_15C | 0.753411 | no |
| 5d_25C | 7d_30C | 0.894939 | no |
| 5d_25C | 10d_25C | 0.062630 | no |
| 7d_25C | 7d_15C | 0.606142 | no |
| 7d_25C | 7d_30C | 0.990895 | no |
| 7d_25C | 10d_25C | 0.035881 | yes |
| 7d_15C | 7d_30C | 0.619074 | no |
| 7d_15C | 10d_25C | 0.172130 | no |
| 7d_30C | 10d_25C | 0.036293 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1526.t1 MVELHKKRRLSDAESTEIKVEATTPAAEAASAQNKRTLFVRSLPTSATTESLAEYFSQSYIIKHAVVVCDKETKV SKGFGFVTFADVEDAESALKELNGSKFDGKIIRVDYAESRKREIDEKVGRSVPTAASRESKKQKEEERGQGLPPK LIVRNLPWSVKEPEDLNVLFRSFGKVKFATLPKRNGKLAGFGFVTMRGRKNAEKALQMINGKEIDGRQLAVDWAV EKDVWETTKKEEDDDEEEELKEEKESDDVEMKDAEGILEEPSDDETSSDEDDEDEEDNDLDELDDLDDDDEADEE DDRNATTVFIRNLPFTATDQALYDHFKTQFGPLRYARVVLDYETERPRGTGFVCFWKPEDANTCVREAPRGAEAM APNKDKPKSNTAMKHSVLQDENSDPSGRYTLEGRVLQVARAVSKGQAAKLEEEGVSRRMVRDTDKRRLYLLNEGT IPSNSPLYKKLSPSEIKMREDSYKQRETFIKKNPALHLSLTRLAIRNLPRHINSKDLKQLARESVVEFAKDVKAG ARQPLSKEEQQRSRDTMKELEQLRKQKKMGIVRQAKVVFETREGTKVSEKTGGGRSRGYGFIEFFTHRHALMSLR WLNCHSMAVPPSAQAPDDRDKKKSLVVEFAIENAQVVKRRNELQAKSREPRPKRSDDAEDGERGQKRKRSDTRGG KGKDGRDARGGRDGRDGRDAKRGKTGNGNAKGPKDEKVTNEEEDKAAKRNRIIGQKRMKRKSRKGN* |
| Coding | >Pro_DTO377G3_2|g1526.t1 ATGGTTGAATTACACAAGAAACGACGTCTCTCGGACGCCGAAAGCACCGAAATCAAAGTCGAAGCCACTACACCC GCCGCCGAGGCCGCGTCCGCACAGAACAAGAGAACTCTTTTCGTCCGCTCACTACCCACCTCAGCCACGACAGAA AGCCTCGCAGAATATTTCTCGCAATCCTACATTATCAAACACGCTGTTGTTGTCTGCGACAAAGAGACAAAGGTA TCTAAGGGATTCGGTTTTGTTACATTCGCCGATGTCGAGGATGCGGAGAGTGCTCTGAAAGAACTCAATGGGTCC AAGTTTGACGGGAAAATCATTCGCGTCGACTATGCCGAGTCTCGTAAGCGTGAGATCGATGAGAAGGTTGGACGC AGTGTCCCCACTGCTGCATCCCGCGAATCCAAGAAGCAGAAGGAAGAAGAGAGAGGGCAGGGTCTGCCACCCAAG CTGATTGTTCGCAATCTGCCGTGGAGTGTCAAGGAGCCCGAGGATCTGAATGTCCTGTTCCGCAGCTTTGGAAAA GTCAAGTTTGCTACTCTCCCCAAGAGGAATGGCAAACTTGCTGGTTTTGGTTTCGTTACCATGCGTGGCAGGAAA AACGCCGAGAAGGCGCTCCAGATGATCAACGGAAAGGAGATCGATGGACGCCAACTTGCTGTCGATTGGGCTGTT GAGAAGGACGTTTGGGAAACTACCAAGAAGGAAGAAGACGACGACGAGGAGGAGGAGCTGAAGGAAGAGAAGGAG TCTGATGATGTTGAGATGAAAGATGCCGAGGGTATTCTGGAAGAGCCCTCAGACGACGAAACCTCTTCCGACGAA GATGACGAAGACGAAGAGGACAATGACCTGGATGAGCTGGACGACTTGGACGATGATGATGAGGCAGACGAGGAG GATGACCGAAATGCCACTACAGTCTTCATTCGCAACCTCCCCTTCACCGCTACAGATCAGGCCCTCTACGACCAC TTCAAAACTCAGTTTGGCCCGCTACGATATGCACGTGTGGTCTTGGATTACGAGACCGAGCGCCCTCGAGGCACT GGATTTGTCTGCTTCTGGAAGCCGGAGGACGCCAACACATGCGTTCGTGAAGCCCCCCGGGGAGCCGAAGCTATG GCCCCGAACAAGGACAAGCCTAAGTCAAACACCGCTATGAAGCACTCCGTCCTCCAAGATGAAAACTCCGACCCA AGCGGCCGCTACACCCTAGAAGGCCGCGTCCTACAAGTCGCGCGGGCCGTGAGCAAGGGTCAAGCCGCCAAGCTG GAAGAAGAGGGAGTATCACGCCGTATGGTCCGCGACACAGACAAGCGCCGCCTATACCTCCTCAACGAGGGTACG ATCCCCTCCAACTCCCCGCTGTATAAGAAGCTCTCTCCCTCCGAAATCAAGATGCGCGAGGACAGCTACAAGCAG CGCGAGACCTTCATCAAGAAGAACCCCGCTCTCCACCTCAGTCTCACCCGTCTCGCCATCCGTAACCTCCCCCGC CACATCAACTCCAAGGACCTGAAGCAGCTTGCTCGAGAGTCCGTCGTCGAATTCGCCAAGGATGTCAAGGCGGGC GCACGTCAACCGCTCTCAAAAGAGGAGCAGCAGCGATCCCGCGATACAATGAAGGAGCTAGAGCAGCTGCGCAAA CAAAAGAAGATGGGTATCGTGCGCCAAGCCAAGGTCGTCTTCGAGACTCGCGAGGGTACCAAGGTCTCCGAGAAG ACCGGTGGTGGTCGCAGTCGTGGCTACGGATTCATCGAGTTCTTCACTCACCGTCATGCGCTCATGAGTTTGCGC TGGCTGAACTGCCACTCCATGGCAGTCCCTCCTTCTGCTCAAGCTCCCGATGACCGGGACAAGAAGAAGAGCCTT GTTGTTGAGTTTGCTATTGAGAATGCCCAGGTCGTTAAGCGCCGTAATGAGCTGCAAGCTAAATCCCGCGAGCCC AGGCCCAAGCGCTCGGATGATGCCGAGGACGGAGAGAGAGGTCAGAAGAGGAAGCGCTCCGATACTCGTGGTGGA AAAGGAAAGGATGGAAGGGATGCACGAGGTGGCCGAGATGGCCGAGATGGTCGTGATGCCAAGCGCGGCAAGACT GGAAATGGAAATGCAAAGGGCCCCAAAGATGAAAAAGTGACGAATGAAGAGGAGGACAAGGCCGCTAAGCGCAAC CGCATTATCGGGCAGAAGCGCATGAAGCGGAAGTCCCGCAAGGGGAATTAA |
| Transcript | >Pro_DTO377G3_2|g1526.t1 ATGGTTGAATTACACAAGAAACGACGTCTCTCGGACGCCGAAAGCACCGAAATCAAAGTCGAAGCCACTACACCC GCCGCCGAGGCCGCGTCCGCACAGAACAAGAGAACTCTTTTCGTCCGCTCACTACCCACCTCAGCCACGACAGAA AGCCTCGCAGAATATTTCTCGCAATCCTACATTATCAAACACGCTGTTGTTGTCTGCGACAAAGAGACAAAGGTA TCTAAGGGATTCGGTTTTGTTACATTCGCCGATGTCGAGGATGCGGAGAGTGCTCTGAAAGAACTCAATGGGTCC AAGTTTGACGGGAAAATCATTCGCGTCGACTATGCCGAGTCTCGTAAGCGTGAGATCGATGAGAAGGTTGGACGC AGTGTCCCCACTGCTGCATCCCGCGAATCCAAGAAGCAGAAGGAAGAAGAGAGAGGGCAGGGTCTGCCACCCAAG CTGATTGTTCGCAATCTGCCGTGGAGTGTCAAGGAGCCCGAGGATCTGAATGTCCTGTTCCGCAGCTTTGGAAAA GTCAAGTTTGCTACTCTCCCCAAGAGGAATGGCAAACTTGCTGGTTTTGGTTTCGTTACCATGCGTGGCAGGAAA AACGCCGAGAAGGCGCTCCAGATGATCAACGGAAAGGAGATCGATGGACGCCAACTTGCTGTCGATTGGGCTGTT GAGAAGGACGTTTGGGAAACTACCAAGAAGGAAGAAGACGACGACGAGGAGGAGGAGCTGAAGGAAGAGAAGGAG TCTGATGATGTTGAGATGAAAGATGCCGAGGGTATTCTGGAAGAGCCCTCAGACGACGAAACCTCTTCCGACGAA GATGACGAAGACGAAGAGGACAATGACCTGGATGAGCTGGACGACTTGGACGATGATGATGAGGCAGACGAGGAG GATGACCGAAATGCCACTACAGTCTTCATTCGCAACCTCCCCTTCACCGCTACAGATCAGGCCCTCTACGACCAC TTCAAAACTCAGTTTGGCCCGCTACGATATGCACGTGTGGTCTTGGATTACGAGACCGAGCGCCCTCGAGGCACT GGATTTGTCTGCTTCTGGAAGCCGGAGGACGCCAACACATGCGTTCGTGAAGCCCCCCGGGGAGCCGAAGCTATG GCCCCGAACAAGGACAAGCCTAAGTCAAACACCGCTATGAAGCACTCCGTCCTCCAAGATGAAAACTCCGACCCA AGCGGCCGCTACACCCTAGAAGGCCGCGTCCTACAAGTCGCGCGGGCCGTGAGCAAGGGTCAAGCCGCCAAGCTG GAAGAAGAGGGAGTATCACGCCGTATGGTCCGCGACACAGACAAGCGCCGCCTATACCTCCTCAACGAGGGTACG ATCCCCTCCAACTCCCCGCTGTATAAGAAGCTCTCTCCCTCCGAAATCAAGATGCGCGAGGACAGCTACAAGCAG CGCGAGACCTTCATCAAGAAGAACCCCGCTCTCCACCTCAGTCTCACCCGTCTCGCCATCCGTAACCTCCCCCGC CACATCAACTCCAAGGACCTGAAGCAGCTTGCTCGAGAGTCCGTCGTCGAATTCGCCAAGGATGTCAAGGCGGGC GCACGTCAACCGCTCTCAAAAGAGGAGCAGCAGCGATCCCGCGATACAATGAAGGAGCTAGAGCAGCTGCGCAAA CAAAAGAAGATGGGTATCGTGCGCCAAGCCAAGGTCGTCTTCGAGACTCGCGAGGGTACCAAGGTCTCCGAGAAG ACCGGTGGTGGTCGCAGTCGTGGCTACGGATTCATCGAGTTCTTCACTCACCGTCATGCGCTCATGAGTTTGCGC TGGCTGAACTGCCACTCCATGGCAGTCCCTCCTTCTGCTCAAGCTCCCGATGACCGGGACAAGAAGAAGAGCCTT GTTGTTGAGTTTGCTATTGAGAATGCCCAGGTCGTTAAGCGCCGTAATGAGCTGCAAGCTAAATCCCGCGAGCCC AGGCCCAAGCGCTCGGATGATGCCGAGGACGGAGAGAGAGGTCAGAAGAGGAAGCGCTCCGATACTCGTGGTGGA AAAGGAAAGGATGGAAGGGATGCACGAGGTGGCCGAGATGGCCGAGATGGTCGTGATGCCAAGCGCGGCAAGACT GGAAATGGAAATGCAAAGGGCCCCAAAGATGAAAAAGTGACGAATGAAGAGGAGGACAAGGCCGCTAAGCGCAAC CGCATTATCGGGCAGAAGCGCATGAAGCGGAAGTCCCGCAAGGGGAATTAA |
| Gene | >Pro_DTO377G3_2|g1526.t1 ATGGTTGAATTACACAAGAAACGACGTCTCTCGGACGCCGAAAGCACCGAAATCAAAGTCGAAGCCACTACACCC GCCGCCGAGGCCGCGTCCGCACAGAACAAGAGAACTCTTTTCGTCCGCTCACTACCCACCTCAGCCACGACAGAA AGCCTCGCAGAATATTTCTCGCAATCCTACATTATCAAACACGCTGTTGTTGTCTGCGACAAAGAGACAAAGGTA TCTAAGGGATTCGGTTTTGTTACATTCGCCGATGTCGAGGATGCGGAGAGTGCTCTGAAAGAACTCAATGGGTCC AAGTTTGACGGGAAAATCATTCGCGTCGACTATGCCGAGTCTCGTAAGCGTGAGATCGATGAGAAGGTTGGACGC AGTGTCCCCACTGCTGCATCCCGCGAATCCAAGAAGCAGAAGGAAGAAGAGAGAGGGCAGGGTCTGCCACCCAAG CTGATTGTTCGCAATCTGCCGTGGAGTGTCAAGGAGCCCGAGGATCTGAATGTCCTGTTCCGCAGCTTTGGAAAA GTCAAGTTTGCTACTCTCCCCAAGAGGAATGGCAAACTTGCTGGTTTTGGTTTCGTTACCATGCGTGGCAGGAAA AACGCCGAGAAGGCGCTCCAGATGATCAACGGAAAGGAGATCGATGGACGCCAACTTGCTGTCGATTGGGCTGTT GAGAAGGACGTTTGGGAAACTACCAAGAAGGAAGAAGACGACGACGAGGAGGAGGAGCTGAAGGAAGAGAAGGAG TCTGATGATGTTGAGATGAAAGATGCCGAGGGTATTCTGGAAGAGCCCTCAGACGACGAAACCTCTTCCGACGAA GATGACGAAGACGAAGAGGACAATGACCTGGATGAGCTGGACGACTTGGACGATGATGATGAGGCAGACGAGGAG GATGACCGAAATGCCACTACAGTCTTCATTCGCAACCTCCCCTTCACCGCTACAGATCAGGCCCTCTACGACCAC TTCAAAACTCAGTTTGGCCCGCTACGATATGCACGTGTGGTCTTGGATTACGAGACCGAGCGCCCTCGAGGCACT GGATTTGTCTGCTTCTGGAAGCCGGAGGACGCCAACACATGCGTTCGTGAAGCCCCCCGGGGAGCCGAAGCTATG GCCCCGAACAAGGACAAGCCTAAGTCAAACACCGCTATGAAGCACTCCGTCCTCCAAGATGAAAACTCCGACCCA AGCGGCCGCTACACCCTAGAAGGCCGCGTCCTACAAGTCGCGCGGGCCGTGAGCAAGGGTCAAGCCGCCAAGCTG GAAGAAGAGGGAGTATCACGCCGTATGGTCCGCGACACAGACAAGCGCCGCCTATACCTCCTCAACGAGGGTACG ATCCCCTCCAACTCCCCGCTGTATAAGAAGCTCTCTCCCTCCGAAATCAAGATGCGCGAGGACAGCTACAAGCAG CGCGAGACCTTCATCAAGAAGAACCCCGCTCTCCACCTCAGTCTCACCCGTCTCGCCATCCGTAACCTCCCCCGC CACATCAACTCCAAGGACCTGAAGCAGCTTGCTCGAGAGTCCGTCGTCGAATTCGCCAAGGATGTCAAGGCGGGC GCACGTCAACCGCTCTCAAAAGAGGAGCAGCAGCGATCCCGCGATACAATGAAGGAGCTAGAGCAGCTGCGCAAA CAAAAGAAGATGGGTATCGTGCGCCAAGCCAAGGTCGTCTTCGAGACTCGCGAGGGTACCAAGGTCTCCGAGAAG ACCGGTGGTGGTCGCAGTCGTGGCTACGGATTCATCGAGTTCTTCACTCACCGTCATGCGCTCATGAGTTTGCGC TGGCTGAACTGCCACTCCATGGCAGTCCCTCCTTCTGCTCAAGCTCCCGATGACCGGGACAAGAAGAAGAGCCTT GTTGTTGAGTTTGCTATTGAGAATGCCCAGGTCGTTAAGCGCCGTAATGAGCTGCAAGCTAAATCCCGCGAGCCC AGGCCCAAGCGCTCGGATGATGCCGAGGACGGAGAGAGAGGTCAGAAGAGGAAGCGCTCCGATACTCGTGGTGGA AAAGGAAAGGATGGAAGGGATGCACGAGGTGGCCGAGATGGCCGAGATGGTCGTGATGCCAAGCGCGGCAAGACT GGAAATGGAAATGCAAAGGGCCCCAAAGATGAAAAAGTGACGAATGAAGAGGAGGACAAGGCCGCTAAGCGCAAC CGCATTATCGGGCAGAAGCGCATGAAGCGGAAGTCCCGCAAGGGGAATTAA |