© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1510.t1 |
| Gene name | |
| Location | scaffold_02:170420..171563 |
| Strand | - |
| Gene length (bp) | 1143 |
| Transcript length (bp) | 1143 |
| Coding sequence length (bp) | 1143 |
| Protein length (aa) | 381 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF11913 | DUF3431 | Protein of unknown function (DUF3431) | 2.3E-69 | 68 | 344 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 32 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 26 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 25.23 | 12.50 | 37.96 |
| 5d_25C | Five days - 25 degrees Celsius | 20.67 | 9.74 | 31.60 |
| 7d_25C | Seven days - 25 degrees Celsius | 18.34 | 8.35 | 28.34 |
| 10d_25C | Ten days - 25 degrees Celsius | 20.92 | 9.90 | 31.93 |
| 7d_15C | Seven days - 15 degrees Celsius | 17.31 | 7.72 | 26.90 |
| 7d_30C | Seven days - 30 degrees Celsius | 22.19 | 10.65 | 33.72 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.562030 | no |
| 3d_25C | 7d_25C | 0.309742 | no |
| 3d_25C | 7d_15C | 0.222975 | no |
| 3d_25C | 7d_30C | 0.730952 | no |
| 3d_25C | 10d_25C | 0.587985 | no |
| 5d_25C | 7d_25C | 0.762269 | no |
| 5d_25C | 7d_15C | 0.638461 | no |
| 5d_25C | 7d_30C | 0.867747 | no |
| 5d_25C | 10d_25C | 0.981345 | no |
| 7d_25C | 7d_15C | 0.899619 | no |
| 7d_25C | 7d_30C | 0.590963 | no |
| 7d_25C | 10d_25C | 0.735608 | no |
| 7d_15C | 7d_30C | 0.477744 | no |
| 7d_15C | 10d_25C | 0.609995 | no |
| 7d_30C | 10d_25C | 0.892395 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1510.t1 MGRKVQRSLIQLIFFLCILFFILFLNRPQSTKDKLFAWTKVRYQTTSSIIPEARGVCPGLAESTKPALIVSHVSS DGDPSWLEPLRTQYHVCMYQVDAPADKTSKLLQVPANRGHEAMAYLTFLIDNYADIPSAGAVFVHGSRWAWHNDI PDYDNAALLRSLDIHAALKAGYSNLRCDWSAGTCPSSVPAQGSLETRLSSAVSPWSARSASDLALPEALGQIFGG DADARVEEITSAVHLYLGRQDAVRAQCCAQFVVSRERIWQHAQSEYIALRQWLLDGSDDGVSRNVYRESRAAPGD DRIAGRIVSYIWHILFADHAGERGIDLDRLNRDSCPSAAECYCRLYGKCDLKCRGPGSCKGQYSVPKDYRLPEDW EKTHS* |
| Coding | >Pro_DTO377G3_2|g1510.t1 ATGGGCCGAAAAGTACAAAGATCACTTATCCAACTAATCTTCTTTCTCTGCATCTTATTTTTCATCCTATTCTTA AACCGCCCGCAATCAACCAAGGACAAACTCTTTGCCTGGACCAAAGTCCGCTACCAAACAACCTCATCCATCATC CCAGAAGCCCGCGGAGTTTGCCCCGGCCTAGCAGAATCAACCAAACCAGCCCTGATAGTCTCCCATGTCTCGTCG GACGGCGACCCGTCCTGGCTAGAGCCGCTCCGCACCCAGTACCATGTATGCATGTACCAAGTGGACGCGCCGGCA GACAAAACCTCCAAACTGCTCCAAGTCCCCGCAAACCGCGGACATGAAGCAATGGCCTACTTAACCTTCCTAATC GATAATTACGCGGACATACCCTCCGCCGGCGCCGTCTTTGTGCACGGCAGCCGCTGGGCTTGGCACAACGACATC CCGGACTACGACAACGCCGCACTCCTACGCAGCCTGGACATCCACGCCGCACTGAAAGCCGGGTACAGCAACCTG CGCTGCGACTGGAGCGCCGGCACGTGTCCTTCTTCCGTGCCCGCGCAGGGCAGTCTCGAGACGAGGCTGTCGAGC GCCGTGTCGCCGTGGAGTGCGCGCTCGGCATCGGATCTCGCACTGCCGGAGGCGCTTGGCCAGATCTTTGGCGGG GATGCTGATGCGCGTGTCGAGGAGATTACCAGTGCTGTCCATCTTTATCTTGGTCGGCAGGATGCCGTTCGCGCG CAGTGCTGTGCGCAGTTTGTGGTTTCCCGCGAGCGCATCTGGCAGCATGCTCAGAGTGAGTATATTGCGCTGAGG CAGTGGCTGCTGGATGGGAGTGATGATGGGGTTTCGCGGAATGTGTATCGGGAGTCTAGGGCTGCGCCTGGTGAT GACCGTATAGCCGGGCGGATTGTTTCGTACATTTGGCACATTCTTTTTGCGGACCATGCTGGTGAACGGGGAATT GATCTTGACCGGTTGAATCGCGATTCTTGTCCTAGTGCTGCTGAGTGCTATTGTCGGTTATATGGCAAGTGTGAT TTGAAGTGCCGGGGTCCGGGAAGCTGTAAAGGGCAGTATTCTGTGCCGAAGGACTACAGGCTCCCCGAGGATTGG GAGAAGACGCATTCATGA |
| Transcript | >Pro_DTO377G3_2|g1510.t1 ATGGGCCGAAAAGTACAAAGATCACTTATCCAACTAATCTTCTTTCTCTGCATCTTATTTTTCATCCTATTCTTA AACCGCCCGCAATCAACCAAGGACAAACTCTTTGCCTGGACCAAAGTCCGCTACCAAACAACCTCATCCATCATC CCAGAAGCCCGCGGAGTTTGCCCCGGCCTAGCAGAATCAACCAAACCAGCCCTGATAGTCTCCCATGTCTCGTCG GACGGCGACCCGTCCTGGCTAGAGCCGCTCCGCACCCAGTACCATGTATGCATGTACCAAGTGGACGCGCCGGCA GACAAAACCTCCAAACTGCTCCAAGTCCCCGCAAACCGCGGACATGAAGCAATGGCCTACTTAACCTTCCTAATC GATAATTACGCGGACATACCCTCCGCCGGCGCCGTCTTTGTGCACGGCAGCCGCTGGGCTTGGCACAACGACATC CCGGACTACGACAACGCCGCACTCCTACGCAGCCTGGACATCCACGCCGCACTGAAAGCCGGGTACAGCAACCTG CGCTGCGACTGGAGCGCCGGCACGTGTCCTTCTTCCGTGCCCGCGCAGGGCAGTCTCGAGACGAGGCTGTCGAGC GCCGTGTCGCCGTGGAGTGCGCGCTCGGCATCGGATCTCGCACTGCCGGAGGCGCTTGGCCAGATCTTTGGCGGG GATGCTGATGCGCGTGTCGAGGAGATTACCAGTGCTGTCCATCTTTATCTTGGTCGGCAGGATGCCGTTCGCGCG CAGTGCTGTGCGCAGTTTGTGGTTTCCCGCGAGCGCATCTGGCAGCATGCTCAGAGTGAGTATATTGCGCTGAGG CAGTGGCTGCTGGATGGGAGTGATGATGGGGTTTCGCGGAATGTGTATCGGGAGTCTAGGGCTGCGCCTGGTGAT GACCGTATAGCCGGGCGGATTGTTTCGTACATTTGGCACATTCTTTTTGCGGACCATGCTGGTGAACGGGGAATT GATCTTGACCGGTTGAATCGCGATTCTTGTCCTAGTGCTGCTGAGTGCTATTGTCGGTTATATGGCAAGTGTGAT TTGAAGTGCCGGGGTCCGGGAAGCTGTAAAGGGCAGTATTCTGTGCCGAAGGACTACAGGCTCCCCGAGGATTGG GAGAAGACGCATTCATGA |
| Gene | >Pro_DTO377G3_2|g1510.t1 ATGGGCCGAAAAGTACAAAGATCACTTATCCAACTAATCTTCTTTCTCTGCATCTTATTTTTCATCCTATTCTTA AACCGCCCGCAATCAACCAAGGACAAACTCTTTGCCTGGACCAAAGTCCGCTACCAAACAACCTCATCCATCATC CCAGAAGCCCGCGGAGTTTGCCCCGGCCTAGCAGAATCAACCAAACCAGCCCTGATAGTCTCCCATGTCTCGTCG GACGGCGACCCGTCCTGGCTAGAGCCGCTCCGCACCCAGTACCATGTATGCATGTACCAAGTGGACGCGCCGGCA GACAAAACCTCCAAACTGCTCCAAGTCCCCGCAAACCGCGGACATGAAGCAATGGCCTACTTAACCTTCCTAATC GATAATTACGCGGACATACCCTCCGCCGGCGCCGTCTTTGTGCACGGCAGCCGCTGGGCTTGGCACAACGACATC CCGGACTACGACAACGCCGCACTCCTACGCAGCCTGGACATCCACGCCGCACTGAAAGCCGGGTACAGCAACCTG CGCTGCGACTGGAGCGCCGGCACGTGTCCTTCTTCCGTGCCCGCGCAGGGCAGTCTCGAGACGAGGCTGTCGAGC GCCGTGTCGCCGTGGAGTGCGCGCTCGGCATCGGATCTCGCACTGCCGGAGGCGCTTGGCCAGATCTTTGGCGGG GATGCTGATGCGCGTGTCGAGGAGATTACCAGTGCTGTCCATCTTTATCTTGGTCGGCAGGATGCCGTTCGCGCG CAGTGCTGTGCGCAGTTTGTGGTTTCCCGCGAGCGCATCTGGCAGCATGCTCAGAGTGAGTATATTGCGCTGAGG CAGTGGCTGCTGGATGGGAGTGATGATGGGGTTTCGCGGAATGTGTATCGGGAGTCTAGGGCTGCGCCTGGTGAT GACCGTATAGCCGGGCGGATTGTTTCGTACATTTGGCACATTCTTTTTGCGGACCATGCTGGTGAACGGGGAATT GATCTTGACCGGTTGAATCGCGATTCTTGTCCTAGTGCTGCTGAGTGCTATTGTCGGTTATATGGCAAGTGTGAT TTGAAGTGCCGGGGTCCGGGAAGCTGTAAAGGGCAGTATTCTGTGCCGAAGGACTACAGGCTCCCCGAGGATTGG GAGAAGACGCATTCATGA |