© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1465.t1 |
| Gene name | |
| Location | scaffold_02:18935..20936 |
| Strand | + |
| Gene length (bp) | 2001 |
| Transcript length (bp) | 1821 |
| Coding sequence length (bp) | 1821 |
| Protein length (aa) | 607 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 75 | 97 | 22 |
| 2 | 107 | 126 | 19 |
| 3 | 138 | 160 | 22 |
| 4 | 229 | 251 | 22 |
| 5 | 292 | 310 | 18 |
| 6 | 330 | 352 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 6.33 | 2.48 | 10.18 |
| 5d_25C | Five days - 25 degrees Celsius | 8.14 | 3.44 | 12.84 |
| 7d_25C | Seven days - 25 degrees Celsius | 13.87 | 6.65 | 21.08 |
| 10d_25C | Ten days - 25 degrees Celsius | 10.59 | 4.85 | 16.33 |
| 7d_15C | Seven days - 15 degrees Celsius | 22.64 | 12.25 | 33.02 |
| 7d_30C | Seven days - 30 degrees Celsius | 25.30 | 13.83 | 36.77 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.515883 | no |
| 3d_25C | 7d_25C | 0.009446 | yes |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.103139 | no |
| 5d_25C | 7d_25C | 0.079853 | no |
| 5d_25C | 7d_15C | 0.000700 | yes |
| 5d_25C | 7d_30C | 0.000700 | yes |
| 5d_25C | 10d_25C | 0.473506 | no |
| 7d_25C | 7d_15C | 0.069248 | no |
| 7d_25C | 7d_30C | 0.019886 | yes |
| 7d_25C | 10d_25C | 0.417860 | no |
| 7d_15C | 7d_30C | 0.751859 | no |
| 7d_15C | 10d_25C | 0.004045 | yes |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1465.t1 MPAIPIVTSFLEQVLVHRATAPPPNVTVSATSASLQVVCAWPISGQYGPGTRVLYYVLIAACVVARKVEWIRNAC LAAVLLFPAIAALHGIVLAALHVDGAVDMDVYGAFQLCAIGILTAPATVRLSRTYFNNPGRNIIFLWTVLLLAGL VSLIVEFMRLKPTTCPDDDPASIFWASTGGKKGGVFKYDSNCSLACTPENGPVSPLRLDAANNIYVIPVPHELTF NATTLIAAACCIPAILSLIFMWIKILDDNWEKFSNGRQKQKPDDFILGTNGATINHMTGITDRISKWLSLIEIPV FAAAVLAILVKGEMNFWSKQMRYQTEPIQSIGQWAPIVGTVLAVLGSLYMLLSADMEAAGQEDDQQEEIIVGKSP NYDSTVSYAGSSSAQDSRTSAERQDSDIEMTTIRRPTTNQTTTTQSQHDLGRRKVARFFNAASAIMTAKAHNQIK KTGFNPEAKTNYPEIPGEIYRNSYLPDHKAHYQRSSTPDNRSRAESFTSRRNSVDNGEGSSGPRSTTRHSVPAPA VSRPKSRQAHSNSLPGGGLFETSTLQCPPATLGGWQRQLSPFDTMSISRSRTPSISEVSPTNSSPGPQFLPEIVV SAHEGS* |
| Coding | >Pro_DTO377G3_2|g1465.t1 ATGCCAGCAATCCCAATTGTTACCTCCTTCCTAGAGCAAGTTCTCGTGCATCGTGCTACTGCACCGCCCCCTAAC GTGACAGTGTCTGCAACTTCCGCATCACTCCAGGTGGTTTGCGCCTGGCCAATATCAGGCCAATATGGACCGGGG ACCCGAGTCCTATACTATGTCTTGATTGCAGCCTGCGTGGTCGCTCGCAAAGTAGAATGGATTCGGAACGCTTGT CTAGCCGCTGTGTTGCTTTTCCCCGCTATCGCCGCTCTTCACGGGATTGTGCTTGCTGCGCTTCATGTTGACGGC GCTGTCGATATGGATGTATATGGAGCATTCCAGCTATGCGCAATTGGAATCTTAACCGCCCCAGCGACCGTCAGG CTTTCCCGGACCTACTTCAACAACCCCGGCCGCAATATCATCTTTCTATGGACAGTCCTTCTCCTGGCTGGGCTA GTAAGCTTGATTGTGGAATTCATGCGCCTCAAGCCCACTACTTGCCCGGATGACGACCCAGCAAGCATTTTCTGG GCCTCAACTGGGGGCAAAAAGGGCGGTGTGTTTAAGTATGACTCTAACTGTAGCCTTGCTTGTACCCCGGAGAAT GGGCCAGTCTCACCGTTGCGACTTGATGCAGCCAACAATATATACGTGATTCCAGTCCCCCACGAGCTGACGTTC AATGCTACTACGCTAATTGCGGCTGCATGCTGCATCCCTGCCATCCTGTCGTTAATATTTATGTGGATCAAAATC TTGGACGACAATTGGGAGAAGTTCTCAAATGGAAGACAGAAGCAGAAGCCAGATGATTTCATTCTGGGAACCAAC GGAGCTACCATCAACCACATGACTGGGATCACCGACAGGATAAGCAAATGGCTATCTCTCATCGAGATACCGGTG TTTGCTGCAGCAGTGCTGGCAATCCTCGTCAAAGGCGAGATGAATTTTTGGAGTAAGCAAATGAGGTACCAAACA GAGCCTATACAAAGCATTGGTCAATGGGCGCCAATCGTTGGTACAGTACTCGCTGTATTGGGATCACTATATATG CTCCTTTCTGCGGATATGGAAGCCGCGGGACAAGAAGATGACCAACAAGAAGAGATTATCGTTGGAAAATCCCCA AACTACGACAGCACTGTTTCATACGCCGGAAGCAGTTCCGCGCAAGATTCTAGAACAAGTGCCGAGAGACAGGAC TCGGATATCGAAATGACAACTATACGCCGCCCTACTACCAATCAAACCACCACCACTCAATCCCAGCACGACTTA GGAAGACGAAAGGTCGCCCGCTTCTTTAATGCAGCAAGCGCCATCATGACCGCCAAAGCCCACAATCAAATCAAG AAGACGGGTTTCAATCCCGAAGCAAAAACAAATTACCCCGAGATCCCAGGAGAAATATACAGAAACTCATATCTC CCTGATCATAAAGCCCATTACCAAAGGTCATCTACACCCGATAACCGATCAAGAGCTGAAAGTTTCACAAGTCGC AGGAACTCTGTGGATAATGGCGAAGGCAGCTCTGGGCCCCGGAGTACAACACGTCATTCTGTGCCTGCTCCAGCT GTCTCGCGGCCAAAATCACGCCAAGCTCACTCAAATTCGCTCCCGGGTGGGGGGTTATTTGAGACATCGACCCTG CAGTGTCCTCCAGCCACACTTGGAGGGTGGCAGCGACAATTGAGTCCCTTCGATACAATGTCGATCTCACGAAGT AGAACACCGTCTATTTCCGAGGTCAGCCCCACAAATTCATCGCCGGGACCTCAGTTCCTGCCGGAGATAGTAGTT TCTGCCCATGAAGGTAGTTGA |
| Transcript | >Pro_DTO377G3_2|g1465.t1 ATGCCAGCAATCCCAATTGTTACCTCCTTCCTAGAGCAAGTTCTCGTGCATCGTGCTACTGCACCGCCCCCTAAC GTGACAGTGTCTGCAACTTCCGCATCACTCCAGGTGGTTTGCGCCTGGCCAATATCAGGCCAATATGGACCGGGG ACCCGAGTCCTATACTATGTCTTGATTGCAGCCTGCGTGGTCGCTCGCAAAGTAGAATGGATTCGGAACGCTTGT CTAGCCGCTGTGTTGCTTTTCCCCGCTATCGCCGCTCTTCACGGGATTGTGCTTGCTGCGCTTCATGTTGACGGC GCTGTCGATATGGATGTATATGGAGCATTCCAGCTATGCGCAATTGGAATCTTAACCGCCCCAGCGACCGTCAGG CTTTCCCGGACCTACTTCAACAACCCCGGCCGCAATATCATCTTTCTATGGACAGTCCTTCTCCTGGCTGGGCTA GTAAGCTTGATTGTGGAATTCATGCGCCTCAAGCCCACTACTTGCCCGGATGACGACCCAGCAAGCATTTTCTGG GCCTCAACTGGGGGCAAAAAGGGCGGTGTGTTTAAGTATGACTCTAACTGTAGCCTTGCTTGTACCCCGGAGAAT GGGCCAGTCTCACCGTTGCGACTTGATGCAGCCAACAATATATACGTGATTCCAGTCCCCCACGAGCTGACGTTC AATGCTACTACGCTAATTGCGGCTGCATGCTGCATCCCTGCCATCCTGTCGTTAATATTTATGTGGATCAAAATC TTGGACGACAATTGGGAGAAGTTCTCAAATGGAAGACAGAAGCAGAAGCCAGATGATTTCATTCTGGGAACCAAC GGAGCTACCATCAACCACATGACTGGGATCACCGACAGGATAAGCAAATGGCTATCTCTCATCGAGATACCGGTG TTTGCTGCAGCAGTGCTGGCAATCCTCGTCAAAGGCGAGATGAATTTTTGGAGTAAGCAAATGAGGTACCAAACA GAGCCTATACAAAGCATTGGTCAATGGGCGCCAATCGTTGGTACAGTACTCGCTGTATTGGGATCACTATATATG CTCCTTTCTGCGGATATGGAAGCCGCGGGACAAGAAGATGACCAACAAGAAGAGATTATCGTTGGAAAATCCCCA AACTACGACAGCACTGTTTCATACGCCGGAAGCAGTTCCGCGCAAGATTCTAGAACAAGTGCCGAGAGACAGGAC TCGGATATCGAAATGACAACTATACGCCGCCCTACTACCAATCAAACCACCACCACTCAATCCCAGCACGACTTA GGAAGACGAAAGGTCGCCCGCTTCTTTAATGCAGCAAGCGCCATCATGACCGCCAAAGCCCACAATCAAATCAAG AAGACGGGTTTCAATCCCGAAGCAAAAACAAATTACCCCGAGATCCCAGGAGAAATATACAGAAACTCATATCTC CCTGATCATAAAGCCCATTACCAAAGGTCATCTACACCCGATAACCGATCAAGAGCTGAAAGTTTCACAAGTCGC AGGAACTCTGTGGATAATGGCGAAGGCAGCTCTGGGCCCCGGAGTACAACACGTCATTCTGTGCCTGCTCCAGCT GTCTCGCGGCCAAAATCACGCCAAGCTCACTCAAATTCGCTCCCGGGTGGGGGGTTATTTGAGACATCGACCCTG CAGTGTCCTCCAGCCACACTTGGAGGGTGGCAGCGACAATTGAGTCCCTTCGATACAATGTCGATCTCACGAAGT AGAACACCGTCTATTTCCGAGGTCAGCCCCACAAATTCATCGCCGGGACCTCAGTTCCTGCCGGAGATAGTAGTT TCTGCCCATGAAGGTAGTTGA |
| Gene | >Pro_DTO377G3_2|g1465.t1 ATGCCAGCAATCCCAATTGTTACCTCCTTCCTAGAGCAAGTTCTCGTGCATCGTGCTACTGCACCGCCCCCTAAC GTGACAGTGTCTGCAACTTCCGCATCACTCCAGGTGGTTTGCGCCTGGCCAATATCAGGCCAATATGGACCGGGG ACCCGAGTCCTGTGGGTTTTCCGATAATGGTGTTGCCATGATATACTAACATTTACTCCAGATACTATGTCTTGA TTGCAGCCTGCGTGGTCGCTCGCAAAGTAGAATGGATTCGGAACGCTTGTCTAGCCGCTGTGTTGCTTTTCCCCG CTATCGCCGCTCTTCACGGGATTGTGCTTGCTGCGCTTCATGTTGACGGTGAGTCTAATGAAACTTTGCCCCGGG TTTCCTCCTGGTGTGACCCAATCTGATACTATATAGGCGCTGTCGATATGGATGTATATGGAGCATTCCAGCTAT GCGCAATTGGAATCTTAACCGCCCCAGCGACCGTCAGGCTTTCCCGGACCTACTTCAACAACCCCGGCCGCAATA TCATCTTTCTATGGACAGTCCTTCTCCTGGCTGGGCTAGTAAGCTTGATTGTGGAATTCATGCGCCTCAAGCCCA CTACTTGCCCGGATGACGACCCAGCAAGCATTTTCTGGGCCTCAACTGGGGGCAAAAAGGGCGGTGTGTTTAAGT ATGACTCTAACTGTAGCCTTGCTTGTACCCCGGAGAATGGGCCAGTCTCACCGTTGCGACTTGATGCAGCCAACA ATATATACGTGATTCCAGTCCCCCACGAGCTGACGTTCAATGCTACTACGCTAATTGCGGCTGCATGCTGCATCC CTGCCATCCTGTCGTTAATATTTATGTGGATCAAAATCTTGGACGACAATTGGGAGAAGTTCTCAAATGGAAGAC AGAAGCAGAAGCCAGATGATTTCATTCTGGGAACCAACGGAGCTACCATCAACCACATGACTGGGATCACCGACA GGATAAGCAAATGGCTATCTCTCATCGAGATACCGGTGTTTGCTGCAGCAGTGCTGGCAATCCTCGTCAAAGGCG AGATGAATTTTTGGAGTAAGCAAATGAGGTACCAAACAGAGCCTATACAAAGCATTGGTAAGTGGATGTTGCACC TCGCCTGGTTTTGGCGATTGGAAATAAATTTACTAAAAGAAATCGTTAGGTCAATGGGCGCCAATCGTTGGTACA GTACTCGCTGTATTGGGATCACTATATATGCTCCTTTCTGCGGATATGGAAGCCGCGGGACAAGAAGATGACCAA CAAGAAGAGATTATCGTTGGAAAATCCCCAAACTACGACAGCACTGTTTCATACGCCGGAAGCAGTTCCGCGCAA GATTCTAGAACAAGTGCCGAGAGACAGGACTCGGATATCGAAATGACAACTATACGCCGCCCTACTACCAATCAA ACCACCACCACTCAATCCCAGCACGACTTAGGAAGACGAAAGGTCGCCCGCTTCTTTAATGCAGCAAGCGCCATC ATGACCGCCAAAGCCCACAATCAAATCAAGAAGACGGGTTTCAATCCCGAAGCAAAAACAAATTACCCCGAGATC CCAGGAGAAATATACAGAAACTCATATCTCCCTGATCATAAAGCCCATTACCAAAGGTCATCTACACCCGATAAC CGATCAAGAGCTGAAAGTTTCACAAGTCGCAGGAACTCTGTGGATAATGGCGAAGGCAGCTCTGGGCCCCGGAGT ACAACACGTCATTCTGTGCCTGCTCCAGCTGTCTCGCGGCCAAAATCACGCCAAGCTCACTCAAATTCGCTCCCG GGTGGGGGGTTATTTGAGACATCGACCCTGCAGTGTCCTCCAGCCACACTTGGAGGGTGGCAGCGACAATTGAGT CCCTTCGATACAATGTCGATCTCACGAAGTAGAACACCGTCTATTTCCGAGGTCAGCCCCACAAATTCATCGCCG GGACCTCAGTTCCTGCCGGAGATAGTAGTTTCTGCCCATGAAGGTAGTTGA |