© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1307.t1 |
| Gene name | |
| Location | scaffold_01:3435367..3436733 |
| Strand | + |
| Gene length (bp) | 1366 |
| Transcript length (bp) | 1119 |
| Coding sequence length (bp) | 1119 |
| Protein length (aa) | 373 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00160 | Pro_isomerase | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 6.9E-49 | 11 | 172 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0000413 | protein peptidyl-prolyl isomerization | Yes |
| GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | Yes |
| GO:0003674 | molecular_function | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0019538 | protein metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0036211 | protein modification process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0018208 | peptidyl-proline modification | No |
| GO:0003824 | catalytic activity | No |
| GO:0043412 | macromolecule modification | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0016853 | isomerase activity | No |
| GO:0018193 | peptidyl-amino acid modification | No |
| GO:0016859 | cis-trans isomerase activity | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 107.33 | 65.26 | 149.41 |
| 5d_25C | Five days - 25 degrees Celsius | 141.07 | 86.60 | 195.53 |
| 7d_25C | Seven days - 25 degrees Celsius | 128.00 | 78.38 | 177.62 |
| 10d_25C | Ten days - 25 degrees Celsius | 222.46 | 134.89 | 310.02 |
| 7d_15C | Seven days - 15 degrees Celsius | 101.81 | 61.91 | 141.72 |
| 7d_30C | Seven days - 30 degrees Celsius | 167.24 | 102.68 | 231.80 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.228731 | no |
| 3d_25C | 7d_25C | 0.491565 | no |
| 3d_25C | 7d_15C | 0.869670 | no |
| 3d_25C | 7d_30C | 0.030233 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.731767 | no |
| 5d_25C | 7d_15C | 0.135029 | no |
| 5d_25C | 7d_30C | 0.494403 | no |
| 5d_25C | 10d_25C | 0.022940 | yes |
| 7d_25C | 7d_15C | 0.334221 | no |
| 7d_25C | 7d_30C | 0.232034 | no |
| 7d_25C | 10d_25C | 0.004840 | yes |
| 7d_15C | 7d_30C | 0.014676 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.197987 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1307.t1 MAKPQRSRVFFDIQIGDGKPSRVAFELFNDVVPKTADNFRALCTGEKGIGTQGKELTYKGSIFHRVIKQFMIQGG DFTAFNGTGGESIYGEKFPDENFDLKHDRPFLLSMANSGPGTNGSQFFVTTVPTPHLDGKHVVFGEVINGKNVIR KIENMKTQSDKPIQDVTIVNCGELTGEDYENAAKRQADATGDPYEDFTEDHQGEELTAPLCFKIASDLKGFGNAA FKSGDLNLGLDKYQKGLRYLNEFPDPADNDPKELGEQMKALRFTLHSNSSLLGNKLQKYRQAQNWATYALQVADE AKVKDADRAKAYYRRAVAHEGLKEEDAALKDLHEAEKLAPGDAGIINEIAKVKKAVKDREAKDKAAAKKFFS* |
| Coding | >Pro_DTO377G3_2|g1307.t1 ATGGCGAAACCTCAGCGCTCTCGTGTCTTCTTTGACATTCAAATCGGTGACGGCAAGCCTAGCCGGGTTGCCTTT GAGCTGTTCAACGATGTCGTCCCCAAGACCGCGGACAACTTCCGAGCTTTGTGTACCGGCGAGAAGGGCATTGGC ACCCAGGGCAAGGAATTGACCTACAAAGGCTCAATTTTCCACCGTGTGATCAAGCAGTTCATGATTCAGGGTGGT GACTTCACCGCGTTCAACGGCACCGGCGGCGAGTCGATTTACGGCGAAAAGTTCCCCGACGAGAATTTCGACCTC AAGCATGACCGCCCCTTCCTGCTCTCCATGGCCAACTCCGGCCCCGGCACCAACGGCAGTCAATTCTTCGTCACC ACCGTTCCCACTCCCCACCTTGATGGCAAGCACGTCGTGTTCGGTGAGGTCATCAACGGCAAGAACGTAATTCGC AAGATCGAGAATATGAAGACCCAGTCCGACAAGCCCATCCAGGACGTGACCATCGTGAACTGCGGCGAGCTTACC GGCGAGGACTACGAGAACGCGGCCAAGCGCCAGGCGGACGCGACGGGCGACCCATACGAGGACTTCACCGAGGAC CACCAGGGCGAGGAGCTTACTGCGCCTCTCTGCTTCAAGATCGCTTCCGACCTCAAGGGTTTCGGAAACGCTGCT TTCAAGAGTGGCGATCTCAACCTGGGTCTCGACAAGTACCAGAAGGGTCTGCGCTATCTGAATGAGTTCCCCGAT CCCGCAGACAATGACCCCAAGGAGCTGGGCGAGCAGATGAAGGCACTCCGATTCACCCTGCACTCCAACTCTTCC CTGCTTGGTAACAAGCTCCAGAAGTACCGCCAGGCTCAGAACTGGGCCACATATGCGCTCCAAGTCGCCGATGAG GCTAAGGTTAAGGATGCTGATCGGGCCAAGGCTTACTACCGCCGCGCTGTTGCCCACGAGGGTCTGAAGGAGGAG GATGCTGCGCTGAAGGATCTGCACGAGGCAGAGAAGCTGGCTCCGGGCGATGCTGGTATTATCAACGAGATCGCC AAGGTCAAGAAGGCTGTCAAGGACCGGGAGGCCAAGGACAAGGCGGCTGCCAAGAAGTTCTTCTCTTAA |
| Transcript | >Pro_DTO377G3_2|g1307.t1 ATGGCGAAACCTCAGCGCTCTCGTGTCTTCTTTGACATTCAAATCGGTGACGGCAAGCCTAGCCGGGTTGCCTTT GAGCTGTTCAACGATGTCGTCCCCAAGACCGCGGACAACTTCCGAGCTTTGTGTACCGGCGAGAAGGGCATTGGC ACCCAGGGCAAGGAATTGACCTACAAAGGCTCAATTTTCCACCGTGTGATCAAGCAGTTCATGATTCAGGGTGGT GACTTCACCGCGTTCAACGGCACCGGCGGCGAGTCGATTTACGGCGAAAAGTTCCCCGACGAGAATTTCGACCTC AAGCATGACCGCCCCTTCCTGCTCTCCATGGCCAACTCCGGCCCCGGCACCAACGGCAGTCAATTCTTCGTCACC ACCGTTCCCACTCCCCACCTTGATGGCAAGCACGTCGTGTTCGGTGAGGTCATCAACGGCAAGAACGTAATTCGC AAGATCGAGAATATGAAGACCCAGTCCGACAAGCCCATCCAGGACGTGACCATCGTGAACTGCGGCGAGCTTACC GGCGAGGACTACGAGAACGCGGCCAAGCGCCAGGCGGACGCGACGGGCGACCCATACGAGGACTTCACCGAGGAC CACCAGGGCGAGGAGCTTACTGCGCCTCTCTGCTTCAAGATCGCTTCCGACCTCAAGGGTTTCGGAAACGCTGCT TTCAAGAGTGGCGATCTCAACCTGGGTCTCGACAAGTACCAGAAGGGTCTGCGCTATCTGAATGAGTTCCCCGAT CCCGCAGACAATGACCCCAAGGAGCTGGGCGAGCAGATGAAGGCACTCCGATTCACCCTGCACTCCAACTCTTCC CTGCTTGGTAACAAGCTCCAGAAGTACCGCCAGGCTCAGAACTGGGCCACATATGCGCTCCAAGTCGCCGATGAG GCTAAGGTTAAGGATGCTGATCGGGCCAAGGCTTACTACCGCCGCGCTGTTGCCCACGAGGGTCTGAAGGAGGAG GATGCTGCGCTGAAGGATCTGCACGAGGCAGAGAAGCTGGCTCCGGGCGATGCTGGTATTATCAACGAGATCGCC AAGGTCAAGAAGGCTGTCAAGGACCGGGAGGCCAAGGACAAGGCGGCTGCCAAGAAGTTCTTCTCTTAA |
| Gene | >Pro_DTO377G3_2|g1307.t1 ATGGCGAAACCTCAGCGTACGTTCAGTGCGGGGTCCATCTGCCCGCGGATGCAATAATTGAGTCGAGTCGCTGAC AAGCTCGTAGGCTCTCGTGTCTTCTTTGACATTCAAATCGGTGACGGCAAGCCTAGCCGGGTTGCCTTTGAGCTG GTAAGTTGCCCGCATCCTCTATATGCCGAGTCTGGATTGCATCTAACATCCGGGTGTTGCACAGTTCAACGATGG TACGACATGATTTTCTCCCTTGACATTTCGGACCTGACTAACAGCAACAGTCGTCCCCAAGACCGCGGACAACTT CCGAGCTTTGTGTACCGGCGAGAAGGGCATTGGCACCCAGGGCAAGGAATTGACCTACAAAGGTACGTCTACAAT ACCCCGCTCCCATCGCGCTGACGCCCACTAACCGCGGTGTCCCGATCTAGGCTCAATTTTCCACCGTGTGATCAA GCAGTTCATGATTCAGGGTGGTGACTTCACCGCGTTCAACGGCACCGGCGGCGAGTCGATTTACGGCGAAAAGTT CCCCGACGAGAATTTCGACCTCAAGCATGACCGCCCCTTCCTGCTCTCCATGGCCAACTCCGGCCCCGGCACCAA CGGCAGTCAATTCTTCGTCACCACCGTTCCCACTCCCCACCTTGATGGCAAGCACGTCGTGTTCGGTGAGGTCAT CAACGGCAAGAACGTAATTCGCAAGATCGAGAATATGAAGACCCAGTCCGACAAGCCCATCCAGGACGTGACCAT CGTGAACTGCGGCGAGCTTACCGGCGAGGACTACGAGAACGCGGCCAAGCGCCAGGCGGACGCGACGGGCGACCC ATACGAGGACTTCACCGAGGACCACCAGGGCGAGGAGCTTACTGCGCCTCTCTGCTTCAAGATCGCTTCCGACCT CAAGGGTTTCGGAAACGCTGCTTTCAAGAGTGGCGATCTCAACCTGGGTCTCGACAAGTACCAGAAGGGTCTGCG CTATCTGAATGAGTTCCCCGATCCCGCAGACAATGACCCCAAGGAGCTGGGCGAGCAGATGAAGGCACTCCGATT CACCCTGCACTCCAACTCTTCCCTGCTTGGTAACAAGCTCCAGAAGTACCGCCAGGCTCAGAACTGGGCCACATA TGCGCTCCAAGTCGCCGATGAGGCTAAGGTTAAGGATGCTGATCGGGCCAAGGCTTACTACCGCCGCGCTGTTGC CCACGAGGGTCTGAAGGAGGAGGATGCTGCGCTGAAGGATCTGCACGAGGCAGAGAAGCTGGCTCCGGGCGATGC TGGTATTATCAACGAGATCGCCAAGGTCAAGAAGGCTGTCAAGGACCGGGAGGCCAAGGACAAGGCGGCTGCCAA GAAGTTCTTCTCTTAA |