© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1515.t1 |
| Gene name | |
| Location | scaffold_02:180452..182135 |
| Strand | + |
| Gene length (bp) | 1683 |
| Transcript length (bp) | 1569 |
| Coding sequence length (bp) | 1569 |
| Protein length (aa) | 523 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 6.1E-12 | 275 | 342 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 30 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 29.55 | 16.52 | 42.58 |
| 5d_25C | Five days - 25 degrees Celsius | 18.21 | 9.06 | 27.37 |
| 7d_25C | Seven days - 25 degrees Celsius | 17.03 | 8.24 | 25.83 |
| 10d_25C | Ten days - 25 degrees Celsius | 9.63 | 3.96 | 15.30 |
| 7d_15C | Seven days - 15 degrees Celsius | 16.41 | 7.92 | 24.90 |
| 7d_30C | Seven days - 30 degrees Celsius | 15.38 | 7.38 | 23.38 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.058289 | no |
| 3d_25C | 7d_25C | 0.037164 | yes |
| 3d_25C | 7d_15C | 0.023923 | yes |
| 3d_25C | 7d_30C | 0.010083 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.872372 | no |
| 5d_25C | 7d_15C | 0.791790 | no |
| 5d_25C | 7d_30C | 0.634968 | no |
| 5d_25C | 10d_25C | 0.030646 | yes |
| 7d_25C | 7d_15C | 0.936179 | no |
| 7d_25C | 7d_30C | 0.801512 | no |
| 7d_25C | 10d_25C | 0.058634 | no |
| 7d_15C | 7d_30C | 0.881834 | no |
| 7d_15C | 10d_25C | 0.080143 | no |
| 7d_30C | 10d_25C | 0.138887 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1515.t1 MAPDKRVSKRKAAPVAADSPAKKTKKVEAKPDETTKEAAPKSILKKNEKSTKPKAEKAAAPAKTNGEPTRQVKPR KRAADFLTDEEPEEATAPVKADKKAEKKPAAKKSKKEEVEAAPAPKKAAAKKSKKEEAEATPASKKSKKEEVEAA PASKKAAAKKSKKEEAEATPAPKKAAAKKAAPKPKKAEPVVESEEEDAEEDVSPADESEAENEGDDDQTEALIKG FESSGDEDESDGEGYKEGEPIPKAPDTKKAERKLAKELRKNGPPEEPGTVYIGRIPHGFYEHQMKAYFSQFGEIT KLRLSRNRLTGRSKHYAFIEFSSTTVAKIVADTMDNYLMYGHIVKCKFVPKEQLHPEIWKGANRRFKVTPWNRIE KKRLVKGKTRDQWSKSIESEQKKRQDKQEKLKKALGYEFDLPQLKSVDDVPIQEAPKAVEAAEPTDTATEEPAKA IEAPAPVEAPVEAPVEAPVEAPVPTDDTSKKVKKGKKETPKAAATESPAAKSPATKAKGKVTKKATKTKSKA* |
| Coding | >Pro_DTO377G3_2|g1515.t1 ATGGCTCCCGATAAGAGAGTTTCAAAGCGCAAGGCTGCGCCTGTCGCCGCCGATTCACCCGCCAAAAAGACCAAG AAGGTCGAGGCTAAGCCTGATGAGACAACCAAAGAGGCTGCTCCTAAGTCTATCTTGAAGAAGAATGAGAAGAGC ACCAAGCCTAAGGCAGAGAAGGCTGCTGCGCCGGCCAAGACCAATGGCGAGCCCACTCGCCAGGTCAAGCCTCGC AAGCGTGCTGCCGACTTCCTCACCGACGAGGAGCCCGAAGAGGCAACTGCGCCTGTGAAGGCCGACAAGAAGGCC GAGAAGAAGCCTGCGGCTAAGAAGTCCAAGAAGGAGGAGGTCGAGGCCGCGCCCGCGCCCAAGAAGGCTGCCGCT AAAAAGTCTAAGAAGGAGGAGGCTGAGGCCACCCCCGCTTCTAAAAAGTCCAAGAAGGAGGAGGTCGAGGCCGCG CCCGCTTCCAAGAAGGCTGCCGCTAAAAAGTCTAAGAAGGAGGAGGCTGAGGCCACCCCCGCTCCCAAGAAGGCC GCCGCGAAGAAGGCTGCCCCCAAGCCCAAGAAGGCCGAGCCCGTCGTTGAGTCCGAAGAGGAAGATGCCGAGGAG GATGTCTCCCCTGCTGATGAGAGTGAGGCTGAGAACGAGGGTGATGACGACCAGACTGAGGCTCTGATCAAGGGC TTCGAGAGCAGTGGCGACGAGGACGAGTCTGATGGTGAGGGTTACAAAGAGGGTGAACCTATCCCCAAGGCCCCA GATACCAAGAAGGCCGAGCGCAAGCTGGCCAAGGAGCTGCGCAAGAACGGCCCCCCCGAGGAGCCCGGCACTGTT TACATTGGACGTATCCCCCACGGTTTCTACGAGCACCAGATGAAGGCCTACTTCTCCCAATTTGGCGAAATCACC AAACTCCGTCTTTCGCGCAACCGCCTCACCGGCCGCTCCAAGCACTACGCTTTCATTGAATTCTCCTCGACCACC GTTGCCAAGATCGTCGCCGATACAATGGACAACTACCTTATGTATGGCCACATCGTCAAGTGCAAGTTCGTCCCC AAAGAACAGCTGCACCCTGAGATTTGGAAGGGCGCCAACCGTCGCTTCAAGGTTACGCCATGGAACCGCATCGAG AAGAAGCGTCTTGTGAAGGGCAAGACACGTGACCAGTGGTCGAAGAGTATCGAGTCCGAGCAGAAGAAGAGACAG GACAAGCAGGAGAAGCTCAAGAAGGCCCTTGGTTACGAGTTTGATCTTCCCCAACTGAAGAGCGTCGACGATGTC CCCATCCAAGAGGCCCCCAAGGCTGTCGAGGCCGCTGAGCCCACTGACACTGCCACCGAGGAGCCTGCCAAGGCC ATCGAGGCCCCTGCTCCCGTTGAAGCCCCTGTTGAAGCTCCCGTTGAAGCCCCCGTTGAGGCTCCTGTCCCTACC GATGATACCTCCAAGAAGGTCAAGAAGGGCAAGAAGGAGACACCCAAGGCGGCTGCTACAGAGTCACCGGCTGCT AAGTCTCCTGCCACCAAGGCGAAGGGAAAGGTCACTAAGAAGGCCACCAAGACAAAGTCCAAGGCGTAA |
| Transcript | >Pro_DTO377G3_2|g1515.t1 ATGGCTCCCGATAAGAGAGTTTCAAAGCGCAAGGCTGCGCCTGTCGCCGCCGATTCACCCGCCAAAAAGACCAAG AAGGTCGAGGCTAAGCCTGATGAGACAACCAAAGAGGCTGCTCCTAAGTCTATCTTGAAGAAGAATGAGAAGAGC ACCAAGCCTAAGGCAGAGAAGGCTGCTGCGCCGGCCAAGACCAATGGCGAGCCCACTCGCCAGGTCAAGCCTCGC AAGCGTGCTGCCGACTTCCTCACCGACGAGGAGCCCGAAGAGGCAACTGCGCCTGTGAAGGCCGACAAGAAGGCC GAGAAGAAGCCTGCGGCTAAGAAGTCCAAGAAGGAGGAGGTCGAGGCCGCGCCCGCGCCCAAGAAGGCTGCCGCT AAAAAGTCTAAGAAGGAGGAGGCTGAGGCCACCCCCGCTTCTAAAAAGTCCAAGAAGGAGGAGGTCGAGGCCGCG CCCGCTTCCAAGAAGGCTGCCGCTAAAAAGTCTAAGAAGGAGGAGGCTGAGGCCACCCCCGCTCCCAAGAAGGCC GCCGCGAAGAAGGCTGCCCCCAAGCCCAAGAAGGCCGAGCCCGTCGTTGAGTCCGAAGAGGAAGATGCCGAGGAG GATGTCTCCCCTGCTGATGAGAGTGAGGCTGAGAACGAGGGTGATGACGACCAGACTGAGGCTCTGATCAAGGGC TTCGAGAGCAGTGGCGACGAGGACGAGTCTGATGGTGAGGGTTACAAAGAGGGTGAACCTATCCCCAAGGCCCCA GATACCAAGAAGGCCGAGCGCAAGCTGGCCAAGGAGCTGCGCAAGAACGGCCCCCCCGAGGAGCCCGGCACTGTT TACATTGGACGTATCCCCCACGGTTTCTACGAGCACCAGATGAAGGCCTACTTCTCCCAATTTGGCGAAATCACC AAACTCCGTCTTTCGCGCAACCGCCTCACCGGCCGCTCCAAGCACTACGCTTTCATTGAATTCTCCTCGACCACC GTTGCCAAGATCGTCGCCGATACAATGGACAACTACCTTATGTATGGCCACATCGTCAAGTGCAAGTTCGTCCCC AAAGAACAGCTGCACCCTGAGATTTGGAAGGGCGCCAACCGTCGCTTCAAGGTTACGCCATGGAACCGCATCGAG AAGAAGCGTCTTGTGAAGGGCAAGACACGTGACCAGTGGTCGAAGAGTATCGAGTCCGAGCAGAAGAAGAGACAG GACAAGCAGGAGAAGCTCAAGAAGGCCCTTGGTTACGAGTTTGATCTTCCCCAACTGAAGAGCGTCGACGATGTC CCCATCCAAGAGGCCCCCAAGGCTGTCGAGGCCGCTGAGCCCACTGACACTGCCACCGAGGAGCCTGCCAAGGCC ATCGAGGCCCCTGCTCCCGTTGAAGCCCCTGTTGAAGCTCCCGTTGAAGCCCCCGTTGAGGCTCCTGTCCCTACC GATGATACCTCCAAGAAGGTCAAGAAGGGCAAGAAGGAGACACCCAAGGCGGCTGCTACAGAGTCACCGGCTGCT AAGTCTCCTGCCACCAAGGCGAAGGGAAAGGTCACTAAGAAGGCCACCAAGACAAAGTCCAAGGCGTAA |
| Gene | >Pro_DTO377G3_2|g1515.t1 ATGGCTCCCGATAAGAGAGTTTCAAAGCGCAAGGGTATGTACAATGGTTTTGGTTGGCGAAATTCTCTTTCCTTT CACTAACGATACTACAGCTGCGCCTGTCGCCGCCGATTCACCCGCCAAAAAGACCAAGAAGGTCGAGGCTAAGCC TGATGAGACAACCAAAGAGGCTGCTCCTAAGTCTATCTTGAAGAAGAATGAGAAGAGCACCAAGCCTAAGGCAGA GAAGGCTGCTGCGCCGGCCAAGACCAATGGCGAGCCCACTCGCCAGGTCAAGCCTCGCAAGCGTGCTGCCGACTT CCTCACCGACGAGGAGCCCGAAGAGGCAACTGCGCCTGTGAAGGCCGACAAGAAGGCCGAGAAGAAGCCTGCGGC TAAGAAGTCCAAGAAGGAGGAGGTCGAGGCCGCGCCCGCGCCCAAGAAGGCTGCCGCTAAAAAGTCTAAGAAGGA GGAGGCTGAGGCCACCCCCGCTTCTAAAAAGTCCAAGAAGGAGGAGGTCGAGGCCGCGCCCGCTTCCAAGAAGGC TGCCGCTAAAAAGTCTAAGAAGGAGGAGGCTGAGGCCACCCCCGCTCCCAAGAAGGCCGCCGCGAAGAAGGCTGC CCCCAAGCCCAAGAAGGCCGAGCCCGTCGTTGAGTCCGAAGAGGAAGATGCCGAGGAGGATGTCTCCCCTGCTGA TGAGAGTGAGGCTGAGAACGAGGGTGATGACGACCAGACTGAGGCTCTGATCAAGGGCTTCGAGAGCAGTGGCGA CGAGGACGAGTCTGATGGTGAGGGTTACAAAGAGGGTGAACCTATCCCCAAGGCCCCAGATACCAAGAAGGCCGA GCGCAAGCTGGCCAAGGAGCTGCGCAAGAACGGCCCCCCCGAGGAGCCCGGCACTGTTTACATTGGGTGAGTTTC GACCGTAATTCATGATCATTTTGAACCATCTAACATTTCATTTCCAGACGTATCCCCCACGGTTTCTACGAGCAC CAGATGAAGGCCTACTTCTCCCAATTTGGCGAAATCACCAAACTCCGTCTTTCGCGCAACCGCCTCACCGGCCGC TCCAAGCACTACGCTTTCATTGAATTCTCCTCGACCACCGTTGCCAAGATCGTCGCCGATACAATGGACAACTAC CTTATGTATGGCCACATCGTCAAGTGCAAGTTCGTCCCCAAAGAACAGCTGCACCCTGAGATTTGGAAGGGCGCC AACCGTCGCTTCAAGGTTACGCCATGGAACCGCATCGAGAAGAAGCGTCTTGTGAAGGGCAAGACACGTGACCAG TGGTCGAAGAGTATCGAGTCCGAGCAGAAGAAGAGACAGGACAAGCAGGAGAAGCTCAAGAAGGCCCTTGGTTAC GAGTTTGATCTTCCCCAACTGAAGAGCGTCGACGATGTCCCCATCCAAGAGGCCCCCAAGGCTGTCGAGGCCGCT GAGCCCACTGACACTGCCACCGAGGAGCCTGCCAAGGCCATCGAGGCCCCTGCTCCCGTTGAAGCCCCTGTTGAA GCTCCCGTTGAAGCCCCCGTTGAGGCTCCTGTCCCTACCGATGATACCTCCAAGAAGGTCAAGAAGGGCAAGAAG GAGACACCCAAGGCGGCTGCTACAGAGTCACCGGCTGCTAAGTCTCCTGCCACCAAGGCGAAGGGAAAGGTCACT AAGAAGGCCACCAAGACAAAGTCCAAGGCGTAA |