© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1509.t1 |
| Gene name | |
| Location | scaffold_02:168814..170246 |
| Strand | + |
| Gene length (bp) | 1432 |
| Transcript length (bp) | 1377 |
| Coding sequence length (bp) | 1377 |
| Protein length (aa) | 459 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00108 | Thiolase_N | Thiolase, N-terminal domain | 5.9E-17 | 12 | 231 |
| PF02803 | Thiolase_C | Thiolase, C-terminal domain | 2.7E-11 | 274 | 365 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016747 | acyltransferase activity, transferring groups other than amino-acyl groups | Yes |
| GO:0016746 | acyltransferase activity | No |
| GO:0016740 | transferase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 13 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 81.29 | 49.46 | 113.11 |
| 5d_25C | Five days - 25 degrees Celsius | 82.78 | 50.12 | 115.43 |
| 7d_25C | Seven days - 25 degrees Celsius | 74.65 | 44.70 | 104.59 |
| 10d_25C | Ten days - 25 degrees Celsius | 79.10 | 48.18 | 110.02 |
| 7d_15C | Seven days - 15 degrees Celsius | 75.61 | 45.94 | 105.27 |
| 7d_30C | Seven days - 30 degrees Celsius | 73.43 | 44.69 | 102.16 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.958008 | no |
| 3d_25C | 7d_25C | 0.780378 | no |
| 3d_25C | 7d_15C | 0.814867 | no |
| 3d_25C | 7d_30C | 0.726236 | no |
| 3d_25C | 10d_25C | 0.937460 | no |
| 5d_25C | 7d_25C | 0.728118 | no |
| 5d_25C | 7d_15C | 0.759770 | no |
| 5d_25C | 7d_30C | 0.671546 | no |
| 5d_25C | 10d_25C | 0.890348 | no |
| 7d_25C | 7d_15C | 0.972323 | no |
| 7d_25C | 7d_30C | 0.963742 | no |
| 7d_25C | 10d_25C | 0.858164 | no |
| 7d_15C | 7d_30C | 0.933134 | no |
| 7d_15C | 10d_25C | 0.891003 | no |
| 7d_30C | 10d_25C | 0.809461 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1509.t1 MGKKQGTPAYVLGVGMTKFIKPRGKVDYHELGYEAGIKAMLDAKINYDDVDQGIACYVYGDSTCGQRVFYQFGQT SIPIYNVNNNCSTGSTGLAMARNMVSHGVADCVLVVGFEKMNPGSLQSMYNDRENPTSLFGKMMAETRGMTNAPG AAQMFGNAGREYKEKYGAKNEDFAEIARINHEHSKRNPYSQFQTEYTLEQIINAPMIYEPLTKLQCCPTSDGGAA AVIVSQEFLDARPHLKEHAILIAGQCLATDDDTVYSKSSIDLMGFGMTRRACRTAVAEAGVNVKDIKVCELHDCF SANEMITIDALELSEPGQAHEMVRRGDITYGGKMVINPSGGLISKGHPLGATGIAQCAELVWHLRGWANNRLVDG TSAALQHNLGLGGAVVVTVYKRTDGKAATAVTSDVVGKINGLGYNPAVEAKGFTAEQAKSVVSKTHSSQYALSDT QERVLARF* |
| Coding | >Pro_DTO377G3_2|g1509.t1 ATGGGCAAGAAGCAAGGAACCCCCGCTTATGTACTGGGCGTTGGCATGACCAAGTTCATCAAGCCACGCGGTAAG GTCGACTACCATGAGCTCGGCTATGAGGCTGGTATTAAAGCCATGCTCGACGCCAAGATCAACTATGACGATGTT GACCAGGGCATTGCATGCTACGTCTACGGCGACAGCACCTGCGGCCAGCGCGTCTTCTACCAGTTCGGCCAGACC AGCATCCCTATCTACAACGTCAACAACAACTGTTCGACCGGCTCGACTGGCCTCGCCATGGCCCGCAATATGGTT TCCCATGGTGTTGCGGACTGTGTGCTGGTCGTCGGCTTCGAGAAGATGAACCCCGGTAGCTTGCAATCCATGTAC AACGATCGGGAGAACCCAACGTCACTGTTTGGGAAGATGATGGCCGAGACGCGAGGTATGACGAACGCGCCCGGT GCCGCACAGATGTTTGGAAACGCAGGTAGGGAATATAAGGAGAAGTACGGTGCTAAGAACGAGGACTTCGCCGAG ATCGCCCGCATCAACCACGAGCACTCCAAGCGGAACCCCTACTCGCAATTCCAGACCGAATATACCCTCGAGCAG ATCATAAACGCGCCCATGATCTACGAGCCTCTGACCAAGCTACAGTGCTGCCCAACCTCGGATGGCGGTGCCGCC GCCGTTATTGTCTCGCAGGAGTTCCTCGATGCGCGTCCCCACCTGAAAGAACATGCCATTCTCATCGCCGGTCAG TGTCTAGCCACCGATGACGACACAGTCTACAGCAAGAGCTCCATTGACCTGATGGGCTTCGGCATGACGCGTCGG GCGTGCCGCACTGCCGTAGCCGAGGCCGGCGTGAATGTCAAGGATATCAAGGTTTGCGAGCTGCATGATTGCTTC TCGGCCAATGAGATGATTACTATTGATGCGCTGGAGCTGAGTGAACCCGGCCAGGCCCATGAGATGGTCCGCCGT GGCGATATCACGTACGGCGGAAAGATGGTCATCAACCCATCTGGCGGTCTCATCTCCAAGGGTCACCCGCTTGGT GCTACGGGTATTGCGCAGTGTGCTGAGCTGGTCTGGCACCTGCGTGGCTGGGCCAACAATCGCCTGGTTGACGGT ACTTCCGCGGCACTGCAGCACAACCTCGGTCTGGGCGGTGCCGTTGTCGTCACCGTCTACAAGCGTACTGATGGC AAGGCCGCCACGGCTGTGACATCAGACGTCGTTGGCAAAATCAACGGTTTGGGCTATAACCCAGCTGTGGAGGCT AAGGGCTTCACTGCCGAGCAGGCCAAGTCCGTCGTGAGCAAGACGCACAGCTCTCAGTATGCCCTGTCAGATACC CAAGAGCGGGTCCTTGCCAGGTTCTAG |
| Transcript | >Pro_DTO377G3_2|g1509.t1 ATGGGCAAGAAGCAAGGAACCCCCGCTTATGTACTGGGCGTTGGCATGACCAAGTTCATCAAGCCACGCGGTAAG GTCGACTACCATGAGCTCGGCTATGAGGCTGGTATTAAAGCCATGCTCGACGCCAAGATCAACTATGACGATGTT GACCAGGGCATTGCATGCTACGTCTACGGCGACAGCACCTGCGGCCAGCGCGTCTTCTACCAGTTCGGCCAGACC AGCATCCCTATCTACAACGTCAACAACAACTGTTCGACCGGCTCGACTGGCCTCGCCATGGCCCGCAATATGGTT TCCCATGGTGTTGCGGACTGTGTGCTGGTCGTCGGCTTCGAGAAGATGAACCCCGGTAGCTTGCAATCCATGTAC AACGATCGGGAGAACCCAACGTCACTGTTTGGGAAGATGATGGCCGAGACGCGAGGTATGACGAACGCGCCCGGT GCCGCACAGATGTTTGGAAACGCAGGTAGGGAATATAAGGAGAAGTACGGTGCTAAGAACGAGGACTTCGCCGAG ATCGCCCGCATCAACCACGAGCACTCCAAGCGGAACCCCTACTCGCAATTCCAGACCGAATATACCCTCGAGCAG ATCATAAACGCGCCCATGATCTACGAGCCTCTGACCAAGCTACAGTGCTGCCCAACCTCGGATGGCGGTGCCGCC GCCGTTATTGTCTCGCAGGAGTTCCTCGATGCGCGTCCCCACCTGAAAGAACATGCCATTCTCATCGCCGGTCAG TGTCTAGCCACCGATGACGACACAGTCTACAGCAAGAGCTCCATTGACCTGATGGGCTTCGGCATGACGCGTCGG GCGTGCCGCACTGCCGTAGCCGAGGCCGGCGTGAATGTCAAGGATATCAAGGTTTGCGAGCTGCATGATTGCTTC TCGGCCAATGAGATGATTACTATTGATGCGCTGGAGCTGAGTGAACCCGGCCAGGCCCATGAGATGGTCCGCCGT GGCGATATCACGTACGGCGGAAAGATGGTCATCAACCCATCTGGCGGTCTCATCTCCAAGGGTCACCCGCTTGGT GCTACGGGTATTGCGCAGTGTGCTGAGCTGGTCTGGCACCTGCGTGGCTGGGCCAACAATCGCCTGGTTGACGGT ACTTCCGCGGCACTGCAGCACAACCTCGGTCTGGGCGGTGCCGTTGTCGTCACCGTCTACAAGCGTACTGATGGC AAGGCCGCCACGGCTGTGACATCAGACGTCGTTGGCAAAATCAACGGTTTGGGCTATAACCCAGCTGTGGAGGCT AAGGGCTTCACTGCCGAGCAGGCCAAGTCCGTCGTGAGCAAGACGCACAGCTCTCAGTATGCCCTGTCAGATACC CAAGAGCGGGTCCTTGCCAGGTTCTAG |
| Gene | >Pro_DTO377G3_2|g1509.t1 ATGGGCAAGAAGCAAGGAACCCCCGCTTATGTACTGGGCGTTGGCATGACCAAGTTCATCAAGCCACGCGGTAAG GTCGACTACCATGAGCTCGGCTATGAGGCTGGTATTAAAGCCATGCTCGACGCCAAGATCAACTATGACGATGTT GACCAGGGCATTGCATGCTACGTCTACGGCGACAGCACCTGCGGCCAGCGCGTCTTCTACCAGTTCGGCCAGACC AGCATCCCTATCTACAACGTCAACAACAACTGTTCGACCGGCTCGACTGGCCTCGCCATGGCCCGCAATATGGTT TCCCATGGTGTTGCGGACTGTGTGCTGGTCGTCGGCTTCGAGAAGATGAACCCCGGTAGCTTGCAATCCATGTAC AACGATCGGGAGAACCCAACGTCACTGTTTGGGAAGATGATGGCCGAGACGCGAGGTATGACGAACGCGCCCGGT GCCGCACAGATGTTTGGAAACGCAGGTAGGGAATATAAGGAGAAGTACACAACCTCTGGAGTAACAAGAAAGGAT ATCATGCTAACATGCGAAAAACAGGTACGGTGCTAAGAACGAGGACTTCGCCGAGATCGCCCGCATCAACCACGA GCACTCCAAGCGGAACCCCTACTCGCAATTCCAGACCGAATATACCCTCGAGCAGATCATAAACGCGCCCATGAT CTACGAGCCTCTGACCAAGCTACAGTGCTGCCCAACCTCGGATGGCGGTGCCGCCGCCGTTATTGTCTCGCAGGA GTTCCTCGATGCGCGTCCCCACCTGAAAGAACATGCCATTCTCATCGCCGGTCAGTGTCTAGCCACCGATGACGA CACAGTCTACAGCAAGAGCTCCATTGACCTGATGGGCTTCGGCATGACGCGTCGGGCGTGCCGCACTGCCGTAGC CGAGGCCGGCGTGAATGTCAAGGATATCAAGGTTTGCGAGCTGCATGATTGCTTCTCGGCCAATGAGATGATTAC TATTGATGCGCTGGAGCTGAGTGAACCCGGCCAGGCCCATGAGATGGTCCGCCGTGGCGATATCACGTACGGCGG AAAGATGGTCATCAACCCATCTGGCGGTCTCATCTCCAAGGGTCACCCGCTTGGTGCTACGGGTATTGCGCAGTG TGCTGAGCTGGTCTGGCACCTGCGTGGCTGGGCCAACAATCGCCTGGTTGACGGTACTTCCGCGGCACTGCAGCA CAACCTCGGTCTGGGCGGTGCCGTTGTCGTCACCGTCTACAAGCGTACTGATGGCAAGGCCGCCACGGCTGTGAC ATCAGACGTCGTTGGCAAAATCAACGGTTTGGGCTATAACCCAGCTGTGGAGGCTAAGGGCTTCACTGCCGAGCA GGCCAAGTCCGTCGTGAGCAAGACGCACAGCTCTCAGTATGCCCTGTCAGATACCCAAGAGCGGGTCCTTGCCAG GTTCTAG |