© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1484.t1 |
| Gene name | |
| Location | scaffold_02:104101..105555 |
| Strand | - |
| Gene length (bp) | 1454 |
| Transcript length (bp) | 1389 |
| Coding sequence length (bp) | 1389 |
| Protein length (aa) | 463 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13450 | NAD_binding_8 | NAD(P)-binding Rossmann-like domain | 9.4E-16 | 12 | 89 |
| PF01593 | Amino_oxidase | Flavin containing amine oxidoreductase | 3.0E-07 | 154 | 308 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 24 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 9 | 26 | 17 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 28.06 | 15.22 | 40.89 |
| 5d_25C | Five days - 25 degrees Celsius | 32.73 | 18.28 | 47.18 |
| 7d_25C | Seven days - 25 degrees Celsius | 36.43 | 20.69 | 52.17 |
| 10d_25C | Ten days - 25 degrees Celsius | 32.76 | 18.23 | 47.29 |
| 7d_15C | Seven days - 15 degrees Celsius | 46.11 | 27.06 | 65.17 |
| 7d_30C | Seven days - 30 degrees Celsius | 34.16 | 19.20 | 49.13 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.624817 | no |
| 3d_25C | 7d_25C | 0.343208 | no |
| 3d_25C | 7d_15C | 0.031312 | yes |
| 3d_25C | 7d_30C | 0.509106 | no |
| 3d_25C | 10d_25C | 0.623868 | no |
| 5d_25C | 7d_25C | 0.736924 | no |
| 5d_25C | 7d_15C | 0.153388 | no |
| 5d_25C | 7d_30C | 0.910248 | no |
| 5d_25C | 10d_25C | 0.997963 | no |
| 7d_25C | 7d_15C | 0.356149 | no |
| 7d_25C | 7d_30C | 0.853868 | no |
| 7d_25C | 10d_25C | 0.735909 | no |
| 7d_15C | 7d_30C | 0.223806 | no |
| 7d_15C | 10d_25C | 0.152787 | no |
| 7d_30C | 10d_25C | 0.913002 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1484.t1 MQAKEPHKNVAVVGTGMAGLVVAYMLRSDPQGRFDVEVFEKQEKLSLDSASYNLTTQNGGSAKTQRLDLPMRTFA DGYYESLKRMYDYFGIPYGSLRFIYSLSTLPNNPTKQTSPYFMHSSNNHQIPPLRPEGLSWTGWLLEICYLAICY YWFKVCCFFVAPKTLESSGTEESLRQYLDRIMLPSYYVKHYFLPVFASVATCSHDELMDFPALDLVGYGRRTFRK NHYTVLGGVQHVEQKLSEDLTYKLGAKVTAVENIGTKVQVSWTNTQDGQSSSRLFDHVILAVTPDVVGAIFQPLR SAMKAVPTTTVQSVVHRDFSGIGDSSKSLWSQVSLNRGESPPHPLHMCSNATATETIHEHPSAALITTYPISPID PDKVFYTATFTRVLRSSTSRQIINEIFSQKKFGDDKSQFWRNGDGNVWLVGGWCWDGMVLLEGCLASATRVANAL DVEVPWMKDSSL* |
| Coding | >Pro_DTO377G3_2|g1484.t1 ATGCAGGCGAAGGAACCACACAAAAATGTTGCCGTAGTTGGCACGGGAATGGCCGGGTTAGTGGTCGCATACATG CTCAGGAGCGATCCTCAAGGGAGATTCGACGTGGAAGTTTTCGAAAAGCAAGAGAAACTTTCGCTCGATTCCGCA TCATACAATCTCACAACCCAAAATGGCGGAAGCGCAAAGACCCAACGCCTCGATCTTCCCATGCGCACATTCGCC GACGGATACTACGAAAGTCTCAAGCGAATGTATGATTATTTCGGTATCCCATACGGCTCGCTACGGTTTATTTAC TCCCTGTCGACACTACCGAACAACCCCACGAAACAAACCTCCCCATACTTCATGCATTCCTCAAATAACCACCAA ATACCTCCCCTGCGCCCGGAGGGCTTATCATGGACCGGGTGGCTGCTCGAGATTTGCTACCTGGCAATATGCTAT TATTGGTTCAAAGTCTGCTGTTTCTTTGTAGCGCCCAAGACTCTGGAGTCGTCTGGCACGGAGGAGTCTCTGCGT CAATATTTGGATAGGATTATGTTGCCCAGTTACTACGTGAAGCACTACTTCCTGCCGGTCTTCGCGAGCGTTGCG ACTTGCTCACACGACGAGTTAATGGATTTCCCGGCTCTTGATCTGGTCGGTTATGGGAGACGAACGTTCCGTAAG AACCACTACACTGTTCTTGGTGGAGTCCAGCATGTCGAGCAGAAGCTGTCCGAAGACTTGACGTATAAACTTGGC GCGAAGGTTACGGCAGTCGAGAACATCGGCACAAAAGTTCAAGTGAGCTGGACAAATACCCAGGATGGCCAGAGC AGCTCACGGCTATTTGACCATGTCATTCTGGCTGTGACGCCTGATGTGGTTGGCGCGATTTTCCAGCCTCTCCGA AGCGCAATGAAGGCCGTCCCCACTACGACCGTTCAATCCGTTGTGCACCGTGACTTTTCCGGGATTGGTGATTCT AGCAAATCCCTCTGGTCGCAAGTTTCCTTGAATCGCGGCGAATCACCACCTCACCCACTCCACATGTGCTCAAAT GCTACAGCGACGGAGACGATCCATGAACATCCGTCAGCCGCTCTTATTACGACTTATCCCATTTCTCCGATTGAC CCCGATAAGGTCTTTTACACTGCCACATTCACTCGTGTCTTGCGATCGTCCACCAGCAGACAAATCATCAATGAG ATTTTCAGCCAGAAGAAGTTTGGGGATGACAAGAGCCAATTTTGGCGGAATGGAGATGGAAATGTCTGGCTCGTT GGTGGTTGGTGCTGGGACGGGATGGTACTGCTTGAGGGATGTCTCGCTTCCGCGACAAGGGTCGCAAACGCCCTT GATGTCGAGGTGCCCTGGATGAAAGACTCTTCTTTATAA |
| Transcript | >Pro_DTO377G3_2|g1484.t1 ATGCAGGCGAAGGAACCACACAAAAATGTTGCCGTAGTTGGCACGGGAATGGCCGGGTTAGTGGTCGCATACATG CTCAGGAGCGATCCTCAAGGGAGATTCGACGTGGAAGTTTTCGAAAAGCAAGAGAAACTTTCGCTCGATTCCGCA TCATACAATCTCACAACCCAAAATGGCGGAAGCGCAAAGACCCAACGCCTCGATCTTCCCATGCGCACATTCGCC GACGGATACTACGAAAGTCTCAAGCGAATGTATGATTATTTCGGTATCCCATACGGCTCGCTACGGTTTATTTAC TCCCTGTCGACACTACCGAACAACCCCACGAAACAAACCTCCCCATACTTCATGCATTCCTCAAATAACCACCAA ATACCTCCCCTGCGCCCGGAGGGCTTATCATGGACCGGGTGGCTGCTCGAGATTTGCTACCTGGCAATATGCTAT TATTGGTTCAAAGTCTGCTGTTTCTTTGTAGCGCCCAAGACTCTGGAGTCGTCTGGCACGGAGGAGTCTCTGCGT CAATATTTGGATAGGATTATGTTGCCCAGTTACTACGTGAAGCACTACTTCCTGCCGGTCTTCGCGAGCGTTGCG ACTTGCTCACACGACGAGTTAATGGATTTCCCGGCTCTTGATCTGGTCGGTTATGGGAGACGAACGTTCCGTAAG AACCACTACACTGTTCTTGGTGGAGTCCAGCATGTCGAGCAGAAGCTGTCCGAAGACTTGACGTATAAACTTGGC GCGAAGGTTACGGCAGTCGAGAACATCGGCACAAAAGTTCAAGTGAGCTGGACAAATACCCAGGATGGCCAGAGC AGCTCACGGCTATTTGACCATGTCATTCTGGCTGTGACGCCTGATGTGGTTGGCGCGATTTTCCAGCCTCTCCGA AGCGCAATGAAGGCCGTCCCCACTACGACCGTTCAATCCGTTGTGCACCGTGACTTTTCCGGGATTGGTGATTCT AGCAAATCCCTCTGGTCGCAAGTTTCCTTGAATCGCGGCGAATCACCACCTCACCCACTCCACATGTGCTCAAAT GCTACAGCGACGGAGACGATCCATGAACATCCGTCAGCCGCTCTTATTACGACTTATCCCATTTCTCCGATTGAC CCCGATAAGGTCTTTTACACTGCCACATTCACTCGTGTCTTGCGATCGTCCACCAGCAGACAAATCATCAATGAG ATTTTCAGCCAGAAGAAGTTTGGGGATGACAAGAGCCAATTTTGGCGGAATGGAGATGGAAATGTCTGGCTCGTT GGTGGTTGGTGCTGGGACGGGATGGTACTGCTTGAGGGATGTCTCGCTTCCGCGACAAGGGTCGCAAACGCCCTT GATGTCGAGGTGCCCTGGATGAAAGACTCTTCTTTATAA |
| Gene | >Pro_DTO377G3_2|g1484.t1 ATGCAGGCGAAGGAACCACACAAAAATGTTGCCGTAGTTGGCACGGGAATGGCCGGGTTAGTGGTCGCATACATG CTCAGGAGCGATCCTCAAGGGAGATTCGACGTGGAAGTTTTCGAAAAGGTACAAACTTTCGCATCCGTGACGTCG CTCGCGCGAACTAAAGTTAATCCCAACAAAAAACACAGCAAGAGAAACTTTCGCTCGATTCCGCATCATACAATC TCACAACCCAAAATGGCGGAAGCGCAAAGACCCAACGCCTCGATCTTCCCATGCGCACATTCGCCGACGGATACT ACGAAAGTCTCAAGCGAATGTATGATTATTTCGGTATCCCATACGGCTCGCTACGGTTTATTTACTCCCTGTCGA CACTACCGAACAACCCCACGAAACAAACCTCCCCATACTTCATGCATTCCTCAAATAACCACCAAATACCTCCCC TGCGCCCGGAGGGCTTATCATGGACCGGGTGGCTGCTCGAGATTTGCTACCTGGCAATATGCTATTATTGGTTCA AAGTCTGCTGTTTCTTTGTAGCGCCCAAGACTCTGGAGTCGTCTGGCACGGAGGAGTCTCTGCGTCAATATTTGG ATAGGATTATGTTGCCCAGTTACTACGTGAAGCACTACTTCCTGCCGGTCTTCGCGAGCGTTGCGACTTGCTCAC ACGACGAGTTAATGGATTTCCCGGCTCTTGATCTGGTCGGTTATGGGAGACGAACGTTCCGTAAGAACCACTACA CTGTTCTTGGTGGAGTCCAGCATGTCGAGCAGAAGCTGTCCGAAGACTTGACGTATAAACTTGGCGCGAAGGTTA CGGCAGTCGAGAACATCGGCACAAAAGTTCAAGTGAGCTGGACAAATACCCAGGATGGCCAGAGCAGCTCACGGC TATTTGACCATGTCATTCTGGCTGTGACGCCTGATGTGGTTGGCGCGATTTTCCAGCCTCTCCGAAGCGCAATGA AGGCCGTCCCCACTACGACCGTTCAATCCGTTGTGCACCGTGACTTTTCCGGGATTGGTGATTCTAGCAAATCCC TCTGGTCGCAAGTTTCCTTGAATCGCGGCGAATCACCACCTCACCCACTCCACATGTGCTCAAATGCTACAGCGA CGGAGACGATCCATGAACATCCGTCAGCCGCTCTTATTACGACTTATCCCATTTCTCCGATTGACCCCGATAAGG TCTTTTACACTGCCACATTCACTCGTGTCTTGCGATCGTCCACCAGCAGACAAATCATCAATGAGATTTTCAGCC AGAAGAAGTTTGGGGATGACAAGAGCCAATTTTGGCGGAATGGAGATGGAAATGTCTGGCTCGTTGGTGGTTGGT GCTGGGACGGGATGGTACTGCTTGAGGGATGTCTCGCTTCCGCGACAAGGGTCGCAAACGCCCTTGATGTCGAGG TGCCCTGGATGAAAGACTCTTCTTTATAA |