© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1434.t1 |
| Gene name | |
| Location | scaffold_01:3782359..3784108 |
| Strand | + |
| Gene length (bp) | 1749 |
| Transcript length (bp) | 1401 |
| Coding sequence length (bp) | 1401 |
| Protein length (aa) | 467 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01480 | PWI | PWI domain | 1.7E-29 | 31 | 101 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006397 | mRNA processing | Yes |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0016071 | mRNA metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0006396 | RNA processing | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 75.52 | 45.80 | 105.24 |
| 5d_25C | Five days - 25 degrees Celsius | 120.58 | 74.35 | 166.80 |
| 7d_25C | Seven days - 25 degrees Celsius | 127.63 | 78.08 | 177.17 |
| 10d_25C | Ten days - 25 degrees Celsius | 198.04 | 120.36 | 275.71 |
| 7d_15C | Seven days - 15 degrees Celsius | 98.41 | 60.13 | 136.68 |
| 7d_30C | Seven days - 30 degrees Celsius | 120.66 | 73.87 | 167.44 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.022165 | yes |
| 3d_25C | 7d_25C | 0.012303 | yes |
| 3d_25C | 7d_15C | 0.260457 | no |
| 3d_25C | 7d_30C | 0.025611 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.855921 | no |
| 5d_25C | 7d_15C | 0.403453 | no |
| 5d_25C | 7d_30C | 0.998067 | no |
| 5d_25C | 10d_25C | 0.015833 | yes |
| 7d_25C | 7d_15C | 0.265168 | no |
| 7d_25C | 7d_30C | 0.861024 | no |
| 7d_25C | 10d_25C | 0.038585 | yes |
| 7d_15C | 7d_30C | 0.416777 | no |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.018034 | yes |
| Orthofinder run ID | 2 |
| Orthogroup | 477 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1434.t1 MASSVDAKLMRRTKFPPEFSKKVDMTKVNIEVMKKWIASQISKILGNEDDVVIELCFAHLEGARYPDIKSLQIQL TGFLDKDTAKFCQELWSLCLSGQANPQGVPKELLEAKKLELIQEKLEAEKASEALRRRREQDQNRERELDDVRRR ERPDRGRGGRGGDRGDRGGRGGRGRDFNRRFSPPRDRNRSRDRFREPPLRRDLDSYVPPGNRRRRSSRSPHGTRS PSGTPKPSSPSRRNRDEPHHRRRERPSISVSPERRRGGARRRSSPDYGDRVKARPISRSRSPRSRSPRGNRRRSS VSRSRSVSRSRSRRPSGRYARHDSRRLSRSRSRSRSRTPDRTGTRDRGENRRRRSPSGDRRLSRSRSNSPKKDTD GKRPLSVERDNPDDKRRKMADENEVSSTRTPPKADEPPKTDDNSFLFNTKKPLSVWTQSTAFREKLLRERCIAMR RQAAQKPSSASQPKQD* |
| Coding | >Pro_DTO377G3_2|g1434.t1 ATGGCGTCCAGCGTAGATGCCAAGCTGATGAGGCGGACTAAGTTCCCCCCTGAGTTCAGCAAGAAGGTAGATATG ACCAAGGTCAATATCGAAGTTATGAAGAAATGGATTGCAAGTCAAATCTCCAAGATATTGGGGAACGAGGATGAC GTCGTTATCGAGCTCTGCTTCGCGCATCTTGAGGGGGCACGCTACCCCGATATTAAATCTCTCCAAATCCAACTC ACCGGATTTCTAGACAAAGATACCGCCAAGTTCTGTCAGGAGCTGTGGTCGCTGTGCCTAAGCGGTCAGGCCAAT CCACAGGGCGTCCCGAAGGAACTCCTGGAAGCCAAAAAGCTTGAGCTCATACAAGAGAAGCTCGAGGCCGAGAAA GCCAGCGAGGCACTTCGTCGCCGACGCGAACAAGACCAGAATCGCGAACGAGAGCTGGACGATGTGAGACGCCGC GAGCGACCAGACCGTGGACGTGGAGGAAGAGGTGGCGATCGTGGAGATCGCGGTGGCCGTGGAGGTCGAGGACGC GACTTCAACAGACGATTCTCGCCTCCCAGAGACCGAAACCGCAGCCGCGACCGATTCCGTGAGCCTCCATTGCGA CGCGACTTGGACTCCTACGTGCCACCTGGTAATCGGCGCCGCCGATCCTCTCGCTCTCCCCACGGCACCCGTTCT CCATCTGGAACCCCAAAGCCGTCGTCCCCATCTCGCCGAAACCGCGACGAACCACACCACAGACGACGCGAACGC CCAAGCATCTCAGTCTCTCCCGAGCGACGCCGCGGAGGAGCGAGAAGGCGCAGCAGTCCGGATTACGGTGACCGT GTTAAAGCAAGACCCATTTCCCGCAGCCGTTCCCCGCGCTCACGTTCCCCCAGAGGAAACCGCCGCCGAAGCTCC GTCTCTCGCAGCCGCAGTGTATCTCGCTCGCGATCCCGCCGCCCGTCTGGACGTTATGCCCGCCACGATTCCCGT CGCTTAAGTCGCAGCCGCAGCCGCAGCCGCAGCCGCACCCCTGACCGTACCGGTACACGTGATCGTGGTGAGAAC CGTCGACGCCGCAGCCCCAGCGGTGATCGGCGCCTTAGCCGCAGCCGCAGCAACAGCCCCAAGAAGGATACTGAC GGCAAGCGGCCGCTCTCTGTGGAAAGAGACAACCCTGATGACAAACGACGCAAGATGGCTGATGAGAATGAGGTC TCCTCTACCCGAACCCCTCCGAAAGCTGATGAGCCGCCCAAAACTGATGACAATTCATTCCTATTTAATACTAAG AAACCGCTTTCTGTTTGGACACAGTCGACTGCATTCCGTGAGAAATTACTCCGGGAGAGATGTATTGCTATGCGT CGTCAGGCTGCCCAGAAGCCGAGCAGTGCCTCACAGCCAAAGCAGGACTAA |
| Transcript | >Pro_DTO377G3_2|g1434.t1 ATGGCGTCCAGCGTAGATGCCAAGCTGATGAGGCGGACTAAGTTCCCCCCTGAGTTCAGCAAGAAGGTAGATATG ACCAAGGTCAATATCGAAGTTATGAAGAAATGGATTGCAAGTCAAATCTCCAAGATATTGGGGAACGAGGATGAC GTCGTTATCGAGCTCTGCTTCGCGCATCTTGAGGGGGCACGCTACCCCGATATTAAATCTCTCCAAATCCAACTC ACCGGATTTCTAGACAAAGATACCGCCAAGTTCTGTCAGGAGCTGTGGTCGCTGTGCCTAAGCGGTCAGGCCAAT CCACAGGGCGTCCCGAAGGAACTCCTGGAAGCCAAAAAGCTTGAGCTCATACAAGAGAAGCTCGAGGCCGAGAAA GCCAGCGAGGCACTTCGTCGCCGACGCGAACAAGACCAGAATCGCGAACGAGAGCTGGACGATGTGAGACGCCGC GAGCGACCAGACCGTGGACGTGGAGGAAGAGGTGGCGATCGTGGAGATCGCGGTGGCCGTGGAGGTCGAGGACGC GACTTCAACAGACGATTCTCGCCTCCCAGAGACCGAAACCGCAGCCGCGACCGATTCCGTGAGCCTCCATTGCGA CGCGACTTGGACTCCTACGTGCCACCTGGTAATCGGCGCCGCCGATCCTCTCGCTCTCCCCACGGCACCCGTTCT CCATCTGGAACCCCAAAGCCGTCGTCCCCATCTCGCCGAAACCGCGACGAACCACACCACAGACGACGCGAACGC CCAAGCATCTCAGTCTCTCCCGAGCGACGCCGCGGAGGAGCGAGAAGGCGCAGCAGTCCGGATTACGGTGACCGT GTTAAAGCAAGACCCATTTCCCGCAGCCGTTCCCCGCGCTCACGTTCCCCCAGAGGAAACCGCCGCCGAAGCTCC GTCTCTCGCAGCCGCAGTGTATCTCGCTCGCGATCCCGCCGCCCGTCTGGACGTTATGCCCGCCACGATTCCCGT CGCTTAAGTCGCAGCCGCAGCCGCAGCCGCAGCCGCACCCCTGACCGTACCGGTACACGTGATCGTGGTGAGAAC CGTCGACGCCGCAGCCCCAGCGGTGATCGGCGCCTTAGCCGCAGCCGCAGCAACAGCCCCAAGAAGGATACTGAC GGCAAGCGGCCGCTCTCTGTGGAAAGAGACAACCCTGATGACAAACGACGCAAGATGGCTGATGAGAATGAGGTC TCCTCTACCCGAACCCCTCCGAAAGCTGATGAGCCGCCCAAAACTGATGACAATTCATTCCTATTTAATACTAAG AAACCGCTTTCTGTTTGGACACAGTCGACTGCATTCCGTGAGAAATTACTCCGGGAGAGATGTATTGCTATGCGT CGTCAGGCTGCCCAGAAGCCGAGCAGTGCCTCACAGCCAAAGCAGGACTAA |
| Gene | >Pro_DTO377G3_2|g1434.t1 ATGGCGTCCAGCGTAGATGCCAAGCTGATGAGGCGGACTAAGTTCCCCCCTGAGTTCAGCAAGAAGGTAGATATG ACCAAGGTCAATATCGAAGTTATGAAGAAGTGACTTTCCCCGGGCTTTTTTCGGTATCTCCGGTTTACTGACATT GCTTTTTCTCCGCCCACAGATGGATTGCAAGTCAAATCTCCAAGATATTGGGGAACGAGGATGACGTCGTTATCG AGCTCTGCTTCGCGCATCTTGAGGGGGCACGCTACGTAAGTGGTGCCGTCGGATATTTAGTGTCCCAACCCTAGT TTGCTGACATGTGCTTCTGTTCTAGCCCGATATTAAATCTCTCCAAATCCAACTCACCGGATTTCTAGACAAAGA TACCGCCAAGTTCTGTCAGGAGCTGTGGTCGCTGTGCCTAAGCGGTCAGGCCAATCCACAGGGCGTCCCGAAGGA ACTCCTGGAAGCCAAAAAGCTTGAGCTCATACAAGAGAAGGTGATTGTAAGCGTGCTCTCGACCTTGGATATTTT CTAATTATATTACATTACAGCTCGAGGCCGAGAAAGCCAGCGAGGCACTTCGTCGCCGACGCGAACAAGACCAGA ATCGCGAACGAGAGCTGGACGATGTGAGACGCCGCGAGCGACCAGACCGTGGACGTGGAGGAAGAGGTGGCGATC GTGGAGATCGCGGTGGCCGTGGAGGTCGAGGACGCGACTTCAACAGACGATTCTCGCCTCCCAGAGACCGAAACC GCAGCCGCGACCGATTCCGTGAGCCTCCATTGCGACGCGACTTGGACTCCTACGTGCCACCTGGTAATCGGCGCC GCCGATCCTCTCGCTCTCCCCACGGCACCCGTTCTCCATCTGGAACCCCAAAGCCGTCGTCCCCATCTCGCCGAA ACCGCGACGAACCACACCACAGACGACGCGAACGCCCAAGCATCTCAGTCTCTCCCGAGCGACGCCGCGGAGGAG CGAGAAGGCGCAGCAGTCCGGATTACGGTGACCGTGTTAAAGCAAGACCCATTTCCCGCAGCCGTTCCCCGCGCT CACGTTCCCCCAGAGGAAACCGCCGCCGAAGCTCCGTCTCTCGCAGCCGCAGTGTATCTCGCTCGCGATCCCGCC GCCCGTCTGGACGTTATGCCCGCCACGATTCCCGTCGCTTAAGTCGCAGCCGCAGCCGCAGCCGCAGCCGCACCC CTGACCGTACCGGTACACGTGATCGTGGTGAGAACCGTCGACGCCGCAGCCCCAGCGGTGATCGGCGCCTTAGCC GCAGCCGCAGCAACAGCCCCAAGAAGGATACTGACGGCAAGCGGCCGCTCTCTGTGGAAAGAGACAACCCTGATG ACAAACGACGCAAGATGGCTGATGAGAATGAGGTCTCCTCTACCCGAACCCCTCCGAAAGCTGATGAGCCGCCCA AAACTGATGACAGTGAGACAAAAGTTGCTGAGCAGGTTGGTCATTGAGAATAGAGATTCCTGGTCAACCTCCACC TTGTATCCTTTACTACCCAGATTCATTCCTATTTAATGTTCGTCTAAACAATTCACATGTCATTTGTTTCTCAAA TTGCTGTGTTGAATGATATACTAATGAACCTTCAACGCTCAGACTAAGAAACCGCTTTCTGTTTGGACACAGTCG ACTGCATTCCGTGAGAAATTACTCCGGGAGAGATGTATTGCTATGCGTCGTCAGGCTGCCCAGAAGCCGAGCAGT GCCTCACAGCCAAAGCAGGACTAA |