© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1491.t1 |
| Gene name | |
| Location | scaffold_02:125925..126870 |
| Strand | + |
| Gene length (bp) | 945 |
| Transcript length (bp) | 945 |
| Coding sequence length (bp) | 945 |
| Protein length (aa) | 315 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02826 | 2-Hacid_dh_C | D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain | 2.6E-44 | 103 | 286 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0051287 | NAD binding | Yes |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0036094 | small molecule binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 105.90 | 63.95 | 147.85 |
| 5d_25C | Five days - 25 degrees Celsius | 79.92 | 47.29 | 112.54 |
| 7d_25C | Seven days - 25 degrees Celsius | 73.35 | 42.96 | 103.73 |
| 10d_25C | Ten days - 25 degrees Celsius | 54.11 | 30.32 | 77.89 |
| 7d_15C | Seven days - 15 degrees Celsius | 107.19 | 64.95 | 149.42 |
| 7d_30C | Seven days - 30 degrees Celsius | 56.02 | 31.57 | 80.47 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.226560 | no |
| 3d_25C | 7d_25C | 0.098462 | no |
| 3d_25C | 7d_15C | 0.973693 | no |
| 3d_25C | 7d_30C | 0.002761 | yes |
| 3d_25C | 10d_25C | 0.001278 | yes |
| 5d_25C | 7d_25C | 0.783864 | no |
| 5d_25C | 7d_15C | 0.211835 | no |
| 5d_25C | 7d_30C | 0.137648 | no |
| 5d_25C | 10d_25C | 0.092792 | no |
| 7d_25C | 7d_15C | 0.082307 | no |
| 7d_25C | 7d_30C | 0.286389 | no |
| 7d_25C | 10d_25C | 0.213590 | no |
| 7d_15C | 7d_30C | 0.002761 | yes |
| 7d_15C | 10d_25C | 0.002297 | yes |
| 7d_30C | 10d_25C | 0.927142 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1491.t1 MKLLYPTSLYIDAKSLEGFSVELHPYDVTVPIPESLIDAEFLVTWANKATNLRDAASRMKNLRWIQSLAAGPNDV LGAGFDASRIAITTGSGLHDETVAEHTLGLLLNAVRRFYEMRDYQNRGEWPAHLGGPQPDRAPGTFRTLKGANIT IWGFGNIAKSLSPVLTALGANVTGVARSTGVRNGFEVVAEDRLQEILPKTDALVMILPGSASTNGALNAERLALL PSHAWVVNVGRGTSVDEDALLAALEKGSIGGAALDVFSVEPLPKESKLYAAPNLILSPHAAGGRPRGAEALIAFN LRRQLAGQELKNII* |
| Coding | >Pro_DTO377G3_2|g1491.t1 ATGAAACTCCTCTACCCAACCTCCCTCTACATTGACGCGAAGTCCCTAGAAGGCTTCTCCGTCGAATTGCATCCC TACGACGTCACAGTCCCAATTCCCGAATCCCTAATCGACGCCGAGTTCCTAGTAACATGGGCCAACAAAGCCACG AACCTCCGCGACGCAGCCTCCCGCATGAAGAACCTCCGCTGGATCCAGTCGCTAGCAGCCGGACCAAACGACGTC CTCGGTGCGGGCTTCGACGCCTCCCGAATCGCTATCACAACCGGCTCCGGCCTGCATGACGAGACAGTCGCCGAA CACACCCTCGGCCTGCTACTTAATGCTGTCCGCCGCTTCTATGAAATGCGCGACTACCAGAACCGCGGCGAGTGG CCCGCCCACCTGGGCGGCCCCCAGCCCGATCGCGCCCCCGGCACGTTCCGCACCCTCAAGGGTGCTAATATTACC ATCTGGGGATTCGGAAATATCGCCAAGTCTCTCTCGCCCGTGCTGACCGCGCTCGGGGCTAATGTCACCGGTGTT GCGCGGAGTACTGGTGTGCGGAATGGGTTCGAGGTTGTTGCGGAGGATCGCTTGCAGGAGATTCTCCCCAAGACT GATGCGCTTGTTATGATTCTGCCTGGATCGGCGAGTACCAATGGTGCGCTTAATGCTGAGCGCTTGGCTTTGCTG CCGAGTCATGCTTGGGTTGTTAATGTTGGCCGGGGAACTTCCGTTGATGAGGATGCGCTGCTTGCGGCGCTTGAA AAGGGCAGCATTGGCGGCGCGGCGCTGGATGTTTTCTCCGTTGAGCCGCTCCCGAAGGAGTCTAAGCTTTATGCC GCGCCTAATCTTATTCTTTCGCCTCATGCTGCCGGTGGACGTCCGCGTGGGGCTGAGGCGCTTATTGCGTTTAAC CTGAGACGGCAGCTTGCTGGGCAGGAGCTGAAGAATATTATTTGA |
| Transcript | >Pro_DTO377G3_2|g1491.t1 ATGAAACTCCTCTACCCAACCTCCCTCTACATTGACGCGAAGTCCCTAGAAGGCTTCTCCGTCGAATTGCATCCC TACGACGTCACAGTCCCAATTCCCGAATCCCTAATCGACGCCGAGTTCCTAGTAACATGGGCCAACAAAGCCACG AACCTCCGCGACGCAGCCTCCCGCATGAAGAACCTCCGCTGGATCCAGTCGCTAGCAGCCGGACCAAACGACGTC CTCGGTGCGGGCTTCGACGCCTCCCGAATCGCTATCACAACCGGCTCCGGCCTGCATGACGAGACAGTCGCCGAA CACACCCTCGGCCTGCTACTTAATGCTGTCCGCCGCTTCTATGAAATGCGCGACTACCAGAACCGCGGCGAGTGG CCCGCCCACCTGGGCGGCCCCCAGCCCGATCGCGCCCCCGGCACGTTCCGCACCCTCAAGGGTGCTAATATTACC ATCTGGGGATTCGGAAATATCGCCAAGTCTCTCTCGCCCGTGCTGACCGCGCTCGGGGCTAATGTCACCGGTGTT GCGCGGAGTACTGGTGTGCGGAATGGGTTCGAGGTTGTTGCGGAGGATCGCTTGCAGGAGATTCTCCCCAAGACT GATGCGCTTGTTATGATTCTGCCTGGATCGGCGAGTACCAATGGTGCGCTTAATGCTGAGCGCTTGGCTTTGCTG CCGAGTCATGCTTGGGTTGTTAATGTTGGCCGGGGAACTTCCGTTGATGAGGATGCGCTGCTTGCGGCGCTTGAA AAGGGCAGCATTGGCGGCGCGGCGCTGGATGTTTTCTCCGTTGAGCCGCTCCCGAAGGAGTCTAAGCTTTATGCC GCGCCTAATCTTATTCTTTCGCCTCATGCTGCCGGTGGACGTCCGCGTGGGGCTGAGGCGCTTATTGCGTTTAAC CTGAGACGGCAGCTTGCTGGGCAGGAGCTGAAGAATATTATTTGA |
| Gene | >Pro_DTO377G3_2|g1491.t1 ATGAAACTCCTCTACCCAACCTCCCTCTACATTGACGCGAAGTCCCTAGAAGGCTTCTCCGTCGAATTGCATCCC TACGACGTCACAGTCCCAATTCCCGAATCCCTAATCGACGCCGAGTTCCTAGTAACATGGGCCAACAAAGCCACG AACCTCCGCGACGCAGCCTCCCGCATGAAGAACCTCCGCTGGATCCAGTCGCTAGCAGCCGGACCAAACGACGTC CTCGGTGCGGGCTTCGACGCCTCCCGAATCGCTATCACAACCGGCTCCGGCCTGCATGACGAGACAGTCGCCGAA CACACCCTCGGCCTGCTACTTAATGCTGTCCGCCGCTTCTATGAAATGCGCGACTACCAGAACCGCGGCGAGTGG CCCGCCCACCTGGGCGGCCCCCAGCCCGATCGCGCCCCCGGCACGTTCCGCACCCTCAAGGGTGCTAATATTACC ATCTGGGGATTCGGAAATATCGCCAAGTCTCTCTCGCCCGTGCTGACCGCGCTCGGGGCTAATGTCACCGGTGTT GCGCGGAGTACTGGTGTGCGGAATGGGTTCGAGGTTGTTGCGGAGGATCGCTTGCAGGAGATTCTCCCCAAGACT GATGCGCTTGTTATGATTCTGCCTGGATCGGCGAGTACCAATGGTGCGCTTAATGCTGAGCGCTTGGCTTTGCTG CCGAGTCATGCTTGGGTTGTTAATGTTGGCCGGGGAACTTCCGTTGATGAGGATGCGCTGCTTGCGGCGCTTGAA AAGGGCAGCATTGGCGGCGCGGCGCTGGATGTTTTCTCCGTTGAGCCGCTCCCGAAGGAGTCTAAGCTTTATGCC GCGCCTAATCTTATTCTTTCGCCTCATGCTGCCGGTGGACGTCCGCGTGGGGCTGAGGCGCTTATTGCGTTTAAC CTGAGACGGCAGCTTGCTGGGCAGGAGCTGAAGAATATTATTTGA |