© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1478.t1 |
| Gene name | |
| Location | scaffold_02:73814..75132 |
| Strand | + |
| Gene length (bp) | 1318 |
| Transcript length (bp) | 1059 |
| Coding sequence length (bp) | 1059 |
| Protein length (aa) | 353 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 20 | 39 | 19 |
| 2 | 52 | 74 | 22 |
| 3 | 89 | 111 | 22 |
| 4 | 130 | 152 | 22 |
| 5 | 180 | 202 | 22 |
| 6 | 214 | 236 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 4.28 | 1.03 | 7.53 |
| 5d_25C | Five days - 25 degrees Celsius | 10.27 | 3.76 | 16.78 |
| 7d_25C | Seven days - 25 degrees Celsius | 11.42 | 4.45 | 18.39 |
| 10d_25C | Ten days - 25 degrees Celsius | 16.85 | 7.36 | 26.34 |
| 7d_15C | Seven days - 15 degrees Celsius | 6.74 | 2.09 | 11.39 |
| 7d_30C | Seven days - 30 degrees Celsius | 13.11 | 5.31 | 20.91 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.018838 | yes |
| 3d_25C | 7d_25C | 0.009124 | yes |
| 3d_25C | 7d_15C | 0.281482 | no |
| 3d_25C | 7d_30C | 0.002761 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.830959 | no |
| 5d_25C | 7d_15C | 0.287707 | no |
| 5d_25C | 7d_30C | 0.552931 | no |
| 5d_25C | 10d_25C | 0.152550 | no |
| 7d_25C | 7d_15C | 0.146078 | no |
| 7d_25C | 7d_30C | 0.752877 | no |
| 7d_25C | 10d_25C | 0.263090 | no |
| 7d_15C | 7d_30C | 0.052372 | no |
| 7d_15C | 10d_25C | 0.004840 | yes |
| 7d_30C | 10d_25C | 0.505395 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1478.t1 MSSSGGASLLPESQAPTVKGVMWTMSMVPLVFVFLRLYVRVYMRRVFGWDDGIAIAAIGCLIGYAAVSHVAANLG LGQHLEIVQKNPDNLIQVALLCNIGESLAIIACTLGKTSFAVTLLRIVVRRWMVILLWFVIVTMNIVNILAALFV FLQCKDPRHLWNPMIPSECWPSHIFTHFSLFVGAYSGAQDFVLALLPWTIVWNLQMKKKEKLGVVVAMSLGIFAG AASIVKTIHLVALSAKSDFTWELAPLLIWAAVEDGLAITAASIPALKPLLTRMFPSTSADSYNMIAYPKQPPSRK IFDNSQGETQTDIGHTSVHDTGSQTAILEPIVPKGENINMITEVSVTYNHGS* |
| Coding | >Pro_DTO377G3_2|g1478.t1 ATGTCGTCTAGCGGGGGTGCATCTCTCCTACCGGAGAGCCAGGCTCCTACAGTGAAGGGTGTGATGTGGACGATG TCGATGGTTCCTTTGGTCTTCGTTTTCCTGCGCTTGTATGTGCGAGTATACATGCGGAGAGTGTTTGGCTGGGAT GACGGCATTGCAATCGCGGCAATTGGTTGTCTGATTGGATACGCTGCTGTCTCCCATGTCGCTGCAAACCTGGGA TTAGGGCAACACCTTGAAATTGTCCAGAAAAACCCCGATAACCTCATCCAGGTGGCGCTCTTATGCAACATTGGC GAATCTCTGGCAATCATTGCATGCACCCTCGGCAAGACGTCCTTTGCTGTCACATTGCTTCGGATCGTGGTCCGC AGATGGATGGTTATTTTGCTATGGTTCGTGATTGTTACAATGAACATTGTCAACATCTTGGCTGCGCTCTTTGTC TTCCTGCAATGCAAAGATCCTCGGCATCTGTGGAATCCGATGATCCCATCGGAGTGTTGGCCGTCGCATATCTTT ACGCATTTCTCTCTCTTTGTTGGTGCTTATTCTGGAGCACAAGATTTCGTCCTAGCCCTGCTACCATGGACGATT GTGTGGAATTTGCAAATGAAGAAGAAGGAAAAGCTTGGTGTGGTCGTTGCAATGAGTCTTGGAATCTTTGCAGGC GCAGCATCCATAGTCAAGACCATCCACCTCGTGGCCCTCTCAGCCAAATCCGACTTCACATGGGAACTCGCTCCC TTATTAATCTGGGCAGCAGTTGAAGACGGTCTCGCTATCACCGCTGCATCTATTCCCGCGCTTAAGCCTCTCTTG ACAAGGATGTTCCCCAGCACATCAGCGGACAGTTATAACATGATCGCGTATCCAAAACAGCCCCCCAGCCGCAAG ATATTCGACAACTCCCAGGGCGAAACGCAGACGGATATTGGACACACGAGTGTTCATGACACGGGAAGTCAAACA GCGATCCTAGAGCCTATCGTTCCAAAGGGCGAAAATATCAATATGATAACCGAGGTGTCGGTGACCTATAATCAC GGCTCGTGA |
| Transcript | >Pro_DTO377G3_2|g1478.t1 ATGTCGTCTAGCGGGGGTGCATCTCTCCTACCGGAGAGCCAGGCTCCTACAGTGAAGGGTGTGATGTGGACGATG TCGATGGTTCCTTTGGTCTTCGTTTTCCTGCGCTTGTATGTGCGAGTATACATGCGGAGAGTGTTTGGCTGGGAT GACGGCATTGCAATCGCGGCAATTGGTTGTCTGATTGGATACGCTGCTGTCTCCCATGTCGCTGCAAACCTGGGA TTAGGGCAACACCTTGAAATTGTCCAGAAAAACCCCGATAACCTCATCCAGGTGGCGCTCTTATGCAACATTGGC GAATCTCTGGCAATCATTGCATGCACCCTCGGCAAGACGTCCTTTGCTGTCACATTGCTTCGGATCGTGGTCCGC AGATGGATGGTTATTTTGCTATGGTTCGTGATTGTTACAATGAACATTGTCAACATCTTGGCTGCGCTCTTTGTC TTCCTGCAATGCAAAGATCCTCGGCATCTGTGGAATCCGATGATCCCATCGGAGTGTTGGCCGTCGCATATCTTT ACGCATTTCTCTCTCTTTGTTGGTGCTTATTCTGGAGCACAAGATTTCGTCCTAGCCCTGCTACCATGGACGATT GTGTGGAATTTGCAAATGAAGAAGAAGGAAAAGCTTGGTGTGGTCGTTGCAATGAGTCTTGGAATCTTTGCAGGC GCAGCATCCATAGTCAAGACCATCCACCTCGTGGCCCTCTCAGCCAAATCCGACTTCACATGGGAACTCGCTCCC TTATTAATCTGGGCAGCAGTTGAAGACGGTCTCGCTATCACCGCTGCATCTATTCCCGCGCTTAAGCCTCTCTTG ACAAGGATGTTCCCCAGCACATCAGCGGACAGTTATAACATGATCGCGTATCCAAAACAGCCCCCCAGCCGCAAG ATATTCGACAACTCCCAGGGCGAAACGCAGACGGATATTGGACACACGAGTGTTCATGACACGGGAAGTCAAACA GCGATCCTAGAGCCTATCGTTCCAAAGGGCGAAAATATCAATATGATAACCGAGGTGTCGGTGACCTATAATCAC GGCTCGTGA |
| Gene | >Pro_DTO377G3_2|g1478.t1 ATGTCGTCTAGCGGGGGTGCATCTCTCCTACCGGAGAGCCAGGCTCCTACAGTGAAGGGTGTGATGTGGACGATG TCGATGGTTCCTTTGGTCTTCGTTTTCCTGCGCTTGTATGTGCGAGTATACATGCGGAGAGTGTTTGGCTGGGAT GACGGCATTGCAATCGCGGCAATTGTAAGGGACTCCTTTTCGTGACTGACTGACTTGGATGATCTTGCTAACTTC AATTCCCTTGGTAGGGTTGTCTGATTGGATACGCTGCTGTCTCCCATGTCGCTGCAAACCTGGGATTAGGGCAAC ACCTTGAAATTGTCCAGAAAAACCCCGATAACCTCATCCAGGTGGCGCTCTTATGCAACATTGGCGAATCTCTGG CAATCATTGCATGCACCCTCGGCAAGACGTCCTTTGCTGTCACATTGCTTCGGATCGTGGTCCGCAGATGGATGG TTATTTTGCTATGGTTCGTGATTGTTACAATGAACATTGTCAACATCTTGGCTGCGCTCTTTGTCTTCCTGCAAT GCAAAGATCCTCGGCATCTGTGGAATCCGATGATCCCATCGGAGTGTTGGCCGTCGCATATCTTTACGCATTTCT CTCTCTTTGTTGGTGGTGAGTCTGCTCGCAGAAGTCTGCTTTGGTTGTGATTGACGACTAACACGTAAACTCCCT CAGCTTATTCTGGAGCACAAGATTTCGTCCTAGCCCTGCTACCATGGACGATTGTGTGGAATTTGCAAATGAAGA AGAAGGAAAAGCTTGGTGTGGTCGTTGCAATGAGTCTTGGAATCTTGTAAGTCCTTGGGCGGAAGCCCTTGCAAA CCTCGAACCGTCCCACATGCTGATTGACTTATCTCTTCAAGTGCAGGCGCAGCATCCATAGTCAAGACCATCCAC CTCGTGGCCCTCTCAGCCAAATCCGACTTCACATGTACGCCACCATTGTTACCTTCTTCGTCTCTTGTCAGGACT AATTTGCTTTCTTTGCTTAGGGGAACTCGCTCCCTTATTAATCTGGGCAGCAGTTGAAGACGGTCTCGCTATCAC CGCTGCATCTATTCCCGCGCTTAAGCCTCTCTTGACAAGGATGTTCCCCAGCACATCAGCGGACAGTTATAACAT GATCGCGTATCCAAAACAGCCCCCCAGCCGCAAGATATTCGACAACTCCCAGGGCGAAACGCAGACGGATATTGG ACACACGAGTGTTCATGACACGGGAAGTCAAACAGCGATCCTAGAGCCTATCGTTCCAAAGGGCGAAAATATCAA TATGATAACCGAGGTGTCGGTGACCTATAATCACGGCTCGTGA |