© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1337.t1 |
| Gene name | |
| Location | scaffold_01:3520698..3522327 |
| Strand | - |
| Gene length (bp) | 1629 |
| Transcript length (bp) | 1629 |
| Coding sequence length (bp) | 1629 |
| Protein length (aa) | 543 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF09384 | UTP15_C | UTP15 C terminal | 4.2E-52 | 393 | 539 |
| PF00400 | WD40 | WD domain, G-beta repeat | 1.4E-03 | 131 | 167 |
| PF00400 | WD40 | WD domain, G-beta repeat | 3.9E-03 | 175 | 213 |
| PF00400 | WD40 | WD domain, G-beta repeat | 1.9E-02 | 258 | 295 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005730 | nucleolus | Yes |
| GO:0006364 | rRNA processing | Yes |
| GO:0005515 | protein binding | Yes |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0034470 | ncRNA processing | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0006396 | RNA processing | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0043228 | non-membrane-bounded organelle | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:0008152 | metabolic process | No |
| GO:0005488 | binding | No |
| GO:0043232 | intracellular non-membrane-bounded organelle | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0043229 | intracellular organelle | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0016072 | rRNA metabolic process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0043226 | organelle | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0034660 | ncRNA metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 19.70 | 10.14 | 29.25 |
| 5d_25C | Five days - 25 degrees Celsius | 12.12 | 5.50 | 18.73 |
| 7d_25C | Seven days - 25 degrees Celsius | 11.96 | 5.44 | 18.47 |
| 10d_25C | Ten days - 25 degrees Celsius | 8.01 | 3.17 | 12.85 |
| 7d_15C | Seven days - 15 degrees Celsius | 13.59 | 6.31 | 20.87 |
| 7d_30C | Seven days - 30 degrees Celsius | 14.22 | 6.75 | 21.68 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.085512 | no |
| 3d_25C | 7d_25C | 0.074740 | no |
| 3d_25C | 7d_15C | 0.218830 | no |
| 3d_25C | 7d_30C | 0.279805 | no |
| 3d_25C | 10d_25C | 0.003625 | yes |
| 5d_25C | 7d_25C | 0.977912 | no |
| 5d_25C | 7d_15C | 0.778431 | no |
| 5d_25C | 7d_30C | 0.671313 | no |
| 5d_25C | 10d_25C | 0.211382 | no |
| 7d_25C | 7d_15C | 0.748816 | no |
| 7d_25C | 7d_30C | 0.641898 | no |
| 7d_25C | 10d_25C | 0.229627 | no |
| 7d_15C | 7d_30C | 0.923211 | no |
| 7d_15C | 10d_25C | 0.101580 | no |
| 7d_30C | 10d_25C | 0.066960 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1337.t1 MAAPVLPLQQVKLASLPSTQLTPEQQYWRTFKNPLLIPSPANGPVNLITQPSVPSSAAAFPSLTQPPDVFTVTTG ARVQIYSIRTRKLLRTLTRFDDTVRGTDVRPDGRVLVAGDDTGSVQVFDVKSRAILKTWKDHKLPVWVTKFSPSD PTAVLTASDDRTVRLWDLPSQTSARTFVGHTDYVRSGAFMPGSMASSGLVVSGSYDRTVRLWDPRVGNRAAMTFK MGAPIETILPMPAGTTVLAAADNKIAVLDIVAGKPLHMIQSHQKTVTALALASNGERLLSGALDGHMKVFETTGW NPVSGSKYPSPILSLRAITSGTEYEDKHIAVGMQSGLLSIKTRLSGQQKIKERERRKEMAALLEGKLEEHDREVA KKKKTRGSGWEKRLRGRDFIGEGVEIVIEGQDRKKRKREQPWENDLRKARYSVALDQVLSSADKTSQLTLLTALR HRSALRASLKDRDEVTLQPVLQWVYKNIREPRLVDLSVEVAMNLLDIYSGNLGQSVQVDKMVERLHRRVRDEVEM AQQAWQTKGMLDMLKAT* |
| Coding | >Pro_DTO377G3_2|g1337.t1 ATGGCGGCGCCCGTCCTGCCTCTGCAGCAGGTCAAGCTCGCCTCGTTACCCTCGACGCAGCTAACGCCCGAGCAA CAATACTGGCGAACATTCAAAAACCCGCTCCTGATCCCGTCACCGGCCAATGGACCGGTCAATCTCATCACTCAG CCCTCCGTTCCTTCCTCTGCTGCGGCATTCCCCTCTCTCACACAACCGCCCGATGTCTTTACTGTGACAACAGGC GCACGAGTCCAGATCTATTCAATTCGCACACGGAAACTCCTGCGGACACTTACACGGTTTGACGACACCGTGCGC GGTACTGACGTTCGTCCCGATGGACGTGTCTTGGTTGCAGGTGACGACACCGGTTCCGTGCAAGTTTTCGATGTC AAATCGCGCGCCATCCTCAAGACGTGGAAGGATCACAAGCTGCCTGTGTGGGTGACCAAGTTCTCTCCTAGCGAC CCTACAGCGGTCCTCACAGCCAGTGATGACCGTACAGTGCGGTTGTGGGACTTGCCGTCGCAAACCAGTGCGCGC ACCTTTGTCGGCCACACCGATTACGTGCGCAGCGGTGCATTCATGCCTGGCTCTATGGCTTCTTCTGGTCTGGTG GTTTCAGGTTCTTACGATCGGACTGTTCGACTGTGGGATCCTCGAGTTGGAAACCGTGCCGCTATGACGTTCAAG ATGGGTGCGCCGATTGAGACTATTCTGCCTATGCCCGCCGGAACTACAGTTTTGGCTGCGGCCGATAACAAGATT GCGGTGCTGGATATTGTGGCTGGTAAGCCGCTGCACATGATCCAGAGCCATCAAAAGACTGTCACTGCCCTTGCG CTGGCCTCTAATGGTGAGCGATTGCTCAGTGGTGCCCTCGATGGACACATGAAGGTCTTTGAGACCACTGGGTGG AACCCCGTCTCCGGATCCAAATACCCATCACCCATTCTCTCTCTCCGCGCGATCACTTCCGGAACAGAATACGAG GATAAGCACATTGCTGTTGGTATGCAGTCAGGTCTTCTGTCTATCAAGACCCGACTATCTGGCCAACAGAAGATC AAGGAGCGAGAACGCCGGAAGGAAATGGCAGCTCTGCTGGAGGGCAAATTGGAGGAGCACGACCGGGAAGTCGCT AAGAAGAAGAAGACCCGTGGCTCTGGATGGGAAAAGCGTCTACGTGGACGCGATTTCATCGGAGAAGGTGTGGAG ATTGTCATTGAGGGCCAGGACCGCAAGAAGCGTAAGAGAGAACAGCCTTGGGAGAACGATCTCCGTAAGGCACGC TACTCTGTTGCGTTGGACCAGGTCCTCAGCTCGGCTGACAAGACTTCGCAACTCACACTGCTTACGGCCCTGCGC CACCGCTCCGCCCTCCGTGCCTCGCTGAAGGACCGCGATGAAGTCACCCTCCAGCCTGTGCTGCAGTGGGTTTAC AAGAACATCCGTGAACCCCGCCTGGTCGATCTTAGCGTCGAGGTCGCCATGAACCTTCTCGATATCTACTCCGGA AACCTGGGCCAGTCGGTACAGGTCGACAAGATGGTGGAGCGTCTGCACCGCCGGGTGCGTGACGAAGTGGAGATG GCCCAACAAGCGTGGCAAACAAAGGGAATGCTTGACATGTTGAAGGCGACCTGA |
| Transcript | >Pro_DTO377G3_2|g1337.t1 ATGGCGGCGCCCGTCCTGCCTCTGCAGCAGGTCAAGCTCGCCTCGTTACCCTCGACGCAGCTAACGCCCGAGCAA CAATACTGGCGAACATTCAAAAACCCGCTCCTGATCCCGTCACCGGCCAATGGACCGGTCAATCTCATCACTCAG CCCTCCGTTCCTTCCTCTGCTGCGGCATTCCCCTCTCTCACACAACCGCCCGATGTCTTTACTGTGACAACAGGC GCACGAGTCCAGATCTATTCAATTCGCACACGGAAACTCCTGCGGACACTTACACGGTTTGACGACACCGTGCGC GGTACTGACGTTCGTCCCGATGGACGTGTCTTGGTTGCAGGTGACGACACCGGTTCCGTGCAAGTTTTCGATGTC AAATCGCGCGCCATCCTCAAGACGTGGAAGGATCACAAGCTGCCTGTGTGGGTGACCAAGTTCTCTCCTAGCGAC CCTACAGCGGTCCTCACAGCCAGTGATGACCGTACAGTGCGGTTGTGGGACTTGCCGTCGCAAACCAGTGCGCGC ACCTTTGTCGGCCACACCGATTACGTGCGCAGCGGTGCATTCATGCCTGGCTCTATGGCTTCTTCTGGTCTGGTG GTTTCAGGTTCTTACGATCGGACTGTTCGACTGTGGGATCCTCGAGTTGGAAACCGTGCCGCTATGACGTTCAAG ATGGGTGCGCCGATTGAGACTATTCTGCCTATGCCCGCCGGAACTACAGTTTTGGCTGCGGCCGATAACAAGATT GCGGTGCTGGATATTGTGGCTGGTAAGCCGCTGCACATGATCCAGAGCCATCAAAAGACTGTCACTGCCCTTGCG CTGGCCTCTAATGGTGAGCGATTGCTCAGTGGTGCCCTCGATGGACACATGAAGGTCTTTGAGACCACTGGGTGG AACCCCGTCTCCGGATCCAAATACCCATCACCCATTCTCTCTCTCCGCGCGATCACTTCCGGAACAGAATACGAG GATAAGCACATTGCTGTTGGTATGCAGTCAGGTCTTCTGTCTATCAAGACCCGACTATCTGGCCAACAGAAGATC AAGGAGCGAGAACGCCGGAAGGAAATGGCAGCTCTGCTGGAGGGCAAATTGGAGGAGCACGACCGGGAAGTCGCT AAGAAGAAGAAGACCCGTGGCTCTGGATGGGAAAAGCGTCTACGTGGACGCGATTTCATCGGAGAAGGTGTGGAG ATTGTCATTGAGGGCCAGGACCGCAAGAAGCGTAAGAGAGAACAGCCTTGGGAGAACGATCTCCGTAAGGCACGC TACTCTGTTGCGTTGGACCAGGTCCTCAGCTCGGCTGACAAGACTTCGCAACTCACACTGCTTACGGCCCTGCGC CACCGCTCCGCCCTCCGTGCCTCGCTGAAGGACCGCGATGAAGTCACCCTCCAGCCTGTGCTGCAGTGGGTTTAC AAGAACATCCGTGAACCCCGCCTGGTCGATCTTAGCGTCGAGGTCGCCATGAACCTTCTCGATATCTACTCCGGA AACCTGGGCCAGTCGGTACAGGTCGACAAGATGGTGGAGCGTCTGCACCGCCGGGTGCGTGACGAAGTGGAGATG GCCCAACAAGCGTGGCAAACAAAGGGAATGCTTGACATGTTGAAGGCGACCTGA |
| Gene | >Pro_DTO377G3_2|g1337.t1 ATGGCGGCGCCCGTCCTGCCTCTGCAGCAGGTCAAGCTCGCCTCGTTACCCTCGACGCAGCTAACGCCCGAGCAA CAATACTGGCGAACATTCAAAAACCCGCTCCTGATCCCGTCACCGGCCAATGGACCGGTCAATCTCATCACTCAG CCCTCCGTTCCTTCCTCTGCTGCGGCATTCCCCTCTCTCACACAACCGCCCGATGTCTTTACTGTGACAACAGGC GCACGAGTCCAGATCTATTCAATTCGCACACGGAAACTCCTGCGGACACTTACACGGTTTGACGACACCGTGCGC GGTACTGACGTTCGTCCCGATGGACGTGTCTTGGTTGCAGGTGACGACACCGGTTCCGTGCAAGTTTTCGATGTC AAATCGCGCGCCATCCTCAAGACGTGGAAGGATCACAAGCTGCCTGTGTGGGTGACCAAGTTCTCTCCTAGCGAC CCTACAGCGGTCCTCACAGCCAGTGATGACCGTACAGTGCGGTTGTGGGACTTGCCGTCGCAAACCAGTGCGCGC ACCTTTGTCGGCCACACCGATTACGTGCGCAGCGGTGCATTCATGCCTGGCTCTATGGCTTCTTCTGGTCTGGTG GTTTCAGGTTCTTACGATCGGACTGTTCGACTGTGGGATCCTCGAGTTGGAAACCGTGCCGCTATGACGTTCAAG ATGGGTGCGCCGATTGAGACTATTCTGCCTATGCCCGCCGGAACTACAGTTTTGGCTGCGGCCGATAACAAGATT GCGGTGCTGGATATTGTGGCTGGTAAGCCGCTGCACATGATCCAGAGCCATCAAAAGACTGTCACTGCCCTTGCG CTGGCCTCTAATGGTGAGCGATTGCTCAGTGGTGCCCTCGATGGACACATGAAGGTCTTTGAGACCACTGGGTGG AACCCCGTCTCCGGATCCAAATACCCATCACCCATTCTCTCTCTCCGCGCGATCACTTCCGGAACAGAATACGAG GATAAGCACATTGCTGTTGGTATGCAGTCAGGTCTTCTGTCTATCAAGACCCGACTATCTGGCCAACAGAAGATC AAGGAGCGAGAACGCCGGAAGGAAATGGCAGCTCTGCTGGAGGGCAAATTGGAGGAGCACGACCGGGAAGTCGCT AAGAAGAAGAAGACCCGTGGCTCTGGATGGGAAAAGCGTCTACGTGGACGCGATTTCATCGGAGAAGGTGTGGAG ATTGTCATTGAGGGCCAGGACCGCAAGAAGCGTAAGAGAGAACAGCCTTGGGAGAACGATCTCCGTAAGGCACGC TACTCTGTTGCGTTGGACCAGGTCCTCAGCTCGGCTGACAAGACTTCGCAACTCACACTGCTTACGGCCCTGCGC CACCGCTCCGCCCTCCGTGCCTCGCTGAAGGACCGCGATGAAGTCACCCTCCAGCCTGTGCTGCAGTGGGTTTAC AAGAACATCCGTGAACCCCGCCTGGTCGATCTTAGCGTCGAGGTCGCCATGAACCTTCTCGATATCTACTCCGGA AACCTGGGCCAGTCGGTACAGGTCGACAAGATGGTGGAGCGTCTGCACCGCCGGGTGCGTGACGAAGTGGAGATG GCCCAACAAGCGTGGCAAACAAAGGGAATGCTTGACATGTTGAAGGCGACCTGA |