© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1417.t1 |
| Gene name | |
| Location | scaffold_01:3736209..3738504 |
| Strand | - |
| Gene length (bp) | 2295 |
| Transcript length (bp) | 1554 |
| Coding sequence length (bp) | 1554 |
| Protein length (aa) | 518 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13520 | AA_permease_2 | Amino acid permease | 5.4E-58 | 29 | 470 |
| PF00324 | AA_permease | Amino acid permease | 2.4E-18 | 36 | 480 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 47 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 27 | 49 | 22 |
| 2 | 61 | 83 | 22 |
| 3 | 119 | 141 | 22 |
| 4 | 154 | 171 | 17 |
| 5 | 181 | 203 | 22 |
| 6 | 224 | 246 | 22 |
| 7 | 261 | 283 | 22 |
| 8 | 310 | 332 | 22 |
| 9 | 362 | 384 | 22 |
| 10 | 386 | 408 | 22 |
| 11 | 428 | 450 | 22 |
| 12 | 462 | 481 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 2.06 | 0.40 | 3.72 |
| 5d_25C | Five days - 25 degrees Celsius | 2.22 | 0.45 | 4.00 |
| 7d_25C | Seven days - 25 degrees Celsius | 1.56 | 0.20 | 2.92 |
| 10d_25C | Ten days - 25 degrees Celsius | 1.74 | 0.21 | 3.27 |
| 7d_15C | Seven days - 15 degrees Celsius | 2.22 | 0.45 | 3.99 |
| 7d_30C | Seven days - 30 degrees Celsius | 2.83 | 0.59 | 5.06 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.910832 | no |
| 3d_25C | 7d_25C | 0.635036 | no |
| 3d_25C | 7d_15C | 0.914228 | no |
| 3d_25C | 7d_30C | 0.545446 | no |
| 3d_25C | 10d_25C | 0.797116 | no |
| 5d_25C | 7d_25C | 0.516397 | no |
| 5d_25C | 7d_15C | 0.995278 | no |
| 5d_25C | 7d_30C | 0.658405 | no |
| 5d_25C | 10d_25C | 0.688872 | no |
| 7d_25C | 7d_15C | 0.524142 | no |
| 7d_25C | 7d_30C | 0.221641 | no |
| 7d_25C | 10d_25C | 0.884890 | no |
| 7d_15C | 7d_30C | 0.658791 | no |
| 7d_15C | 10d_25C | 0.695191 | no |
| 7d_30C | 10d_25C | 0.349546 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1417.t1 MDKEEYNSDEAQLAQLGHKSELKRNYSLISMLGLAFAILNSWTALSASLSLSLPSGGSTSIVWGLITAGICNLCM ATSLAEFLSAYPTAGGQYHWVAVTSWKKWMPILSWITGWINCSGWVALVATAGLLGSQLILGVISLMNPSYNPQR WHQFLIYIGYNIVAFLVNAFMNNIMPYVTKAAFIWSLSGFAIICITVLSCASPNYNSGEFVFTDFINETGWPDGI AWLLGLLQGGLGVTGFDGVAHMIEEIPNPSVEGPKIMIACVVIGTVTGAIFLIVLLFVAGDINEVIDSAATPLLA ILKNATSSNAGAICLLIFPLVCALFAAIAIMTTSSRMVYAFARDGGLPASPFFSRVHPKLNVPLNSLYLNLALVV IFGCIFLGSSSAFNAIVSASVVLLGLSYGMPIAVNCCRGRKMLPERSFVLPEIVGWTINIISLAYILLTTILFLF PPELPATGSNMNYCVAAFGIVFIISFIQWMVDGRKNFVGPRLEMEVFQGEVAAQPEQPIPMVEHHKA* |
| Coding | >Pro_DTO377G3_2|g1417.t1 ATGGACAAAGAAGAATACAATAGCGACGAGGCTCAGCTGGCCCAGCTGGGCCATAAGTCGGAGCTGAAGCGAAAT TACTCGCTGATTTCAATGCTGGGCCTTGCTTTTGCCATTCTAAATTCATGGACTGCTTTATCGGCAAGTTTGTCT CTCAGTTTACCCTCGGGAGGAAGCACTAGTATTGTCTGGGGTCTTATTACAGCCGGAATCTGTAATTTGTGCATG GCCACTTCCCTAGCCGAGTTTCTTTCTGCATACCCCACTGCCGGAGGCCAATATCACTGGGTCGCTGTGACTTCG TGGAAAAAATGGATGCCAATTCTCTCCTGGATCACTGGCTGGATCAACTGCTCTGGCTGGGTTGCGCTGGTCGCA ACTGCTGGTCTTTTGGGCAGTCAGCTTATTCTGGGTGTGATCTCTCTCATGAACCCGAGCTATAACCCCCAGCGC TGGCACCAATTCCTAATCTACATCGGCTACAATATCGTTGCCTTCCTCGTCAATGCCTTTATGAACAACATTATG CCCTATGTCACCAAGGCAGCTTTCATCTGGTCTTTGTCAGGATTTGCCATCATTTGCATTACTGTACTTTCATGT GCCTCGCCTAACTATAATTCCGGAGAATTTGTCTTCACCGACTTCATCAACGAAACAGGCTGGCCTGATGGAATT GCGTGGTTGCTTGGGCTTCTGCAAGGTGGTCTTGGTGTTACCGGCTTTGACGGTGTCGCCCACATGATTGAAGAA ATCCCCAATCCCTCGGTTGAGGGGCCCAAGATCATGATTGCTTGTGTCGTGATCGGTACCGTTACTGGAGCCATC TTCCTTATTGTGCTGCTCTTTGTGGCTGGCGATATCAACGAAGTTATTGATTCTGCTGCAACCCCGCTGCTTGCA ATCTTGAAGAATGCCACTTCGAGCAACGCAGGCGCTATCTGTCTCTTGATCTTCCCCCTAGTCTGCGCTTTATTC GCTGCAATCGCTATTATGACTACTAGCAGTCGTATGGTCTACGCCTTCGCGCGTGATGGCGGTCTCCCTGCGTCT CCCTTCTTCTCTCGTGTTCACCCCAAACTAAACGTCCCATTGAACTCATTATATCTCAATCTGGCTCTCGTGGTC ATATTCGGTTGTATCTTCTTGGGCTCATCCAGTGCTTTCAATGCTATTGTCTCAGCGTCAGTGGTGTTGCTCGGC CTTTCATATGGAATGCCAATTGCAGTGAACTGCTGCCGAGGAAGAAAAATGCTACCGGAGCGCTCATTCGTCCTG CCAGAAATTGTTGGCTGGACCATCAACATCATCTCGCTGGCGTACATTCTTCTGACTACTATCCTCTTCCTCTTC CCCCCTGAGCTGCCTGCCACTGGTAGCAACATGAATTATTGTGTTGCGGCATTTGGTATTGTCTTTATTATCTCT TTCATTCAGTGGATGGTAGATGGACGCAAGAATTTCGTCGGTCCCCGTCTTGAAATGGAAGTCTTCCAAGGAGAG GTTGCTGCTCAGCCGGAGCAGCCGATTCCAATGGTTGAACATCATAAGGCGTAA |
| Transcript | >Pro_DTO377G3_2|g1417.t1 ATGGACAAAGAAGAATACAATAGCGACGAGGCTCAGCTGGCCCAGCTGGGCCATAAGTCGGAGCTGAAGCGAAAT TACTCGCTGATTTCAATGCTGGGCCTTGCTTTTGCCATTCTAAATTCATGGACTGCTTTATCGGCAAGTTTGTCT CTCAGTTTACCCTCGGGAGGAAGCACTAGTATTGTCTGGGGTCTTATTACAGCCGGAATCTGTAATTTGTGCATG GCCACTTCCCTAGCCGAGTTTCTTTCTGCATACCCCACTGCCGGAGGCCAATATCACTGGGTCGCTGTGACTTCG TGGAAAAAATGGATGCCAATTCTCTCCTGGATCACTGGCTGGATCAACTGCTCTGGCTGGGTTGCGCTGGTCGCA ACTGCTGGTCTTTTGGGCAGTCAGCTTATTCTGGGTGTGATCTCTCTCATGAACCCGAGCTATAACCCCCAGCGC TGGCACCAATTCCTAATCTACATCGGCTACAATATCGTTGCCTTCCTCGTCAATGCCTTTATGAACAACATTATG CCCTATGTCACCAAGGCAGCTTTCATCTGGTCTTTGTCAGGATTTGCCATCATTTGCATTACTGTACTTTCATGT GCCTCGCCTAACTATAATTCCGGAGAATTTGTCTTCACCGACTTCATCAACGAAACAGGCTGGCCTGATGGAATT GCGTGGTTGCTTGGGCTTCTGCAAGGTGGTCTTGGTGTTACCGGCTTTGACGGTGTCGCCCACATGATTGAAGAA ATCCCCAATCCCTCGGTTGAGGGGCCCAAGATCATGATTGCTTGTGTCGTGATCGGTACCGTTACTGGAGCCATC TTCCTTATTGTGCTGCTCTTTGTGGCTGGCGATATCAACGAAGTTATTGATTCTGCTGCAACCCCGCTGCTTGCA ATCTTGAAGAATGCCACTTCGAGCAACGCAGGCGCTATCTGTCTCTTGATCTTCCCCCTAGTCTGCGCTTTATTC GCTGCAATCGCTATTATGACTACTAGCAGTCGTATGGTCTACGCCTTCGCGCGTGATGGCGGTCTCCCTGCGTCT CCCTTCTTCTCTCGTGTTCACCCCAAACTAAACGTCCCATTGAACTCATTATATCTCAATCTGGCTCTCGTGGTC ATATTCGGTTGTATCTTCTTGGGCTCATCCAGTGCTTTCAATGCTATTGTCTCAGCGTCAGTGGTGTTGCTCGGC CTTTCATATGGAATGCCAATTGCAGTGAACTGCTGCCGAGGAAGAAAAATGCTACCGGAGCGCTCATTCGTCCTG CCAGAAATTGTTGGCTGGACCATCAACATCATCTCGCTGGCGTACATTCTTCTGACTACTATCCTCTTCCTCTTC CCCCCTGAGCTGCCTGCCACTGGTAGCAACATGAATTATTGTGTTGCGGCATTTGGTATTGTCTTTATTATCTCT TTCATTCAGTGGATGGTAGATGGACGCAAGAATTTCGTCGGTCCCCGTCTTGAAATGGAAGTCTTCCAAGGAGAG GTTGCTGCTCAGCCGGAGCAGCCGATTCCAATGGTTGAACATCATAAGGCGTAA |
| Gene | >Pro_DTO377G3_2|g1417.t1 ATGGACAAAGAAGAATACAATAGCGACGAGGCTCAGCTGGCCCAGCTGGGCCATAAGTCGGAGCTGAAGCGAAAT TACTCGCTGATGTACGTGCTGCAAGTGAACATGAATTCCTGATTGTGCTAATGTCTGTTCGTTTTGAAGTTCAAT GCTGGGCCTTGCTTTTGCCATTCTAAATGTACGTGACGCGCCCGGAAACCAAGTTCCATGAGAATCAACAATTGA CATTTGACAGTCATGGACTGCTTTATCGGCAAGTTTGTCTCTCAGTTTACCCTCGGGAGGAAGCACTAGTATTGT CTGGGGTACGTATCCGCCTGGCTCTCTGTCGATTCTCAATCCAGAGCTGACACGAGTCTCAATAGGTCTTATTAC AGCCGGAATCTGTAATTTGTGCATGGCCACTTCCCTAGCCGAGTTTCTTTCTGCATACCCCACTGCCGGAGGCCA ATATCACTGGGTCGCTGTGACTTCGTGGAAAAAATGGATGCCAATTCTCTCCTGGATCACTGGCTGGATCAACTG CTCTGGCTGGGTTGCGCTGGTCGCAACTGCTGGTCTTTTGGGCAGTCAGCTTATTCTGGGTGTGATCTCTCTCAT GAACCCGGTAGGTTATTCTGAGCTATAACGTTGATATCTTTGACTAACTTCCATATCCAGAGCTATAACCCCCAG CGCTGGCACCAATTCCTAATCTACATCGGCTACAATATCGTTGCCTTCCTCGTCAATGCCTTTATGAACAACATT ATGCCCTATGTCACCAAGGCAGCTTGTGAGATACCCTATACCGAGCTGTCGGAGACTTCTTACTAATTCCCACAG TCATCTGGTCTTTGTCAGGATTTGCCATCATTTGCATTACTGTACTTTCATGTGCCTCGCCTAACTATAATTCCG GAGAGTACGTCTTGTCTGCTCGACAATCCTAGAACTAAATCACTGACAATGAACAGATTTGTCTTCACCGACTTC ATCAACGAAACAGGCTGTAAGTCTTACCGATCATTATCTAACTATGCTCTCAAACTGACTGTTATAGGGCCTGAT GGAATTGCGTGGTTGCTTGGGGTATGTCGTTCGTGCGAAAGTTCATGAGCATCTCTAACATATTCATAGCTTCTG CAAGGTGGTCTTGGTGTTACCGGCTTTGACGGTGTCGCCCACATGATTGAAGGTAACTTCCAGGAGTTTACACTT GGATATGGATCTGAGGCTAATGGATTACAGAAATCCCCAATCCCTCGGTTGAGGGGCCCAAGATCATGATTGCTT GTGTCGTGATCGGTACCGTTACTGGAGCCATCTTCCTTATTGTGCTGCTCTTTGTGGCTGGCGATATCAACGAAG TTATTGATTCTGCTGCAACCCCGCTGCTTGCAATCTTGAAGAATGCCACTTCGAGCAACGCAGGCGCTATCTGTC TCTTGATGTAGGTGTCACTGCTCTCCTGTCTCTTCCTTGTACTGACACCTTTCTAGCTTCCCCCTAGTCTGCGCT TTATTCGCTGCAATCGCTATTATGACTACTAGCAGTCGTATGGTCTACGCCTTCGCGCGGTACGTTATTGTTCAT CTTTCAAATTTGGTCATTATACTGATATAGTTATAGTGATGGCGGTCTCCCTGCGTCTCCCTTCTTCTCTCGTGT TCACCCCAAACTAAACGTCCCATTGAACTCATTATATCTCAATCTGGCTCTCGTGGTCATATTCGGTTGTATCTT CTTGGGCTCATCCAGGTAAGCATATGCATAACACTCCACCCTGGATATTGCTAACATCTCCAAGTGCTTTCAATG CTATTGTCTCAGCGTCAGTGGTGTTGCTCGGCCTTTCATATGGAATGCCAATTGCAGTGAACTGCTGCCGAGGAA GAAAAATGCTACCGGAGCGCTCATTCGTCCTGCCAGAAATTGTTGGCTGGACCATCAACATCGTATGATACCTTT CCCTGCGGTTCACTGAAATTATTACTAACTCAAAACCTCAGATCTCGCTGGCGTACATTCTTCTGACTACTATCC TCTTCCTCTTCCCCCCTGAGCTGCCTGCCACTGGTAGCAACATGAGTGAGTTGACTCTCTTTTTTTGATGCAAAA ACATAAAGCTAATTCGATGTGACAGATTATTGTGTTGCGGCATTTGGTATTGTCTTTATTATCTCTTTCATTCAG TGGATGGTAGATGGACGCAAGAATTTCGTCGGTCCCCGTCTTGAAATGGAAGTCTTCCAAGGAGAGGTTGCTGCT CAGCCGGAGCAGCCGATTCCAATGGTTGAACATCATAAGGCGTAA |