Fungal Genomics

at Utrecht University

General Properties

Protein ID	Pro_DTO377G3_2\|g1316.t1
Gene name
Location	scaffold_01:3453442..3454180
Strand	+
Gene length (bp)	738
Transcript length (bp)	666
Coding sequence length (bp)	666
Protein length (aa)	222

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00096	zf-C2H2	Zinc finger, C2H2 type	5.6E-05	183	207

GO

GO Term	Description	Terminal node
GO:0003676	nucleic acid binding	Yes
GO:0097159	organic cyclic compound binding	No
GO:1901363	heterocyclic compound binding	No
GO:0005488	binding	No
GO:0003674	molecular_function	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 70	0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class (based on PFAM domains)
C2H2 zinc finger

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Pro_DTO377G3_2\|g1316.t1 MTHASSNDHLESFPVENYGVPHSIAYAQNTPQGTLHYLEQDLPFQSSVYGLPWALNDFDLNMPITSAQANIESLT GSVRDNASPFGAENTTNSAWMDCDSSALDGYQQGLFSLPAGEPLNETPCEGSPTDDRTSRRRRSKPNAKSSTGPV TCGWEGCTYTLPFTHVISLWRHIKDKHIFPDAFKCPSPQCGKAYGRKDKLQRHLRSHADAEGRGKCRSCHT*
Coding	>Pro_DTO377G3_2\|g1316.t1 ATGACACACGCTTCTTCCAACGACCATCTCGAATCTTTCCCTGTTGAGAATTATGGTGTACCTCACAGTATAGCC TATGCTCAAAATACACCCCAAGGCACACTTCACTATCTCGAACAGGACCTCCCATTTCAAAGTTCTGTCTATGGT CTTCCATGGGCCTTGAATGACTTCGACCTAAACATGCCAATTACATCGGCACAAGCCAACATCGAGTCTCTTACT GGATCTGTTAGAGACAACGCCTCCCCATTCGGAGCAGAGAACACAACGAATAGTGCCTGGATGGACTGTGACAGC TCTGCTTTGGATGGCTATCAGCAGGGGCTCTTTTCGCTCCCAGCGGGAGAACCATTGAATGAGACACCCTGTGAG GGCAGTCCGACTGATGACCGAACGTCTCGTAGGCGTCGCTCTAAACCCAACGCCAAGAGCAGCACTGGTCCTGTC ACATGTGGTTGGGAAGGTTGCACATACACACTCCCGTTCACTCATGTGATATCGTTGTGGCGGCATATCAAGGAC AAGCACATATTCCCTGATGCGTTCAAGTGTCCCTCTCCACAATGTGGAAAGGCATATGGTCGAAAGGACAAGTTG CAGCGGCATTTGCGATCGCATGCAGACGCGGAAGGTAGAGGTAAATGTCGTTCGTGCCATACATGA
Transcript	>Pro_DTO377G3_2\|g1316.t1 ATGACACACGCTTCTTCCAACGACCATCTCGAATCTTTCCCTGTTGAGAATTATGGTGTACCTCACAGTATAGCC TATGCTCAAAATACACCCCAAGGCACACTTCACTATCTCGAACAGGACCTCCCATTTCAAAGTTCTGTCTATGGT CTTCCATGGGCCTTGAATGACTTCGACCTAAACATGCCAATTACATCGGCACAAGCCAACATCGAGTCTCTTACT GGATCTGTTAGAGACAACGCCTCCCCATTCGGAGCAGAGAACACAACGAATAGTGCCTGGATGGACTGTGACAGC TCTGCTTTGGATGGCTATCAGCAGGGGCTCTTTTCGCTCCCAGCGGGAGAACCATTGAATGAGACACCCTGTGAG GGCAGTCCGACTGATGACCGAACGTCTCGTAGGCGTCGCTCTAAACCCAACGCCAAGAGCAGCACTGGTCCTGTC ACATGTGGTTGGGAAGGTTGCACATACACACTCCCGTTCACTCATGTGATATCGTTGTGGCGGCATATCAAGGAC AAGCACATATTCCCTGATGCGTTCAAGTGTCCCTCTCCACAATGTGGAAAGGCATATGGTCGAAAGGACAAGTTG CAGCGGCATTTGCGATCGCATGCAGACGCGGAAGGTAGAGGTAAATGTCGTTCGTGCCATACATGA
Gene	>Pro_DTO377G3_2\|g1316.t1 ATGACACACGCTTCTTCCAACGACCATCTCGAATCTTTCCCTGTTGAGAATTATGGTGTACCTCACAGTATAGCC TATGCTCAAAATACACCCCAAGGCACACTTCACTATCTCGAACAGGACCTCCCATTTCAAAGTTCTGTCTATGGT CTTCCATGGGCCTTGAATGACTTCGACCTAAACATGCCAATTACATCGGCACAAGCCAACATCGAGTCTCTTACT GGATCTGTTAGAGACAACGCCTCCCCATTCGGAGCAGAGAACACAACGAATAGTGCCTGGATGGACTGTGACAGC TCTGCTTTGGATGGCTATCAGCAGGGGCTCTTTTCGCTCCCAGCGGGAGAACCATTGAATGAGACACCCTGTGAG GGCAGTCCGACTGATGACCGAACGTCTCGTAGGCGTCGCTCTAAACCCAACGCCAAGTGAGTTCTTCCGATACAG ATCTCTACCCCTATCCCATATCTGTGTTTATCTAATCAATCAATCTTCCAAAGGAGCAGCACTGGTCCTGTCACA TGTGGTTGGGAAGGTTGCACATACACACTCCCGTTCACTCATGTGATATCGTTGTGGCGGCATATCAAGGACAAG CACATATTCCCTGATGCGTTCAAGTGTCCCTCTCCACAATGTGGAAAGGCATATGGTCGAAAGGACAAGTTGCAG CGGCATTTGCGATCGCATGCAGACGCGGAAGGTAGAGGTAAATGTCGTTCGTGCCATACATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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