Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g1478.t1
Gene name
Locationscaffold_02:73814..75132
Strand+
Gene length (bp)1318
Transcript length (bp)1059
Coding sequence length (bp)1059
Protein length (aa) 353

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PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 21 0.5

Transmembrane Domains

Domain # Start End Length
1 20 39 19
2 52 74 22
3 89 111 22
4 130 152 22
5 180 202 22
6 214 236 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 4.28 1.03 7.53
5d_25C Five days - 25 degrees Celsius 10.27 3.76 16.78
7d_25C Seven days - 25 degrees Celsius 11.42 4.45 18.39
10d_25C Ten days - 25 degrees Celsius 16.85 7.36 26.34
7d_15C Seven days - 15 degrees Celsius 6.74 2.09 11.39
7d_30C Seven days - 30 degrees Celsius 13.11 5.31 20.91

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.018838 yes
3d_25C 7d_25C 0.009124 yes
3d_25C 7d_15C 0.281482 no
3d_25C 7d_30C 0.002761 yes
3d_25C 10d_25C 0.000700 yes
5d_25C 7d_25C 0.830959 no
5d_25C 7d_15C 0.287707 no
5d_25C 7d_30C 0.552931 no
5d_25C 10d_25C 0.152550 no
7d_25C 7d_15C 0.146078 no
7d_25C 7d_30C 0.752877 no
7d_25C 10d_25C 0.263090 no
7d_15C 7d_30C 0.052372 no
7d_15C 10d_25C 0.004840 yes
7d_30C 10d_25C 0.505395 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g1478.t1
MSSSGGASLLPESQAPTVKGVMWTMSMVPLVFVFLRLYVRVYMRRVFGWDDGIAIAAIGCLIGYAAVSHVAANLG
LGQHLEIVQKNPDNLIQVALLCNIGESLAIIACTLGKTSFAVTLLRIVVRRWMVILLWFVIVTMNIVNILAALFV
FLQCKDPRHLWNPMIPSECWPSHIFTHFSLFVGAYSGAQDFVLALLPWTIVWNLQMKKKEKLGVVVAMSLGIFAG
AASIVKTIHLVALSAKSDFTWELAPLLIWAAVEDGLAITAASIPALKPLLTRMFPSTSADSYNMIAYPKQPPSRK
IFDNSQGETQTDIGHTSVHDTGSQTAILEPIVPKGENINMITEVSVTYNHGS*
Coding >Pro_DTO377G3_2|g1478.t1
ATGTCGTCTAGCGGGGGTGCATCTCTCCTACCGGAGAGCCAGGCTCCTACAGTGAAGGGTGTGATGTGGACGATG
TCGATGGTTCCTTTGGTCTTCGTTTTCCTGCGCTTGTATGTGCGAGTATACATGCGGAGAGTGTTTGGCTGGGAT
GACGGCATTGCAATCGCGGCAATTGGTTGTCTGATTGGATACGCTGCTGTCTCCCATGTCGCTGCAAACCTGGGA
TTAGGGCAACACCTTGAAATTGTCCAGAAAAACCCCGATAACCTCATCCAGGTGGCGCTCTTATGCAACATTGGC
GAATCTCTGGCAATCATTGCATGCACCCTCGGCAAGACGTCCTTTGCTGTCACATTGCTTCGGATCGTGGTCCGC
AGATGGATGGTTATTTTGCTATGGTTCGTGATTGTTACAATGAACATTGTCAACATCTTGGCTGCGCTCTTTGTC
TTCCTGCAATGCAAAGATCCTCGGCATCTGTGGAATCCGATGATCCCATCGGAGTGTTGGCCGTCGCATATCTTT
ACGCATTTCTCTCTCTTTGTTGGTGCTTATTCTGGAGCACAAGATTTCGTCCTAGCCCTGCTACCATGGACGATT
GTGTGGAATTTGCAAATGAAGAAGAAGGAAAAGCTTGGTGTGGTCGTTGCAATGAGTCTTGGAATCTTTGCAGGC
GCAGCATCCATAGTCAAGACCATCCACCTCGTGGCCCTCTCAGCCAAATCCGACTTCACATGGGAACTCGCTCCC
TTATTAATCTGGGCAGCAGTTGAAGACGGTCTCGCTATCACCGCTGCATCTATTCCCGCGCTTAAGCCTCTCTTG
ACAAGGATGTTCCCCAGCACATCAGCGGACAGTTATAACATGATCGCGTATCCAAAACAGCCCCCCAGCCGCAAG
ATATTCGACAACTCCCAGGGCGAAACGCAGACGGATATTGGACACACGAGTGTTCATGACACGGGAAGTCAAACA
GCGATCCTAGAGCCTATCGTTCCAAAGGGCGAAAATATCAATATGATAACCGAGGTGTCGGTGACCTATAATCAC
GGCTCGTGA
Transcript >Pro_DTO377G3_2|g1478.t1
ATGTCGTCTAGCGGGGGTGCATCTCTCCTACCGGAGAGCCAGGCTCCTACAGTGAAGGGTGTGATGTGGACGATG
TCGATGGTTCCTTTGGTCTTCGTTTTCCTGCGCTTGTATGTGCGAGTATACATGCGGAGAGTGTTTGGCTGGGAT
GACGGCATTGCAATCGCGGCAATTGGTTGTCTGATTGGATACGCTGCTGTCTCCCATGTCGCTGCAAACCTGGGA
TTAGGGCAACACCTTGAAATTGTCCAGAAAAACCCCGATAACCTCATCCAGGTGGCGCTCTTATGCAACATTGGC
GAATCTCTGGCAATCATTGCATGCACCCTCGGCAAGACGTCCTTTGCTGTCACATTGCTTCGGATCGTGGTCCGC
AGATGGATGGTTATTTTGCTATGGTTCGTGATTGTTACAATGAACATTGTCAACATCTTGGCTGCGCTCTTTGTC
TTCCTGCAATGCAAAGATCCTCGGCATCTGTGGAATCCGATGATCCCATCGGAGTGTTGGCCGTCGCATATCTTT
ACGCATTTCTCTCTCTTTGTTGGTGCTTATTCTGGAGCACAAGATTTCGTCCTAGCCCTGCTACCATGGACGATT
GTGTGGAATTTGCAAATGAAGAAGAAGGAAAAGCTTGGTGTGGTCGTTGCAATGAGTCTTGGAATCTTTGCAGGC
GCAGCATCCATAGTCAAGACCATCCACCTCGTGGCCCTCTCAGCCAAATCCGACTTCACATGGGAACTCGCTCCC
TTATTAATCTGGGCAGCAGTTGAAGACGGTCTCGCTATCACCGCTGCATCTATTCCCGCGCTTAAGCCTCTCTTG
ACAAGGATGTTCCCCAGCACATCAGCGGACAGTTATAACATGATCGCGTATCCAAAACAGCCCCCCAGCCGCAAG
ATATTCGACAACTCCCAGGGCGAAACGCAGACGGATATTGGACACACGAGTGTTCATGACACGGGAAGTCAAACA
GCGATCCTAGAGCCTATCGTTCCAAAGGGCGAAAATATCAATATGATAACCGAGGTGTCGGTGACCTATAATCAC
GGCTCGTGA
Gene >Pro_DTO377G3_2|g1478.t1
ATGTCGTCTAGCGGGGGTGCATCTCTCCTACCGGAGAGCCAGGCTCCTACAGTGAAGGGTGTGATGTGGACGATG
TCGATGGTTCCTTTGGTCTTCGTTTTCCTGCGCTTGTATGTGCGAGTATACATGCGGAGAGTGTTTGGCTGGGAT
GACGGCATTGCAATCGCGGCAATTGTAAGGGACTCCTTTTCGTGACTGACTGACTTGGATGATCTTGCTAACTTC
AATTCCCTTGGTAGGGTTGTCTGATTGGATACGCTGCTGTCTCCCATGTCGCTGCAAACCTGGGATTAGGGCAAC
ACCTTGAAATTGTCCAGAAAAACCCCGATAACCTCATCCAGGTGGCGCTCTTATGCAACATTGGCGAATCTCTGG
CAATCATTGCATGCACCCTCGGCAAGACGTCCTTTGCTGTCACATTGCTTCGGATCGTGGTCCGCAGATGGATGG
TTATTTTGCTATGGTTCGTGATTGTTACAATGAACATTGTCAACATCTTGGCTGCGCTCTTTGTCTTCCTGCAAT
GCAAAGATCCTCGGCATCTGTGGAATCCGATGATCCCATCGGAGTGTTGGCCGTCGCATATCTTTACGCATTTCT
CTCTCTTTGTTGGTGGTGAGTCTGCTCGCAGAAGTCTGCTTTGGTTGTGATTGACGACTAACACGTAAACTCCCT
CAGCTTATTCTGGAGCACAAGATTTCGTCCTAGCCCTGCTACCATGGACGATTGTGTGGAATTTGCAAATGAAGA
AGAAGGAAAAGCTTGGTGTGGTCGTTGCAATGAGTCTTGGAATCTTGTAAGTCCTTGGGCGGAAGCCCTTGCAAA
CCTCGAACCGTCCCACATGCTGATTGACTTATCTCTTCAAGTGCAGGCGCAGCATCCATAGTCAAGACCATCCAC
CTCGTGGCCCTCTCAGCCAAATCCGACTTCACATGTACGCCACCATTGTTACCTTCTTCGTCTCTTGTCAGGACT
AATTTGCTTTCTTTGCTTAGGGGAACTCGCTCCCTTATTAATCTGGGCAGCAGTTGAAGACGGTCTCGCTATCAC
CGCTGCATCTATTCCCGCGCTTAAGCCTCTCTTGACAAGGATGTTCCCCAGCACATCAGCGGACAGTTATAACAT
GATCGCGTATCCAAAACAGCCCCCCAGCCGCAAGATATTCGACAACTCCCAGGGCGAAACGCAGACGGATATTGG
ACACACGAGTGTTCATGACACGGGAAGTCAAACAGCGATCCTAGAGCCTATCGTTCCAAAGGGCGAAAATATCAA
TATGATAACCGAGGTGTCGGTGACCTATAATCACGGCTCGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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