© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1296.t1 |
| Gene name | |
| Location | scaffold_01:3403404..3405191 |
| Strand | - |
| Gene length (bp) | 1787 |
| Transcript length (bp) | 1536 |
| Coding sequence length (bp) | 1536 |
| Protein length (aa) | 512 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07992 | Pyr_redox_2 | Pyridine nucleotide-disulphide oxidoreductase | 7.1E-69 | 47 | 373 |
| PF02852 | Pyr_redox_dim | Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain | 1.4E-41 | 392 | 501 |
| PF00070 | Pyr_redox | Pyridine nucleotide-disulphide oxidoreductase | 3.5E-19 | 219 | 291 |
| PF12831 | FAD_oxidored | FAD dependent oxidoreductase | 9.6E-11 | 48 | 188 |
| PF13450 | NAD_binding_8 | NAD(P)-binding Rossmann-like domain | 4.3E-05 | 51 | 86 |
| PF13738 | Pyr_redox_3 | Pyridine nucleotide-disulphide oxidoreductase | 1.7E-07 | 176 | 350 |
| PF01134 | GIDA | Glucose inhibited division protein A | 1.3E-07 | 48 | 189 |
| PF00890 | FAD_binding_2 | FAD binding domain | 8.7E-07 | 48 | 84 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0045454 | cell redox homeostasis | Yes |
| GO:0065008 | regulation of biological quality | No |
| GO:0008150 | biological_process | No |
| GO:0019725 | cellular homeostasis | No |
| GO:0042592 | homeostatic process | No |
| GO:0050789 | regulation of biological process | No |
| GO:0009987 | cellular process | No |
| GO:0050794 | regulation of cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0065007 | biological regulation | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 43 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 302.78 | 177.90 | 427.65 |
| 5d_25C | Five days - 25 degrees Celsius | 204.92 | 122.23 | 287.62 |
| 7d_25C | Seven days - 25 degrees Celsius | 162.47 | 98.24 | 226.70 |
| 10d_25C | Ten days - 25 degrees Celsius | 135.29 | 82.40 | 188.19 |
| 7d_15C | Seven days - 15 degrees Celsius | 226.15 | 134.85 | 317.44 |
| 7d_30C | Seven days - 30 degrees Celsius | 155.63 | 94.66 | 216.60 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.082307 | no |
| 3d_25C | 7d_25C | 0.001278 | yes |
| 3d_25C | 7d_15C | 0.222787 | no |
| 3d_25C | 7d_30C | 0.001278 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.351823 | no |
| 5d_25C | 7d_15C | 0.742637 | no |
| 5d_25C | 7d_30C | 0.241077 | no |
| 5d_25C | 10d_25C | 0.051825 | no |
| 7d_25C | 7d_15C | 0.145601 | no |
| 7d_25C | 7d_30C | 0.897239 | no |
| 7d_25C | 10d_25C | 0.464960 | no |
| 7d_15C | 7d_30C | 0.088157 | no |
| 7d_15C | 10d_25C | 0.010083 | yes |
| 7d_30C | 10d_25C | 0.598057 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1296.t1 MFRAVLPRASPRSAFRHAGSRAIPNNFVTPMIFIGHSKRGFASEADHDLVIIGGGVAGYVAAIKAGQEGLKTACI EKRGTLGGTCLNVGCIPSKSLLNNSHLYHQVLHDTKKRGIDVGDVKLNLTQMMKAKDTAVEGLTKGVEFLLKKNG AEYIKGTGSFVDANTVKVVLNDGGEKTLRAKNIIIATGSEATGFPGLNIDEKRIVSSTGALALAEVPKKMTVIGG GIIGLEMASVWSRLGAEVTVVEFLGQIGGPGMDAEISKQAQKILGKQGIKFKTNTKVMSGDDSGSTISLKVEAAK GGKEETLDADVVLVAIGRRPYTDGLNLEQVGIEKDERGRLIIDQEYRTKLPHVRVIGDCTFGPMLAHKAEEEAVA AIEYIKTGYGHVNYAAIPSVMYTHPEVAWVGQTEAEIKASGVKYNVGTFPFSANSRAKTNLDTEGLVKFIADAET DRILGVHIIGPGAGEMIAEATLAIEYGASSEDIARTCHAHPTLSEAFKEAAMATYSKAIHF* |
| Coding | >Pro_DTO377G3_2|g1296.t1 ATGTTCCGCGCCGTCTTGCCCCGGGCTTCGCCCCGGTCTGCCTTCCGCCATGCCGGCTCCAGGGCTATTCCCAAC AATTTCGTTACTCCCATGATCTTCATTGGCCACTCAAAACGTGGTTTCGCTTCTGAAGCAGATCACGACCTGGTC ATCATCGGTGGTGGTGTCGCCGGTTACGTTGCTGCTATCAAGGCCGGTCAAGAGGGTCTCAAGACCGCATGTATC GAGAAGCGCGGAACACTCGGCGGTACCTGTTTGAACGTCGGCTGTATCCCTTCTAAGTCTCTCCTCAACAACTCC CATCTCTACCACCAGGTCCTTCACGATACCAAGAAGCGTGGTATTGACGTTGGCGATGTCAAGCTCAACCTTACC CAGATGATGAAGGCCAAGGACACAGCTGTTGAAGGCCTGACTAAGGGTGTTGAGTTCCTGCTGAAGAAGAACGGC GCCGAGTACATCAAGGGTACCGGTTCTTTTGTTGATGCCAACACTGTTAAGGTCGTCCTCAACGACGGTGGTGAG AAGACCCTGCGTGCTAAGAACATCATCATCGCCACCGGCTCTGAAGCCACCGGCTTCCCCGGTTTGAACATTGAT GAGAAGCGCATTGTCTCAAGCACTGGTGCTTTGGCTCTCGCCGAGGTCCCCAAGAAGATGACCGTCATCGGCGGT GGTATCATCGGTCTTGAGATGGCTTCCGTATGGTCCCGTCTCGGCGCTGAGGTCACTGTTGTTGAGTTCCTCGGC CAGATCGGTGGCCCCGGCATGGACGCCGAGATCTCCAAGCAGGCCCAGAAGATCCTTGGCAAGCAGGGTATTAAA TTCAAGACCAACACCAAGGTCATGTCCGGCGATGACAGTGGTTCTACTATTTCCCTCAAAGTTGAGGCTGCCAAG GGTGGCAAGGAGGAGACATTGGACGCCGACGTTGTCCTGGTCGCTATTGGCCGTCGTCCCTACACCGATGGCCTG AACTTGGAGCAGGTTGGAATCGAGAAGGATGAGCGTGGCCGCCTGATTATCGACCAGGAGTACCGCACGAAGCTT CCCCACGTCCGTGTCATTGGTGACTGCACCTTCGGTCCCATGCTGGCCCACAAGGCCGAGGAGGAGGCCGTTGCC GCCATCGAATATATCAAGACCGGCTACGGCCACGTCAACTACGCTGCCATCCCCAGCGTCATGTACACCCACCCC GAGGTCGCTTGGGTTGGCCAGACTGAGGCTGAGATTAAGGCTTCCGGTGTCAAGTACAATGTCGGTACCTTCCCC TTCAGCGCCAACTCCCGCGCCAAGACCAACCTCGACACCGAGGGTCTTGTTAAGTTCATCGCCGATGCCGAGACC GACCGCATTCTCGGTGTCCACATCATCGGCCCCGGTGCCGGTGAGATGATTGCTGAGGCCACCCTCGCCATCGAG TACGGTGCTTCCTCCGAGGACATTGCCCGCACTTGCCACGCCCACCCCACTCTCTCCGAAGCCTTCAAGGAGGCT GCCATGGCCACCTACTCTAAGGCCATTCACTTCTAA |
| Transcript | >Pro_DTO377G3_2|g1296.t1 ATGTTCCGCGCCGTCTTGCCCCGGGCTTCGCCCCGGTCTGCCTTCCGCCATGCCGGCTCCAGGGCTATTCCCAAC AATTTCGTTACTCCCATGATCTTCATTGGCCACTCAAAACGTGGTTTCGCTTCTGAAGCAGATCACGACCTGGTC ATCATCGGTGGTGGTGTCGCCGGTTACGTTGCTGCTATCAAGGCCGGTCAAGAGGGTCTCAAGACCGCATGTATC GAGAAGCGCGGAACACTCGGCGGTACCTGTTTGAACGTCGGCTGTATCCCTTCTAAGTCTCTCCTCAACAACTCC CATCTCTACCACCAGGTCCTTCACGATACCAAGAAGCGTGGTATTGACGTTGGCGATGTCAAGCTCAACCTTACC CAGATGATGAAGGCCAAGGACACAGCTGTTGAAGGCCTGACTAAGGGTGTTGAGTTCCTGCTGAAGAAGAACGGC GCCGAGTACATCAAGGGTACCGGTTCTTTTGTTGATGCCAACACTGTTAAGGTCGTCCTCAACGACGGTGGTGAG AAGACCCTGCGTGCTAAGAACATCATCATCGCCACCGGCTCTGAAGCCACCGGCTTCCCCGGTTTGAACATTGAT GAGAAGCGCATTGTCTCAAGCACTGGTGCTTTGGCTCTCGCCGAGGTCCCCAAGAAGATGACCGTCATCGGCGGT GGTATCATCGGTCTTGAGATGGCTTCCGTATGGTCCCGTCTCGGCGCTGAGGTCACTGTTGTTGAGTTCCTCGGC CAGATCGGTGGCCCCGGCATGGACGCCGAGATCTCCAAGCAGGCCCAGAAGATCCTTGGCAAGCAGGGTATTAAA TTCAAGACCAACACCAAGGTCATGTCCGGCGATGACAGTGGTTCTACTATTTCCCTCAAAGTTGAGGCTGCCAAG GGTGGCAAGGAGGAGACATTGGACGCCGACGTTGTCCTGGTCGCTATTGGCCGTCGTCCCTACACCGATGGCCTG AACTTGGAGCAGGTTGGAATCGAGAAGGATGAGCGTGGCCGCCTGATTATCGACCAGGAGTACCGCACGAAGCTT CCCCACGTCCGTGTCATTGGTGACTGCACCTTCGGTCCCATGCTGGCCCACAAGGCCGAGGAGGAGGCCGTTGCC GCCATCGAATATATCAAGACCGGCTACGGCCACGTCAACTACGCTGCCATCCCCAGCGTCATGTACACCCACCCC GAGGTCGCTTGGGTTGGCCAGACTGAGGCTGAGATTAAGGCTTCCGGTGTCAAGTACAATGTCGGTACCTTCCCC TTCAGCGCCAACTCCCGCGCCAAGACCAACCTCGACACCGAGGGTCTTGTTAAGTTCATCGCCGATGCCGAGACC GACCGCATTCTCGGTGTCCACATCATCGGCCCCGGTGCCGGTGAGATGATTGCTGAGGCCACCCTCGCCATCGAG TACGGTGCTTCCTCCGAGGACATTGCCCGCACTTGCCACGCCCACCCCACTCTCTCCGAAGCCTTCAAGGAGGCT GCCATGGCCACCTACTCTAAGGCCATTCACTTCTAA |
| Gene | >Pro_DTO377G3_2|g1296.t1 ATGTTCCGCGCCGTCTTGCCCCGGGCTTCGCCCCGGTCTGCCTTCCGCCATGCCGGCTCCAGGGCTATTCCCAAC AATTTCGTTACTCCCATGATCTTCATTGGCCACTCAAAACGTGGTTTCGCTTCTGAAGCAGGTAAGTCGATGCTC ACATCGCCATCACGGAGTTCCCGGAGTACCCGGAGAGGTTCTGTTTTCTTGCCGGACGCGATTGCTGATATCCGC TTTCCCGAGCAATAGATCACGACCTGGTCATCATCGGTGGTGGTGTCGCCGGTTACGTTGCTGCTATCAAGGCCG GTCAAGAGGGTCTCAAGGTAAGAACCACTTCTCGCTAGGCTTTCCAATTTTTGATTAGGTCGGTCTTGCCGTCGC AATCCGCATACTAACTGAACACCCTGGCAGACCGCATGTATCGAGAAGCGCGGAACACTCGGCGGTACCTGTTTG AACGTCGGCTGTATCCCTTCTAAGTCTCTCCTCAACAACTCCCATCTCTACCACCAGGTCCTTCACGATACCAAG AAGCGTGGTATTGACGTTGGCGATGTCAAGCTCAACCTTACCCAGATGATGAAGGCCAAGGACACAGCTGTTGAA GGCCTGACTAAGGGTGTTGAGTTCCTGCTGAAGAAGAACGGCGCCGAGTACATCAAGGGTACCGGTTCTTTTGTT GATGCCAACACTGTTAAGGTCGTCCTCAACGACGGTGGTGAGAAGACCCTGCGTGCTAAGAACATCATCATCGCC ACCGGCTCTGAAGCCACCGGCTTCCCCGGTTTGAACATTGATGAGAAGCGCATTGTCTCAAGCACTGGTGCTTTG GCTCTCGCCGAGGTCCCCAAGAAGATGACCGTCATCGGCGGTGGTATCATCGGTCTTGAGATGGTATGTATTAAC TACGGAATGAGTTTCGAATGCTAGATCGTGCTAACATTGTGGTATAGGCTTCCGTATGGTCCCGTCTCGGCGCTG AGGTCACTGTTGTTGAGTTCCTCGGCCAGATCGGTGGCCCCGGCATGGACGCCGAGATCTCCAAGCAGGCCCAGA AGATCCTTGGCAAGCAGGGTATTAAATTCAAGACCAACACCAAGGTCATGTCCGGCGATGACAGTGGTTCTACTA TTTCCCTCAAAGTTGAGGCTGCCAAGGGTGGCAAGGAGGAGACATTGGACGCCGACGTTGTCCTGGTCGCTATTG GCCGTCGTCCCTACACCGATGGCCTGAACTTGGAGCAGGTTGGAATCGAGAAGGATGAGCGTGGCCGCCTGATTA TCGACCAGGAGTACCGCACGAAGCTTCCCCACGTCCGTGTCATTGGTGACTGCACCTTCGGTCCCATGCTGGCCC ACAAGGCCGAGGAGGAGGCCGTTGCCGCCATCGAATATATCAAGACCGGCTACGGCCACGTCAACTACGCTGCCA TCCCCAGCGTCATGTACACCCACCCCGAGGTCGCTTGGGTTGGCCAGACTGAGGCTGAGATTAAGGCTTCCGGTG TCAAGTACAATGTCGGTACCTTCCCCTTCAGCGCCAACTCCCGCGCCAAGACCAACCTCGACACCGAGGGTCTTG TTAAGTTCATCGCCGATGCCGAGACCGACCGCATTCTCGGTGTCCACATCATCGGCCCCGGTGCCGGTGAGATGA TTGCTGAGGCCACCCTCGCCATCGAGTACGGTGCTTCCTCCGAGGACATTGCCCGCACTTGCCACGCCCACCCCA CTCTCTCCGAAGCCTTCAAGGAGGCTGCCATGGCCACCTACTCTAAGGCCATTCACTTCTAA |