© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g1457.t1 |
| Gene name | |
| Location | scaffold_01:3840520..3842048 |
| Strand | + |
| Gene length (bp) | 1528 |
| Transcript length (bp) | 1239 |
| Coding sequence length (bp) | 1239 |
| Protein length (aa) | 413 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 25 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 21 | 40 | 19 |
| 2 | 50 | 72 | 22 |
| 3 | 169 | 191 | 22 |
| 4 | 195 | 217 | 22 |
| 5 | 272 | 294 | 22 |
| 6 | 299 | 316 | 17 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 2.68 | 0.58 | 4.78 |
| 5d_25C | Five days - 25 degrees Celsius | 2.69 | 0.57 | 4.82 |
| 7d_25C | Seven days - 25 degrees Celsius | 1.93 | 0.27 | 3.59 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.96 | 0.00 | 1.95 |
| 7d_15C | Seven days - 15 degrees Celsius | 1.74 | 0.00 | 3.51 |
| 7d_30C | Seven days - 30 degrees Celsius | 4.28 | 1.18 | 7.38 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.995129 | no |
| 3d_25C | 7d_25C | 0.572329 | no |
| 3d_25C | 7d_15C | 0.471370 | no |
| 3d_25C | 7d_30C | 0.298711 | no |
| 3d_25C | 10d_25C | 0.058634 | no |
| 5d_25C | 7d_25C | 0.557696 | no |
| 5d_25C | 7d_15C | 0.457726 | no |
| 5d_25C | 7d_30C | 0.296946 | no |
| 5d_25C | 10d_25C | 0.055151 | no |
| 7d_25C | 7d_15C | 0.898780 | no |
| 7d_25C | 7d_30C | 0.080462 | no |
| 7d_25C | 10d_25C | 0.237381 | no |
| 7d_15C | 7d_30C | 0.090912 | no |
| 7d_15C | 10d_25C | 0.376975 | no |
| 7d_30C | 10d_25C | 0.010083 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1457.t1 MGSNGAKFLWCNLGATCMTQWVHPSDVFSVLLILGGDIVARALAQLAGSGLTPVTFSFGWVAYSVSALVSAVGEN KLMPQNVDCKCKVINGKSGYSRDNSSWVIGRIVRDFDTWSGTATKEKTKKLLGEKWEELKSLDKAAEEPTRAGLV VTIYEPSATPKAGLAKRDLIFWSGLLIMLLQLGIAAIPCGLFGDWGILIITACGNVLAIVTGVLPQWKKEKWACR PKSKYSYILTRGNGAQHAIVILGNGHGLNLEDLASGQSNVESSTNTLTRAVLLALSIFWVLLLIAAAGLRGNTWF LLAIGGIGIVQNVFVAGRSMKPENYGIHLDYVGVFGKTKVMDTLLDVEQKYPGIGRSMRDEFFPGKLPLAGVRAW EQIEQSTESEPRAKAPRESQDDSEETQAEERQVEERI* |
| Coding | >Pro_DTO377G3_2|g1457.t1 ATGGGTTCTAACGGTGCGAAGTTTCTGTGGTGTAATCTCGGCGCTACATGCATGACTCAATGGGTCCACCCTAGC GATGTATTTTCCGTACTACTGATCCTGGGCGGTGATATTGTTGCTCGCGCGCTGGCACAACTTGCAGGAAGTGGC CTGACGCCAGTCACATTCTCGTTTGGATGGGTTGCGTACTCCGTCTCGGCGCTTGTATCTGCCGTTGGCGAAAAC AAACTCATGCCACAGAACGTGGATTGCAAATGCAAAGTCATCAATGGCAAGAGTGGATACAGTAGAGACAACTCG AGCTGGGTTATAGGCCGTATTGTGCGCGATTTTGATACATGGAGCGGCACTGCTACCAAAGAGAAGACCAAAAAA CTTCTGGGAGAAAAGTGGGAGGAACTCAAATCCCTCGATAAGGCTGCAGAGGAGCCAACAAGAGCTGGTCTTGTT GTTACTATCTACGAGCCGAGTGCGACACCAAAGGCCGGCCTAGCTAAACGCGATCTTATTTTTTGGAGCGGCTTG CTCATCATGTTATTGCAATTGGGAATTGCGGCTATACCATGTGGACTTTTCGGCGATTGGGGCATTTTGATAATT ACGGCATGCGGCAATGTTCTTGCCATCGTGACTGGAGTTCTCCCACAATGGAAGAAGGAAAAGTGGGCGTGCCGG CCTAAGTCCAAGTATTCCTATATTCTCACTCGAGGTAACGGTGCGCAACATGCCATCGTTATTCTTGGTAATGGA CATGGCTTGAACCTTGAGGATTTGGCATCTGGACAGAGCAATGTTGAATCCTCTACTAATACCTTGACCCGAGCT GTTCTCCTCGCCCTCTCTATATTCTGGGTACTTCTTCTCATCGCCGCAGCAGGTCTTAGGGGAAACACTTGGTTT CTTCTCGCCATCGGCGGTATTGGCATTGTTCAGAATGTTTTCGTCGCTGGTCGAAGCATGAAGCCGGAGAATTAT GGCATTCATCTAGATTATGTCGGGGTCTTCGGTAAAACGAAAGTGATGGATACACTCTTGGATGTTGAACAGAAG TATCCAGGCATAGGTCGGAGCATGCGTGACGAGTTCTTTCCCGGAAAGCTTCCTCTAGCCGGAGTTCGAGCGTGG GAACAGATCGAACAATCCACTGAATCTGAGCCTCGAGCGAAAGCGCCTCGGGAGTCTCAAGATGACTCTGAAGAA ACTCAAGCTGAAGAGCGTCAAGTTGAAGAGCGGATCTAA |
| Transcript | >Pro_DTO377G3_2|g1457.t1 ATGGGTTCTAACGGTGCGAAGTTTCTGTGGTGTAATCTCGGCGCTACATGCATGACTCAATGGGTCCACCCTAGC GATGTATTTTCCGTACTACTGATCCTGGGCGGTGATATTGTTGCTCGCGCGCTGGCACAACTTGCAGGAAGTGGC CTGACGCCAGTCACATTCTCGTTTGGATGGGTTGCGTACTCCGTCTCGGCGCTTGTATCTGCCGTTGGCGAAAAC AAACTCATGCCACAGAACGTGGATTGCAAATGCAAAGTCATCAATGGCAAGAGTGGATACAGTAGAGACAACTCG AGCTGGGTTATAGGCCGTATTGTGCGCGATTTTGATACATGGAGCGGCACTGCTACCAAAGAGAAGACCAAAAAA CTTCTGGGAGAAAAGTGGGAGGAACTCAAATCCCTCGATAAGGCTGCAGAGGAGCCAACAAGAGCTGGTCTTGTT GTTACTATCTACGAGCCGAGTGCGACACCAAAGGCCGGCCTAGCTAAACGCGATCTTATTTTTTGGAGCGGCTTG CTCATCATGTTATTGCAATTGGGAATTGCGGCTATACCATGTGGACTTTTCGGCGATTGGGGCATTTTGATAATT ACGGCATGCGGCAATGTTCTTGCCATCGTGACTGGAGTTCTCCCACAATGGAAGAAGGAAAAGTGGGCGTGCCGG CCTAAGTCCAAGTATTCCTATATTCTCACTCGAGGTAACGGTGCGCAACATGCCATCGTTATTCTTGGTAATGGA CATGGCTTGAACCTTGAGGATTTGGCATCTGGACAGAGCAATGTTGAATCCTCTACTAATACCTTGACCCGAGCT GTTCTCCTCGCCCTCTCTATATTCTGGGTACTTCTTCTCATCGCCGCAGCAGGTCTTAGGGGAAACACTTGGTTT CTTCTCGCCATCGGCGGTATTGGCATTGTTCAGAATGTTTTCGTCGCTGGTCGAAGCATGAAGCCGGAGAATTAT GGCATTCATCTAGATTATGTCGGGGTCTTCGGTAAAACGAAAGTGATGGATACACTCTTGGATGTTGAACAGAAG TATCCAGGCATAGGTCGGAGCATGCGTGACGAGTTCTTTCCCGGAAAGCTTCCTCTAGCCGGAGTTCGAGCGTGG GAACAGATCGAACAATCCACTGAATCTGAGCCTCGAGCGAAAGCGCCTCGGGAGTCTCAAGATGACTCTGAAGAA ACTCAAGCTGAAGAGCGTCAAGTTGAAGAGCGGATCTAA |
| Gene | >Pro_DTO377G3_2|g1457.t1 ATGGGTTCTAACGGTGCGAAGTTTCTGTGGTGTAATCTCGGCGCTACATGCATGTAAGTACCCAATTTGTCAACA GGGCCTGTGCCTGGCCAGGACTGTTCGTACCCCCACCACATCCTCCTGGATTTCGACGTTCAACGGACATTATAT TCCTCATTACGCAATTTTCATTTGAACACAATTCTTCCTTCTTCGAGGAAGAAATCATGGCGCCCTTTCTCGCTA CCTTACTATCCCGTGAACCTCGATTTGATCCGACTGTATCCTCTAACGAATTCAGGACTCAATGGGTCCACCCTA GCGATGTATTTTCCGTACTACTGATCCTGGGCGGTGATATTGTTGCTCGCGCGCTGGCACAACTTGCAGGAAGTG GCCTGACGCCAGTCACATTCTCGTTTGGTATGGCATCTTTAAGCCCTATTCTAACGAAGATTCCATGCTAAGTCG ATGTACTCGAATAGGATGGGTTGCGTACTCCGTCTCGGCGCTTGTATCTGCCGTTGGCGAAAACAAACTCATGCC ACAGAACGTGGATTGCAAATGCAAAGTCATCAATGGCAAGAGTGGATACAGTAGAGACAACTCGAGCTGGGTTAT AGGCCGTATTGTGCGCGATTTTGATACATGGAGCGGCACTGCTACCAAAGAGAAGACCAAAAAACTTCTGGGAGA AAAGTGGGAGGAACTCAAATCCCTCGATAAGGCTGCAGAGGAGCCAACAAGAGCTGGTCTTGTTGTTACTATCTA CGAGCCGAGTGCGACACCAAAGGCCGGCCTAGCTAAACGCGATCTTATTTTTTGGAGCGGCTTGCTCATCATGTT ATTGCAATTGGGAATTGCGGCTATACCATGTGGACTTTTCGGCGATTGGGGCATTTTGATAATTACGGCATGCGG CAATGTTCTTGCCATCGTGACTGGAGTTCTCCCACAATGGAAGAAGGAAAAGTGGGCGTGCCGGCCTAAGTCCAA GTATTCCTATATTCTCACTCGAGGTAACGGTGCGCAACATGCCATCGTTATTCTTGGTAATGGACATGGCTTGAA CCTTGAGGATTTGGCATCTGGACAGAGCAATGTTGAATCCTCTACTAATACCTTGACCCGAGCTGTTCTCCTCGC CCTCTCTATATTCTGGGTACTTCTTCTCATCGCCGCAGCAGGTCTTAGGGGAAACACTTGGTTTCTTCTCGCCAT CGGCGGTATTGGCATTGTTCAGAATGTTTTCGTCGCTGGTCGAAGCATGAAGCCGGAGAATTATGGCATTCATCT AGATTATGTCGGGGTCTTCGGTAAAACGAAAGTGATGGATACACTCTTGGATGTTGAACAGAAGTATCCAGGCAT AGGTCGGAGCATGCGTGACGAGTTCTTTCCCGGAAAGCTTCCTCTAGCCGGAGTTCGAGCGTGGGAACAGATCGA ACAATCCACTGAATCTGAGCCTCGAGCGAAAGCGCCTCGGGAGTCTCAAGATGACTCTGAAGAAACTCAAGCTGA AGAGCGTCAAGTTGAAGAGCGGATCTAA |