© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1512.t1 |
| Gene name | |
| Location | scaffold_02:174833..177015 |
| Strand | + |
| Gene length (bp) | 2182 |
| Transcript length (bp) | 1557 |
| Coding sequence length (bp) | 1557 |
| Protein length (aa) | 519 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13520 | AA_permease_2 | Amino acid permease | 1.3E-44 | 43 | 486 |
| PF00324 | AA_permease | Amino acid permease | 3.8E-13 | 61 | 488 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 69 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 38 | 60 | 22 |
| 2 | 70 | 92 | 22 |
| 3 | 113 | 135 | 22 |
| 4 | 165 | 187 | 22 |
| 5 | 194 | 216 | 22 |
| 6 | 236 | 258 | 22 |
| 7 | 279 | 301 | 22 |
| 8 | 321 | 343 | 22 |
| 9 | 382 | 404 | 22 |
| 10 | 408 | 430 | 22 |
| 11 | 451 | 472 | 21 |
| 12 | 482 | 504 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 4.06 | 1.09 | 7.02 |
| 5d_25C | Five days - 25 degrees Celsius | 6.59 | 2.40 | 10.78 |
| 7d_25C | Seven days - 25 degrees Celsius | 6.26 | 2.24 | 10.29 |
| 10d_25C | Ten days - 25 degrees Celsius | 3.87 | 1.17 | 6.57 |
| 7d_15C | Seven days - 15 degrees Celsius | 8.54 | 3.32 | 13.76 |
| 7d_30C | Seven days - 30 degrees Celsius | 5.13 | 1.67 | 8.60 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.221825 | no |
| 3d_25C | 7d_25C | 0.280671 | no |
| 3d_25C | 7d_15C | 0.038966 | yes |
| 3d_25C | 7d_30C | 0.623031 | no |
| 3d_25C | 10d_25C | 0.941115 | no |
| 5d_25C | 7d_25C | 0.926853 | no |
| 5d_25C | 7d_15C | 0.532544 | no |
| 5d_25C | 7d_30C | 0.576551 | no |
| 5d_25C | 10d_25C | 0.158863 | no |
| 7d_25C | 7d_15C | 0.434628 | no |
| 7d_25C | 7d_30C | 0.673360 | no |
| 7d_25C | 10d_25C | 0.207293 | no |
| 7d_15C | 7d_30C | 0.162495 | no |
| 7d_15C | 10d_25C | 0.018295 | yes |
| 7d_30C | 10d_25C | 0.527564 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1512.t1 MDDLKNTEEFLAQEVNASDENTLERLGYKQVLNRSYSLFENFSTSFAALYFVGGVRVTFTTGIAAGGPLAYWTSY IITCVFTFITAAVIAEACSASPSAGSIYLWAAEAGGKRFGRLFGFVVAWWSTTAWTTFCASNTQSAVNYMLSELT VFNVDFPTDVSNIKFRAVQWICTEILLALAALMNLASARVFKYVFWFSTGAVFLDFILNVVWLPIGAHNTFGLRT AHEAFMTTYNGTGAPAGWNWCLSYLATAGILIGFDASGHVAEETKNAAVNAAKGIFWSTIVSGVLGFSAVILFLF TSPPIDVLFSYNAPQPFVPLYAALLGEGGHVFMNVLSVVALWLNTAIAITAASRLVFAVARDGVLPLSGWVSRVS NEGQPRNAVLVVWGVAAIITCTILPSGVAFTSLVSAAGVPSAAAYGLISLGRLTLTSGEKIEAKWSLGRLSKPFQ LISVLWNGWVVAVLFSPYEFPVEASTLNYAPIIMAIVTIFALISWFFTPATAWVPRGRLSQPVADIAN* |
| Coding | >Pro_DTO377G3_2|g1512.t1 ATGGATGATCTTAAGAATACTGAAGAATTTTTGGCGCAGGAGGTGAATGCCAGTGATGAGAATACTTTGGAGCGT CTAGGGTATAAACAAGTTCTTAACCGCAGCTATTCACTTTTTGAGAATTTCTCAACCTCGTTTGCTGCTCTATAT TTCGTCGGTGGAGTTCGTGTGACATTCACGACGGGTATCGCAGCTGGAGGGCCACTGGCTTATTGGACGAGTTAT ATTATAACCTGTGTGTTTACATTCATCACAGCAGCTGTGATCGCAGAAGCGTGTTCGGCATCTCCTTCTGCTGGT TCGATTTATCTCTGGGCTGCGGAGGCAGGTGGTAAAAGATTTGGGCGACTCTTTGGCTTCGTTGTAGCCTGGTGG AGCACAACGGCTTGGACAACATTTTGTGCCAGCAATACCCAGTCAGCTGTGAACTACATGCTTTCGGAATTGACT GTTTTCAATGTCGACTTTCCCACCGATGTCTCAAATATCAAGTTTCGCGCTGTCCAATGGATCTGCACCGAAATC CTCCTGGCTTTAGCCGCATTGATGAACCTCGCATCTGCGCGAGTATTCAAATACGTGTTTTGGTTCTCAACCGGT GCTGTCTTTCTGGACTTCATATTGAACGTCGTCTGGCTTCCAATCGGTGCGCACAACACCTTCGGCCTGCGGACT GCTCATGAAGCTTTCATGACTACATATAACGGAACGGGAGCTCCAGCTGGTTGGAACTGGTGTCTTTCATATCTG GCCACAGCAGGTATTCTGATCGGATTTGATGCCTCCGGTCATGTTGCCGAAGAGACGAAGAATGCCGCCGTCAAT GCCGCTAAGGGTATCTTCTGGAGTACAATCGTCAGTGGAGTTCTTGGCTTCTCTGCCGTGATCTTATTCCTTTTC ACATCGCCGCCAATCGATGTTCTTTTCTCATATAACGCACCCCAACCTTTCGTGCCCTTGTATGCTGCACTTCTG GGTGAAGGCGGACATGTTTTTATGAACGTTCTCTCTGTCGTAGCTTTATGGCTAAATACCGCCATCGCCATTACA GCAGCCTCCCGTCTTGTCTTCGCCGTCGCCCGTGACGGAGTACTCCCACTATCTGGATGGGTATCGCGGGTTTCT AACGAGGGTCAACCTAGGAACGCAGTCCTTGTTGTGTGGGGTGTGGCCGCGATTATTACCTGCACTATCCTGCCG TCCGGAGTGGCATTTACTTCTCTGGTCTCAGCTGCGGGTGTTCCTTCAGCTGCGGCATATGGGCTCATTAGTCTT GGAAGGTTGACTTTGACCTCGGGTGAGAAGATTGAGGCTAAATGGTCTCTCGGGCGACTAAGCAAGCCGTTCCAA CTCATATCGGTTTTGTGGAACGGTTGGGTTGTTGCGGTACTCTTCTCACCATATGAATTCCCGGTTGAGGCCTCG ACGCTAAATTATGCGCCAATTATCATGGCTATTGTGACTATCTTCGCGCTCATCTCGTGGTTCTTCACTCCAGCG ACAGCGTGGGTACCGCGGGGCCGGCTGTCCCAACCTGTTGCAGATATTGCAAATTGA |
| Transcript | >Pro_DTO377G3_2|g1512.t1 ATGGATGATCTTAAGAATACTGAAGAATTTTTGGCGCAGGAGGTGAATGCCAGTGATGAGAATACTTTGGAGCGT CTAGGGTATAAACAAGTTCTTAACCGCAGCTATTCACTTTTTGAGAATTTCTCAACCTCGTTTGCTGCTCTATAT TTCGTCGGTGGAGTTCGTGTGACATTCACGACGGGTATCGCAGCTGGAGGGCCACTGGCTTATTGGACGAGTTAT ATTATAACCTGTGTGTTTACATTCATCACAGCAGCTGTGATCGCAGAAGCGTGTTCGGCATCTCCTTCTGCTGGT TCGATTTATCTCTGGGCTGCGGAGGCAGGTGGTAAAAGATTTGGGCGACTCTTTGGCTTCGTTGTAGCCTGGTGG AGCACAACGGCTTGGACAACATTTTGTGCCAGCAATACCCAGTCAGCTGTGAACTACATGCTTTCGGAATTGACT GTTTTCAATGTCGACTTTCCCACCGATGTCTCAAATATCAAGTTTCGCGCTGTCCAATGGATCTGCACCGAAATC CTCCTGGCTTTAGCCGCATTGATGAACCTCGCATCTGCGCGAGTATTCAAATACGTGTTTTGGTTCTCAACCGGT GCTGTCTTTCTGGACTTCATATTGAACGTCGTCTGGCTTCCAATCGGTGCGCACAACACCTTCGGCCTGCGGACT GCTCATGAAGCTTTCATGACTACATATAACGGAACGGGAGCTCCAGCTGGTTGGAACTGGTGTCTTTCATATCTG GCCACAGCAGGTATTCTGATCGGATTTGATGCCTCCGGTCATGTTGCCGAAGAGACGAAGAATGCCGCCGTCAAT GCCGCTAAGGGTATCTTCTGGAGTACAATCGTCAGTGGAGTTCTTGGCTTCTCTGCCGTGATCTTATTCCTTTTC ACATCGCCGCCAATCGATGTTCTTTTCTCATATAACGCACCCCAACCTTTCGTGCCCTTGTATGCTGCACTTCTG GGTGAAGGCGGACATGTTTTTATGAACGTTCTCTCTGTCGTAGCTTTATGGCTAAATACCGCCATCGCCATTACA GCAGCCTCCCGTCTTGTCTTCGCCGTCGCCCGTGACGGAGTACTCCCACTATCTGGATGGGTATCGCGGGTTTCT AACGAGGGTCAACCTAGGAACGCAGTCCTTGTTGTGTGGGGTGTGGCCGCGATTATTACCTGCACTATCCTGCCG TCCGGAGTGGCATTTACTTCTCTGGTCTCAGCTGCGGGTGTTCCTTCAGCTGCGGCATATGGGCTCATTAGTCTT GGAAGGTTGACTTTGACCTCGGGTGAGAAGATTGAGGCTAAATGGTCTCTCGGGCGACTAAGCAAGCCGTTCCAA CTCATATCGGTTTTGTGGAACGGTTGGGTTGTTGCGGTACTCTTCTCACCATATGAATTCCCGGTTGAGGCCTCG ACGCTAAATTATGCGCCAATTATCATGGCTATTGTGACTATCTTCGCGCTCATCTCGTGGTTCTTCACTCCAGCG ACAGCGTGGGTACCGCGGGGCCGGCTGTCCCAACCTGTTGCAGATATTGCAAATTGA |
| Gene | >Pro_DTO377G3_2|g1512.t1 ATGGATGATCTTAAGAATACTGAAGAATTTTTGGCGCAGGAGGTGAATGCCAGTGATGAGAATACTTTGGTATGG TATCCTCTATGTGCAACGGAGATATAGCACGAATTAACATCTGTTGTCTCTCATAGGAGCGTCTAGGGTATAAAC AAGTGAGTGGAATGATATAAATCTTCGATTCGAGAACTATATGCTGACTTGATACTTCCCGACATAGGTTCTTAA CCGCAGCTATTCACTTTTTGAGAATTTCTCAACCTCGTTTGGTATCTATTGCTGCGCATGGCGTCTTGTTCTTGG TCACTAACTGTTTCTATTAGCTGCTCTATATTTCGTCGGTGGAGTTCGTGTGACATTCACGACGGGTATCGCAGC TGGAGGGCCACTGGCTTATTGGTAATGATCCCGAACCGATTCAAGCGCAATAAGGTGGCTTTATTAACCTATATA TTAGGACGAGTTATATTATAACCTGTGTGTTTACATTCATCACAGCAGCTGTGATCGCAGAAGCGTGTTCGGCAT CTCCTTCTGCTGGTTCGATTTATCTCTGGGCTGCGGAGGCAGGTGGTAAAAGATTTGGGCGACTCTTTGGCTTCG TTGTAGCCTGGTGGAGCACAACGGCTTGGACAACATTTTGTGCCAGTATGTCTCTTGCGTGTCATTGTTGTCCAT ATCTGAACTGACTGATTGACGAATGATAGGCAATACCCAGTCAGCTGTGAACTACATGCTTTCGGTGGGTATCAT GTTGTTATATCTGACAGTGTCAACTCTGAACTAATTTGACTTAGGAATTGACTGTTTTCAATGTCGACTTTCCCA CCGATGTCTCAAATATCAAGTTTCGCGCTGTCCAATGGATCTGCACCGAAATCCTCCTGGCTTTAGCCGCATTGA TGAACCTCGCATCTGGTATGTACACTCTCATAGATGGCCTAGAATGATGGGCTCACCTCTTAATCTTGGCCTGCA ATGCTGATTCAATTGTACAGCGCGAGTATTCAAATACGTGTTTTGGTTCTCAACCGGTGCTGTCTTTCTGGACTT CATATTGAACGTCGTCTGGCTTCCAATCGGTGCGCACAACACCTTCGGCCTGCGGACTGCTCATGAAGCTTTCAT GACTACATATAACGGAACGGGAGCTCCAGCTGGTTGGAACTGGTGTCTTTCATATCTGGCCACAGCAGGTATTCT GATCGGATTTGATGCCTCCGGTCATGTTGCCGAAGAGACGAAGAATGCCGCCGTCAATGCCGCTAAGGGTATCTT CTGGAGTACAATCGTCAGTGGAGTTCTTGGCTTCTCTGCCGTGATCTTATTCCTTTTCACATCGGTAAGTCTATT CAGGAACTTTTATATAGACCCATAAACTAACAATTGCCAGCCGCCAATCGATGTTCTTTTCTCATATAACGCACC CCAACCTTTCGTGCCCTTGTATGCTGCACTTCTGGGTGAAGGCGGACATGTTTTTATGAACGTTCTCTCTGTCGT AGCTTTATGGCTAGTATGTTTTCGATTGCTCTTTCCTACAACTGACAACAAATGCTCGATGTAAGAGGACATGCT AACCTATCTGATAGAATACCGCCATCGCCATTACAGCAGCCTCCCGTCTTGTCTTCGCCGTCGCCCGTGACGGAG TACTCCCACTATCTGGATGGGTATCGCGGGTTTCTAACGAGGGTCAACCTAGGAACGCAGTCCTTGTTGTGTGGG GTGTGGCCGCGATTATTACCTGCACTATCCTGCCGTCCGGAGTGGCATTTACTTCTCTGGTCTCAGCTGCGGGTG TTCCTTCAGCTGCGGCATATGGGCTCATTAGTCTTGGAAGGTTGACTTTGACCTCGGGTGAGAAGATTGAGGCTA AATGGTCTCTCGGGCGACTAAGCAAGCCGTTCCAACTCATATCGGTTTTGTGGAACGGTTGGGTTGTTGCGGTAC TCTTCTCACCATATGAATTCCCGGTTGAGGCCTCGACGCTAAATTGTAGGTGTCGTCTTGTCGCGAAACTAGCAG CCATTGGAAGAGACTTTGTGCTAATATATTTCCAGATGCGCCAATTATCATGGCTATTGTGACTATCTTCGCGCT CATCTCGTGGTTCTTCACTCCAGCGACAGCGTGGGTACCGCGGGGCCGGCTGTCCCAACCTGTTGCAGATATTGC AAATTGA |