© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1280.t1 |
| Gene name | |
| Location | scaffold_01:3360957..3362689 |
| Strand | - |
| Gene length (bp) | 1732 |
| Transcript length (bp) | 1668 |
| Coding sequence length (bp) | 1668 |
| Protein length (aa) | 556 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00487 | FA_desaturase | Fatty acid desaturase | 1.1E-25 | 239 | 513 |
| PF00173 | Cyt-b5 | Cytochrome b5-like Heme/Steroid binding domain | 2.6E-11 | 29 | 86 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006629 | lipid metabolic process | Yes |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 233 | 255 | 22 |
| 2 | 270 | 292 | 22 |
| 3 | 352 | 374 | 22 |
| 4 | 384 | 406 | 22 |
| 5 | 418 | 440 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 36.16 | 21.24 | 51.08 |
| 5d_25C | Five days - 25 degrees Celsius | 34.09 | 19.81 | 48.36 |
| 7d_25C | Seven days - 25 degrees Celsius | 31.44 | 17.97 | 44.91 |
| 10d_25C | Ten days - 25 degrees Celsius | 25.78 | 14.22 | 37.34 |
| 7d_15C | Seven days - 15 degrees Celsius | 32.13 | 18.37 | 45.89 |
| 7d_30C | Seven days - 30 degrees Celsius | 36.05 | 20.99 | 51.10 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.862786 | no |
| 3d_25C | 7d_25C | 0.635619 | no |
| 3d_25C | 7d_15C | 0.699826 | no |
| 3d_25C | 7d_30C | 0.993676 | no |
| 3d_25C | 10d_25C | 0.167451 | no |
| 5d_25C | 7d_25C | 0.811002 | no |
| 5d_25C | 7d_15C | 0.867783 | no |
| 5d_25C | 7d_30C | 0.872275 | no |
| 5d_25C | 10d_25C | 0.280193 | no |
| 7d_25C | 7d_15C | 0.955968 | no |
| 7d_25C | 7d_30C | 0.642561 | no |
| 7d_25C | 10d_25C | 0.486720 | no |
| 7d_15C | 7d_30C | 0.708897 | no |
| 7d_15C | 10d_25C | 0.425730 | no |
| 7d_30C | 10d_25C | 0.171662 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1280.t1 MEKTASRPSRKDTLLTRRYIEGLIAEGKHVIIFEGRVLKVDPFIRYHPGGEKPIKHMVGRDATDEINALHSEEAR KRMHSYQIGRIEGTWINFRPPIQGGTFRAYAEDTCASDEDSTAQECSSGSSQDGSVPPSPIFDAVDSKSTVRQRK AAGSALTDQPQAKPAFLDARTREEIVLDTAKYPSLDTASQEEIKRKYRELNERIKAEGLYDCDYSCYFVECCRYT LFAGLSYMFLRMGWWATSAFFLGCFWHQLVFTAHDAGHMGITHNFHVDTLIGIFIADYLGGLSLGWWKRSHNVHH IVTNEPEHDPDIEHIPFFAISHRFLTSLRSTYYDRIMTFDAPARFLLKFQNYSYYPIMMLARFNLYVLSWEYLFK GQAPRRGPAWWHVWFELVGQVFFWTWFGYGVMYKTLPDASSRIIFLLVSHIVSSPLHVQITLSHFAMSTADLGVG ESFAQKMLRTTMDVDCPTWLDFFHGGLQFQAIHHLYPRIPRHNLRRTQKFVIEFCRDTGIPYAIFTFYDGNKEVI SRLGDVAKQVRLMEECRKSITEGGAFSDHH* |
| Coding | >Pro_DTO377G3_2|g1280.t1 ATGGAGAAGACCGCATCCCGACCGTCCCGGAAGGATACCCTCTTGACTCGACGATATATTGAAGGCCTGATAGCT GAGGGCAAGCATGTCATAATCTTCGAGGGCCGTGTCCTGAAGGTAGACCCATTCATCAGATATCATCCCGGAGGG GAGAAGCCAATCAAGCACATGGTGGGCAGGGATGCGACAGATGAGATCAACGCGCTACACTCCGAAGAAGCCCGC AAGCGCATGCACTCGTACCAGATTGGACGAATTGAAGGGACATGGATCAATTTCCGACCCCCGATCCAGGGCGGC ACGTTCCGTGCTTATGCCGAAGACACGTGCGCGAGTGATGAGGATTCAACAGCACAAGAATGCTCCAGTGGCTCC AGCCAAGATGGATCAGTTCCTCCCTCGCCGATATTCGATGCGGTCGACTCGAAATCCACAGTTCGTCAACGGAAA GCGGCCGGATCTGCTTTGACCGACCAACCTCAAGCCAAGCCTGCCTTCTTGGATGCGAGAACACGGGAGGAAATC GTCTTGGACACTGCCAAATACCCCTCCTTGGATACCGCAAGTCAGGAAGAGATCAAACGAAAATACCGCGAACTG AACGAGCGTATCAAGGCCGAGGGACTTTACGACTGCGACTACTCTTGTTACTTCGTTGAATGTTGTCGGTATACC CTTTTTGCCGGTCTTTCCTATATGTTCCTCCGCATGGGATGGTGGGCGACCTCGGCATTCTTCCTCGGCTGTTTC TGGCATCAGCTTGTTTTCACCGCCCATGATGCTGGTCATATGGGCATTACACACAATTTCCATGTGGATACCCTT ATTGGAATATTCATCGCAGACTATCTCGGAGGATTAAGTCTCGGGTGGTGGAAACGAAGCCACAACGTTCATCAC ATCGTGACCAATGAGCCAGAGCATGACCCGGATATCGAGCATATCCCATTCTTCGCTATCTCGCACCGCTTCCTC ACGAGCCTACGGAGTACCTATTACGATCGAATCATGACTTTCGATGCCCCGGCTCGGTTTCTGCTCAAATTCCAG AACTACTCTTACTACCCTATTATGATGCTCGCTCGGTTCAATCTGTATGTCTTGAGTTGGGAGTACCTATTCAAG GGCCAAGCTCCTAGAAGAGGCCCTGCTTGGTGGCATGTTTGGTTTGAGCTGGTCGGACAGGTCTTCTTTTGGACC TGGTTTGGCTACGGTGTGATGTACAAGACGCTTCCCGATGCAAGCAGCCGCATCATCTTCCTCCTCGTCTCACAT ATTGTTTCCTCACCACTACACGTTCAAATCACCTTATCCCACTTCGCTATGTCAACCGCCGACCTAGGAGTCGGT GAGTCCTTCGCGCAGAAGATGCTCCGTACCACTATGGACGTCGACTGCCCAACATGGCTGGATTTCTTCCACGGT GGCTTGCAATTCCAAGCCATTCACCATCTCTACCCGCGGATTCCGCGTCACAACCTACGTCGTACGCAGAAGTTT GTCATCGAGTTCTGCCGCGATACTGGTATCCCCTATGCTATCTTTACCTTCTATGATGGTAACAAGGAGGTTATC AGCCGGCTTGGTGACGTCGCGAAACAGGTCCGCCTCATGGAGGAGTGCCGCAAGTCCATTACCGAAGGCGGAGCC TTCTCAGATCACCACTGA |
| Transcript | >Pro_DTO377G3_2|g1280.t1 ATGGAGAAGACCGCATCCCGACCGTCCCGGAAGGATACCCTCTTGACTCGACGATATATTGAAGGCCTGATAGCT GAGGGCAAGCATGTCATAATCTTCGAGGGCCGTGTCCTGAAGGTAGACCCATTCATCAGATATCATCCCGGAGGG GAGAAGCCAATCAAGCACATGGTGGGCAGGGATGCGACAGATGAGATCAACGCGCTACACTCCGAAGAAGCCCGC AAGCGCATGCACTCGTACCAGATTGGACGAATTGAAGGGACATGGATCAATTTCCGACCCCCGATCCAGGGCGGC ACGTTCCGTGCTTATGCCGAAGACACGTGCGCGAGTGATGAGGATTCAACAGCACAAGAATGCTCCAGTGGCTCC AGCCAAGATGGATCAGTTCCTCCCTCGCCGATATTCGATGCGGTCGACTCGAAATCCACAGTTCGTCAACGGAAA GCGGCCGGATCTGCTTTGACCGACCAACCTCAAGCCAAGCCTGCCTTCTTGGATGCGAGAACACGGGAGGAAATC GTCTTGGACACTGCCAAATACCCCTCCTTGGATACCGCAAGTCAGGAAGAGATCAAACGAAAATACCGCGAACTG AACGAGCGTATCAAGGCCGAGGGACTTTACGACTGCGACTACTCTTGTTACTTCGTTGAATGTTGTCGGTATACC CTTTTTGCCGGTCTTTCCTATATGTTCCTCCGCATGGGATGGTGGGCGACCTCGGCATTCTTCCTCGGCTGTTTC TGGCATCAGCTTGTTTTCACCGCCCATGATGCTGGTCATATGGGCATTACACACAATTTCCATGTGGATACCCTT ATTGGAATATTCATCGCAGACTATCTCGGAGGATTAAGTCTCGGGTGGTGGAAACGAAGCCACAACGTTCATCAC ATCGTGACCAATGAGCCAGAGCATGACCCGGATATCGAGCATATCCCATTCTTCGCTATCTCGCACCGCTTCCTC ACGAGCCTACGGAGTACCTATTACGATCGAATCATGACTTTCGATGCCCCGGCTCGGTTTCTGCTCAAATTCCAG AACTACTCTTACTACCCTATTATGATGCTCGCTCGGTTCAATCTGTATGTCTTGAGTTGGGAGTACCTATTCAAG GGCCAAGCTCCTAGAAGAGGCCCTGCTTGGTGGCATGTTTGGTTTGAGCTGGTCGGACAGGTCTTCTTTTGGACC TGGTTTGGCTACGGTGTGATGTACAAGACGCTTCCCGATGCAAGCAGCCGCATCATCTTCCTCCTCGTCTCACAT ATTGTTTCCTCACCACTACACGTTCAAATCACCTTATCCCACTTCGCTATGTCAACCGCCGACCTAGGAGTCGGT GAGTCCTTCGCGCAGAAGATGCTCCGTACCACTATGGACGTCGACTGCCCAACATGGCTGGATTTCTTCCACGGT GGCTTGCAATTCCAAGCCATTCACCATCTCTACCCGCGGATTCCGCGTCACAACCTACGTCGTACGCAGAAGTTT GTCATCGAGTTCTGCCGCGATACTGGTATCCCCTATGCTATCTTTACCTTCTATGATGGTAACAAGGAGGTTATC AGCCGGCTTGGTGACGTCGCGAAACAGGTCCGCCTCATGGAGGAGTGCCGCAAGTCCATTACCGAAGGCGGAGCC TTCTCAGATCACCACTGA |
| Gene | >Pro_DTO377G3_2|g1280.t1 ATGGAGAAGACCGCATCCCGACCGTCCCGGAAGGATACCCTCTTGACTCGACGATATATTGAAGGCCTGATAGCT GAGGGCAAGCATGTCATAATCTTCGAGGGCCGTGTCCTGAAGGTAGACCCATTCATCAGATATCATCCCGGAGGG GAGAAGCCAATCAAGCACATGGTGGGCAGGGATGCGACAGATGAGATCAACGCGTATGTTTTGGAACGGCAAACA CCACCACCTTTGATCAGTCTAATTGACACCGGCCTCGTATAGGCTACACTCCGAAGAAGCCCGCAAGCGCATGCA CTCGTACCAGATTGGACGAATTGAAGGGACATGGATCAATTTCCGACCCCCGATCCAGGGCGGCACGTTCCGTGC TTATGCCGAAGACACGTGCGCGAGTGATGAGGATTCAACAGCACAAGAATGCTCCAGTGGCTCCAGCCAAGATGG ATCAGTTCCTCCCTCGCCGATATTCGATGCGGTCGACTCGAAATCCACAGTTCGTCAACGGAAAGCGGCCGGATC TGCTTTGACCGACCAACCTCAAGCCAAGCCTGCCTTCTTGGATGCGAGAACACGGGAGGAAATCGTCTTGGACAC TGCCAAATACCCCTCCTTGGATACCGCAAGTCAGGAAGAGATCAAACGAAAATACCGCGAACTGAACGAGCGTAT CAAGGCCGAGGGACTTTACGACTGCGACTACTCTTGTTACTTCGTTGAATGTTGTCGGTATACCCTTTTTGCCGG TCTTTCCTATATGTTCCTCCGCATGGGATGGTGGGCGACCTCGGCATTCTTCCTCGGCTGTTTCTGGCATCAGCT TGTTTTCACCGCCCATGATGCTGGTCATATGGGCATTACACACAATTTCCATGTGGATACCCTTATTGGAATATT CATCGCAGACTATCTCGGAGGATTAAGTCTCGGGTGGTGGAAACGAAGCCACAACGTTCATCACATCGTGACCAA TGAGCCAGAGCATGACCCGGATATCGAGCATATCCCATTCTTCGCTATCTCGCACCGCTTCCTCACGAGCCTACG GAGTACCTATTACGATCGAATCATGACTTTCGATGCCCCGGCTCGGTTTCTGCTCAAATTCCAGAACTACTCTTA CTACCCTATTATGATGCTCGCTCGGTTCAATCTGTATGTCTTGAGTTGGGAGTACCTATTCAAGGGCCAAGCTCC TAGAAGAGGCCCTGCTTGGTGGCATGTTTGGTTTGAGCTGGTCGGACAGGTCTTCTTTTGGACCTGGTTTGGCTA CGGTGTGATGTACAAGACGCTTCCCGATGCAAGCAGCCGCATCATCTTCCTCCTCGTCTCACATATTGTTTCCTC ACCACTACACGTTCAAATCACCTTATCCCACTTCGCTATGTCAACCGCCGACCTAGGAGTCGGTGAGTCCTTCGC GCAGAAGATGCTCCGTACCACTATGGACGTCGACTGCCCAACATGGCTGGATTTCTTCCACGGTGGCTTGCAATT CCAAGCCATTCACCATCTCTACCCGCGGATTCCGCGTCACAACCTACGTCGTACGCAGAAGTTTGTCATCGAGTT CTGCCGCGATACTGGTATCCCCTATGCTATCTTTACCTTCTATGATGGTAACAAGGAGGTTATCAGCCGGCTTGG TGACGTCGCGAAACAGGTCCGCCTCATGGAGGAGTGCCGCAAGTCCATTACCGAAGGCGGAGCCTTCTCAGATCA CCACTGA |