© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g144.t1 |
| Gene name | |
| Location | scaffold_01:361246..362194 |
| Strand | + |
| Gene length (bp) | 948 |
| Transcript length (bp) | 750 |
| Coding sequence length (bp) | 750 |
| Protein length (aa) | 250 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.4E-11 | 15 | 83 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 5.3E-12 | 176 | 236 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 140.86 | 85.10 | 196.61 |
| 5d_25C | Five days - 25 degrees Celsius | 148.23 | 89.91 | 206.56 |
| 7d_25C | Seven days - 25 degrees Celsius | 144.84 | 87.63 | 202.05 |
| 10d_25C | Ten days - 25 degrees Celsius | 189.76 | 116.23 | 263.29 |
| 7d_15C | Seven days - 15 degrees Celsius | 141.00 | 84.53 | 197.46 |
| 7d_30C | Seven days - 30 degrees Celsius | 156.65 | 95.24 | 218.06 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.874448 | no |
| 3d_25C | 7d_25C | 0.935291 | no |
| 3d_25C | 7d_15C | 0.997772 | no |
| 3d_25C | 7d_30C | 0.711641 | no |
| 3d_25C | 10d_25C | 0.175287 | no |
| 5d_25C | 7d_25C | 0.947213 | no |
| 5d_25C | 7d_15C | 0.881577 | no |
| 5d_25C | 7d_30C | 0.865916 | no |
| 5d_25C | 10d_25C | 0.286918 | no |
| 7d_25C | 7d_15C | 0.940264 | no |
| 7d_25C | 7d_30C | 0.799150 | no |
| 7d_25C | 10d_25C | 0.228731 | no |
| 7d_15C | 7d_30C | 0.727167 | no |
| 7d_15C | 10d_25C | 0.189292 | no |
| 7d_30C | 10d_25C | 0.439725 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g144.t1 MAAVSAAGIPPNATVYVKNLDERIKLEQLKHALEEIFSEYGTILEVVAKTNLKAKGQAFIVFDNVESATRAIEDI NGFDLFEKPMVLDYAKTPSDATVQREGGSEELEAHKRRRLAEKERKQAHEALEAQKKLKRPAAAVEPARPAKTTK GAGLKPTAAATTAVVPDEYLPPNKILFLRELPEDATQEGLSAIFGRFEGFQEVRLVPGRKGIAFVEYEAEAGAIS AKEATSGMPMGDQGKAIRVTYQRQ* |
| Coding | >Pro_DTO377G3_2|g144.t1 ATGGCTGCCGTCTCAGCAGCTGGTATTCCCCCGAATGCGACAGTATATGTCAAGAATCTCGACGAGCGAATCAAG CTTGAGCAGTTGAAGCATGCCCTGGAGGAGATCTTTTCCGAATATGGCACCATTCTAGAGGTCGTCGCAAAGACT AACCTCAAAGCTAAGGGCCAGGCCTTCATCGTCTTTGACAACGTCGAATCCGCTACCCGCGCTATTGAGGATATC AACGGCTTCGATCTCTTTGAGAAGCCTATGGTGCTGGATTATGCGAAGACACCTAGTGATGCGACAGTCCAGCGG GAGGGTGGCAGCGAAGAGCTCGAGGCTCACAAGCGGAGACGCTTAGCTGAGAAAGAGCGCAAACAAGCCCACGAG GCCCTCGAAGCACAGAAGAAACTCAAGCGTCCTGCTGCCGCCGTCGAACCCGCACGCCCAGCCAAGACCACCAAA GGTGCCGGTCTCAAACCCACCGCTGCCGCTACCACCGCTGTCGTCCCAGACGAGTACCTCCCGCCCAACAAGATT CTGTTCTTGCGGGAACTACCAGAAGACGCAACCCAGGAAGGTCTGTCTGCTATTTTTGGCCGGTTCGAAGGATTT CAGGAAGTCAGATTGGTGCCTGGTCGCAAGGGAATTGCATTCGTGGAATACGAGGCCGAGGCTGGAGCAATCAGC GCAAAGGAGGCTACATCAGGCATGCCCATGGGCGACCAGGGCAAGGCGATTCGCGTTACCTACCAGCGACAGTAG |
| Transcript | >Pro_DTO377G3_2|g144.t1 ATGGCTGCCGTCTCAGCAGCTGGTATTCCCCCGAATGCGACAGTATATGTCAAGAATCTCGACGAGCGAATCAAG CTTGAGCAGTTGAAGCATGCCCTGGAGGAGATCTTTTCCGAATATGGCACCATTCTAGAGGTCGTCGCAAAGACT AACCTCAAAGCTAAGGGCCAGGCCTTCATCGTCTTTGACAACGTCGAATCCGCTACCCGCGCTATTGAGGATATC AACGGCTTCGATCTCTTTGAGAAGCCTATGGTGCTGGATTATGCGAAGACACCTAGTGATGCGACAGTCCAGCGG GAGGGTGGCAGCGAAGAGCTCGAGGCTCACAAGCGGAGACGCTTAGCTGAGAAAGAGCGCAAACAAGCCCACGAG GCCCTCGAAGCACAGAAGAAACTCAAGCGTCCTGCTGCCGCCGTCGAACCCGCACGCCCAGCCAAGACCACCAAA GGTGCCGGTCTCAAACCCACCGCTGCCGCTACCACCGCTGTCGTCCCAGACGAGTACCTCCCGCCCAACAAGATT CTGTTCTTGCGGGAACTACCAGAAGACGCAACCCAGGAAGGTCTGTCTGCTATTTTTGGCCGGTTCGAAGGATTT CAGGAAGTCAGATTGGTGCCTGGTCGCAAGGGAATTGCATTCGTGGAATACGAGGCCGAGGCTGGAGCAATCAGC GCAAAGGAGGCTACATCAGGCATGCCCATGGGCGACCAGGGCAAGGCGATTCGCGTTACCTACCAGCGACAGTAG |
| Gene | >Pro_DTO377G3_2|g144.t1 ATGGCTGCCGTCTCAGCAGCTGGTATTCCCCCGAATGCGACGTGAGTACTATATCTACATGCTATGTCCCCATGC TAACAAGTCTTCACAGAGTATATGTGCGCCTGTCCCTCCCCTCCATCATATCACCACTCCGCTCCCGCATTACCA TACTGACCGATTGCTTCCCCCTATTAGGTCAAGAATCTCGACGAGCGAATCAAGCTTGAGCAGTTGAAGCATGCC CTGGAGGAGATCTTTTCCGAATATGGCACCATTCTAGAGGTCGTCGCAAAGACTAACCTCAAAGCTAAGGGCCAG GCCTTCATCGTCTTTGACAACGTCGAATCCGCTACCCGCGCTATTGAGGATATCAACGGCTTCGATCTCTTTGAG AAGCCTATGGTGCTGGATTATGCGAAGACACCTAGTGATGCGACAGTCCAGCGGGAGGGTGGCAGCGAAGAGCTC GAGGCTCACAAGCGGAGACGCTTAGCTGAGAAAGGTACGTTTAACAGATACCGGCGCACTAAATACAAATACTCA ATCCGTACTAATGATTGTCGTTTTACAGAGCGCAAACAAGCCCACGAGGCCCTCGAAGCACAGAAGAAACTCAAG CGTCCTGCTGCCGCCGTCGAACCCGCACGCCCAGCCAAGACCACCAAAGGTGCCGGTCTCAAACCCACCGCTGCC GCTACCACCGCTGTCGTCCCAGACGAGTACCTCCCGCCCAACAAGATTCTGTTCTTGCGGGAACTACCAGAAGAC GCAACCCAGGAAGGTCTGTCTGCTATTTTTGGCCGGTTCGAAGGATTTCAGGAAGTCAGATTGGTGCCTGGTCGC AAGGGAATTGCATTCGTGGAATACGAGGCCGAGGCTGGAGCAATCAGCGCAAAGGAGGCTACATCAGGCATGCCC ATGGGCGACCAGGGCAAGGCGATTCGCGTTACCTACCAGCGACAGTAG |