Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g1526.t1
Gene name
Locationscaffold_02:204064..206290
Strand+
Gene length (bp)2226
Transcript length (bp)2226
Coding sequence length (bp)2226
Protein length (aa) 742

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.6E-19 38 107
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.9E-13 151 219
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.6E-14 308 368

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 54 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 15.66 8.34 22.98
5d_25C Five days - 25 degrees Celsius 9.73 4.61 14.86
7d_25C Seven days - 25 degrees Celsius 10.38 4.98 15.78
10d_25C Ten days - 25 degrees Celsius 5.47 2.16 8.79
7d_15C Seven days - 15 degrees Celsius 8.59 3.95 13.23
7d_30C Seven days - 30 degrees Celsius 10.32 4.98 15.66

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.077004 no
3d_25C 7d_25C 0.136062 no
3d_25C 7d_15C 0.021921 yes
3d_25C 7d_30C 0.132161 no
3d_25C 10d_25C 0.000700 yes
5d_25C 7d_25C 0.882528 no
5d_25C 7d_15C 0.753411 no
5d_25C 7d_30C 0.894939 no
5d_25C 10d_25C 0.062630 no
7d_25C 7d_15C 0.606142 no
7d_25C 7d_30C 0.990895 no
7d_25C 10d_25C 0.035881 yes
7d_15C 7d_30C 0.619074 no
7d_15C 10d_25C 0.172130 no
7d_30C 10d_25C 0.036293 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g1526.t1
MVELHKKRRLSDAESTEIKVEATTPAAEAASAQNKRTLFVRSLPTSATTESLAEYFSQSYIIKHAVVVCDKETKV
SKGFGFVTFADVEDAESALKELNGSKFDGKIIRVDYAESRKREIDEKVGRSVPTAASRESKKQKEEERGQGLPPK
LIVRNLPWSVKEPEDLNVLFRSFGKVKFATLPKRNGKLAGFGFVTMRGRKNAEKALQMINGKEIDGRQLAVDWAV
EKDVWETTKKEEDDDEEEELKEEKESDDVEMKDAEGILEEPSDDETSSDEDDEDEEDNDLDELDDLDDDDEADEE
DDRNATTVFIRNLPFTATDQALYDHFKTQFGPLRYARVVLDYETERPRGTGFVCFWKPEDANTCVREAPRGAEAM
APNKDKPKSNTAMKHSVLQDENSDPSGRYTLEGRVLQVARAVSKGQAAKLEEEGVSRRMVRDTDKRRLYLLNEGT
IPSNSPLYKKLSPSEIKMREDSYKQRETFIKKNPALHLSLTRLAIRNLPRHINSKDLKQLARESVVEFAKDVKAG
ARQPLSKEEQQRSRDTMKELEQLRKQKKMGIVRQAKVVFETREGTKVSEKTGGGRSRGYGFIEFFTHRHALMSLR
WLNCHSMAVPPSAQAPDDRDKKKSLVVEFAIENAQVVKRRNELQAKSREPRPKRSDDAEDGERGQKRKRSDTRGG
KGKDGRDARGGRDGRDGRDAKRGKTGNGNAKGPKDEKVTNEEEDKAAKRNRIIGQKRMKRKSRKGN*
Coding >Pro_DTO377G3_2|g1526.t1
ATGGTTGAATTACACAAGAAACGACGTCTCTCGGACGCCGAAAGCACCGAAATCAAAGTCGAAGCCACTACACCC
GCCGCCGAGGCCGCGTCCGCACAGAACAAGAGAACTCTTTTCGTCCGCTCACTACCCACCTCAGCCACGACAGAA
AGCCTCGCAGAATATTTCTCGCAATCCTACATTATCAAACACGCTGTTGTTGTCTGCGACAAAGAGACAAAGGTA
TCTAAGGGATTCGGTTTTGTTACATTCGCCGATGTCGAGGATGCGGAGAGTGCTCTGAAAGAACTCAATGGGTCC
AAGTTTGACGGGAAAATCATTCGCGTCGACTATGCCGAGTCTCGTAAGCGTGAGATCGATGAGAAGGTTGGACGC
AGTGTCCCCACTGCTGCATCCCGCGAATCCAAGAAGCAGAAGGAAGAAGAGAGAGGGCAGGGTCTGCCACCCAAG
CTGATTGTTCGCAATCTGCCGTGGAGTGTCAAGGAGCCCGAGGATCTGAATGTCCTGTTCCGCAGCTTTGGAAAA
GTCAAGTTTGCTACTCTCCCCAAGAGGAATGGCAAACTTGCTGGTTTTGGTTTCGTTACCATGCGTGGCAGGAAA
AACGCCGAGAAGGCGCTCCAGATGATCAACGGAAAGGAGATCGATGGACGCCAACTTGCTGTCGATTGGGCTGTT
GAGAAGGACGTTTGGGAAACTACCAAGAAGGAAGAAGACGACGACGAGGAGGAGGAGCTGAAGGAAGAGAAGGAG
TCTGATGATGTTGAGATGAAAGATGCCGAGGGTATTCTGGAAGAGCCCTCAGACGACGAAACCTCTTCCGACGAA
GATGACGAAGACGAAGAGGACAATGACCTGGATGAGCTGGACGACTTGGACGATGATGATGAGGCAGACGAGGAG
GATGACCGAAATGCCACTACAGTCTTCATTCGCAACCTCCCCTTCACCGCTACAGATCAGGCCCTCTACGACCAC
TTCAAAACTCAGTTTGGCCCGCTACGATATGCACGTGTGGTCTTGGATTACGAGACCGAGCGCCCTCGAGGCACT
GGATTTGTCTGCTTCTGGAAGCCGGAGGACGCCAACACATGCGTTCGTGAAGCCCCCCGGGGAGCCGAAGCTATG
GCCCCGAACAAGGACAAGCCTAAGTCAAACACCGCTATGAAGCACTCCGTCCTCCAAGATGAAAACTCCGACCCA
AGCGGCCGCTACACCCTAGAAGGCCGCGTCCTACAAGTCGCGCGGGCCGTGAGCAAGGGTCAAGCCGCCAAGCTG
GAAGAAGAGGGAGTATCACGCCGTATGGTCCGCGACACAGACAAGCGCCGCCTATACCTCCTCAACGAGGGTACG
ATCCCCTCCAACTCCCCGCTGTATAAGAAGCTCTCTCCCTCCGAAATCAAGATGCGCGAGGACAGCTACAAGCAG
CGCGAGACCTTCATCAAGAAGAACCCCGCTCTCCACCTCAGTCTCACCCGTCTCGCCATCCGTAACCTCCCCCGC
CACATCAACTCCAAGGACCTGAAGCAGCTTGCTCGAGAGTCCGTCGTCGAATTCGCCAAGGATGTCAAGGCGGGC
GCACGTCAACCGCTCTCAAAAGAGGAGCAGCAGCGATCCCGCGATACAATGAAGGAGCTAGAGCAGCTGCGCAAA
CAAAAGAAGATGGGTATCGTGCGCCAAGCCAAGGTCGTCTTCGAGACTCGCGAGGGTACCAAGGTCTCCGAGAAG
ACCGGTGGTGGTCGCAGTCGTGGCTACGGATTCATCGAGTTCTTCACTCACCGTCATGCGCTCATGAGTTTGCGC
TGGCTGAACTGCCACTCCATGGCAGTCCCTCCTTCTGCTCAAGCTCCCGATGACCGGGACAAGAAGAAGAGCCTT
GTTGTTGAGTTTGCTATTGAGAATGCCCAGGTCGTTAAGCGCCGTAATGAGCTGCAAGCTAAATCCCGCGAGCCC
AGGCCCAAGCGCTCGGATGATGCCGAGGACGGAGAGAGAGGTCAGAAGAGGAAGCGCTCCGATACTCGTGGTGGA
AAAGGAAAGGATGGAAGGGATGCACGAGGTGGCCGAGATGGCCGAGATGGTCGTGATGCCAAGCGCGGCAAGACT
GGAAATGGAAATGCAAAGGGCCCCAAAGATGAAAAAGTGACGAATGAAGAGGAGGACAAGGCCGCTAAGCGCAAC
CGCATTATCGGGCAGAAGCGCATGAAGCGGAAGTCCCGCAAGGGGAATTAA
Transcript >Pro_DTO377G3_2|g1526.t1
ATGGTTGAATTACACAAGAAACGACGTCTCTCGGACGCCGAAAGCACCGAAATCAAAGTCGAAGCCACTACACCC
GCCGCCGAGGCCGCGTCCGCACAGAACAAGAGAACTCTTTTCGTCCGCTCACTACCCACCTCAGCCACGACAGAA
AGCCTCGCAGAATATTTCTCGCAATCCTACATTATCAAACACGCTGTTGTTGTCTGCGACAAAGAGACAAAGGTA
TCTAAGGGATTCGGTTTTGTTACATTCGCCGATGTCGAGGATGCGGAGAGTGCTCTGAAAGAACTCAATGGGTCC
AAGTTTGACGGGAAAATCATTCGCGTCGACTATGCCGAGTCTCGTAAGCGTGAGATCGATGAGAAGGTTGGACGC
AGTGTCCCCACTGCTGCATCCCGCGAATCCAAGAAGCAGAAGGAAGAAGAGAGAGGGCAGGGTCTGCCACCCAAG
CTGATTGTTCGCAATCTGCCGTGGAGTGTCAAGGAGCCCGAGGATCTGAATGTCCTGTTCCGCAGCTTTGGAAAA
GTCAAGTTTGCTACTCTCCCCAAGAGGAATGGCAAACTTGCTGGTTTTGGTTTCGTTACCATGCGTGGCAGGAAA
AACGCCGAGAAGGCGCTCCAGATGATCAACGGAAAGGAGATCGATGGACGCCAACTTGCTGTCGATTGGGCTGTT
GAGAAGGACGTTTGGGAAACTACCAAGAAGGAAGAAGACGACGACGAGGAGGAGGAGCTGAAGGAAGAGAAGGAG
TCTGATGATGTTGAGATGAAAGATGCCGAGGGTATTCTGGAAGAGCCCTCAGACGACGAAACCTCTTCCGACGAA
GATGACGAAGACGAAGAGGACAATGACCTGGATGAGCTGGACGACTTGGACGATGATGATGAGGCAGACGAGGAG
GATGACCGAAATGCCACTACAGTCTTCATTCGCAACCTCCCCTTCACCGCTACAGATCAGGCCCTCTACGACCAC
TTCAAAACTCAGTTTGGCCCGCTACGATATGCACGTGTGGTCTTGGATTACGAGACCGAGCGCCCTCGAGGCACT
GGATTTGTCTGCTTCTGGAAGCCGGAGGACGCCAACACATGCGTTCGTGAAGCCCCCCGGGGAGCCGAAGCTATG
GCCCCGAACAAGGACAAGCCTAAGTCAAACACCGCTATGAAGCACTCCGTCCTCCAAGATGAAAACTCCGACCCA
AGCGGCCGCTACACCCTAGAAGGCCGCGTCCTACAAGTCGCGCGGGCCGTGAGCAAGGGTCAAGCCGCCAAGCTG
GAAGAAGAGGGAGTATCACGCCGTATGGTCCGCGACACAGACAAGCGCCGCCTATACCTCCTCAACGAGGGTACG
ATCCCCTCCAACTCCCCGCTGTATAAGAAGCTCTCTCCCTCCGAAATCAAGATGCGCGAGGACAGCTACAAGCAG
CGCGAGACCTTCATCAAGAAGAACCCCGCTCTCCACCTCAGTCTCACCCGTCTCGCCATCCGTAACCTCCCCCGC
CACATCAACTCCAAGGACCTGAAGCAGCTTGCTCGAGAGTCCGTCGTCGAATTCGCCAAGGATGTCAAGGCGGGC
GCACGTCAACCGCTCTCAAAAGAGGAGCAGCAGCGATCCCGCGATACAATGAAGGAGCTAGAGCAGCTGCGCAAA
CAAAAGAAGATGGGTATCGTGCGCCAAGCCAAGGTCGTCTTCGAGACTCGCGAGGGTACCAAGGTCTCCGAGAAG
ACCGGTGGTGGTCGCAGTCGTGGCTACGGATTCATCGAGTTCTTCACTCACCGTCATGCGCTCATGAGTTTGCGC
TGGCTGAACTGCCACTCCATGGCAGTCCCTCCTTCTGCTCAAGCTCCCGATGACCGGGACAAGAAGAAGAGCCTT
GTTGTTGAGTTTGCTATTGAGAATGCCCAGGTCGTTAAGCGCCGTAATGAGCTGCAAGCTAAATCCCGCGAGCCC
AGGCCCAAGCGCTCGGATGATGCCGAGGACGGAGAGAGAGGTCAGAAGAGGAAGCGCTCCGATACTCGTGGTGGA
AAAGGAAAGGATGGAAGGGATGCACGAGGTGGCCGAGATGGCCGAGATGGTCGTGATGCCAAGCGCGGCAAGACT
GGAAATGGAAATGCAAAGGGCCCCAAAGATGAAAAAGTGACGAATGAAGAGGAGGACAAGGCCGCTAAGCGCAAC
CGCATTATCGGGCAGAAGCGCATGAAGCGGAAGTCCCGCAAGGGGAATTAA
Gene >Pro_DTO377G3_2|g1526.t1
ATGGTTGAATTACACAAGAAACGACGTCTCTCGGACGCCGAAAGCACCGAAATCAAAGTCGAAGCCACTACACCC
GCCGCCGAGGCCGCGTCCGCACAGAACAAGAGAACTCTTTTCGTCCGCTCACTACCCACCTCAGCCACGACAGAA
AGCCTCGCAGAATATTTCTCGCAATCCTACATTATCAAACACGCTGTTGTTGTCTGCGACAAAGAGACAAAGGTA
TCTAAGGGATTCGGTTTTGTTACATTCGCCGATGTCGAGGATGCGGAGAGTGCTCTGAAAGAACTCAATGGGTCC
AAGTTTGACGGGAAAATCATTCGCGTCGACTATGCCGAGTCTCGTAAGCGTGAGATCGATGAGAAGGTTGGACGC
AGTGTCCCCACTGCTGCATCCCGCGAATCCAAGAAGCAGAAGGAAGAAGAGAGAGGGCAGGGTCTGCCACCCAAG
CTGATTGTTCGCAATCTGCCGTGGAGTGTCAAGGAGCCCGAGGATCTGAATGTCCTGTTCCGCAGCTTTGGAAAA
GTCAAGTTTGCTACTCTCCCCAAGAGGAATGGCAAACTTGCTGGTTTTGGTTTCGTTACCATGCGTGGCAGGAAA
AACGCCGAGAAGGCGCTCCAGATGATCAACGGAAAGGAGATCGATGGACGCCAACTTGCTGTCGATTGGGCTGTT
GAGAAGGACGTTTGGGAAACTACCAAGAAGGAAGAAGACGACGACGAGGAGGAGGAGCTGAAGGAAGAGAAGGAG
TCTGATGATGTTGAGATGAAAGATGCCGAGGGTATTCTGGAAGAGCCCTCAGACGACGAAACCTCTTCCGACGAA
GATGACGAAGACGAAGAGGACAATGACCTGGATGAGCTGGACGACTTGGACGATGATGATGAGGCAGACGAGGAG
GATGACCGAAATGCCACTACAGTCTTCATTCGCAACCTCCCCTTCACCGCTACAGATCAGGCCCTCTACGACCAC
TTCAAAACTCAGTTTGGCCCGCTACGATATGCACGTGTGGTCTTGGATTACGAGACCGAGCGCCCTCGAGGCACT
GGATTTGTCTGCTTCTGGAAGCCGGAGGACGCCAACACATGCGTTCGTGAAGCCCCCCGGGGAGCCGAAGCTATG
GCCCCGAACAAGGACAAGCCTAAGTCAAACACCGCTATGAAGCACTCCGTCCTCCAAGATGAAAACTCCGACCCA
AGCGGCCGCTACACCCTAGAAGGCCGCGTCCTACAAGTCGCGCGGGCCGTGAGCAAGGGTCAAGCCGCCAAGCTG
GAAGAAGAGGGAGTATCACGCCGTATGGTCCGCGACACAGACAAGCGCCGCCTATACCTCCTCAACGAGGGTACG
ATCCCCTCCAACTCCCCGCTGTATAAGAAGCTCTCTCCCTCCGAAATCAAGATGCGCGAGGACAGCTACAAGCAG
CGCGAGACCTTCATCAAGAAGAACCCCGCTCTCCACCTCAGTCTCACCCGTCTCGCCATCCGTAACCTCCCCCGC
CACATCAACTCCAAGGACCTGAAGCAGCTTGCTCGAGAGTCCGTCGTCGAATTCGCCAAGGATGTCAAGGCGGGC
GCACGTCAACCGCTCTCAAAAGAGGAGCAGCAGCGATCCCGCGATACAATGAAGGAGCTAGAGCAGCTGCGCAAA
CAAAAGAAGATGGGTATCGTGCGCCAAGCCAAGGTCGTCTTCGAGACTCGCGAGGGTACCAAGGTCTCCGAGAAG
ACCGGTGGTGGTCGCAGTCGTGGCTACGGATTCATCGAGTTCTTCACTCACCGTCATGCGCTCATGAGTTTGCGC
TGGCTGAACTGCCACTCCATGGCAGTCCCTCCTTCTGCTCAAGCTCCCGATGACCGGGACAAGAAGAAGAGCCTT
GTTGTTGAGTTTGCTATTGAGAATGCCCAGGTCGTTAAGCGCCGTAATGAGCTGCAAGCTAAATCCCGCGAGCCC
AGGCCCAAGCGCTCGGATGATGCCGAGGACGGAGAGAGAGGTCAGAAGAGGAAGCGCTCCGATACTCGTGGTGGA
AAAGGAAAGGATGGAAGGGATGCACGAGGTGGCCGAGATGGCCGAGATGGTCGTGATGCCAAGCGCGGCAAGACT
GGAAATGGAAATGCAAAGGGCCCCAAAGATGAAAAAGTGACGAATGAAGAGGAGGACAAGGCCGCTAAGCGCAAC
CGCATTATCGGGCAGAAGCGCATGAAGCGGAAGTCCCGCAAGGGGAATTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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