© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1277.t1 |
| Gene name | |
| Location | scaffold_01:3355220..3357241 |
| Strand | + |
| Gene length (bp) | 2021 |
| Transcript length (bp) | 1635 |
| Coding sequence length (bp) | 1635 |
| Protein length (aa) | 545 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF18044 | zf-CCCH_4 | CCCH-type zinc finger | 8.9E-08 | 3 | 23 |
| PF00642 | zf-CCCH | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 2.0E-06 | 2 | 23 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046872 | metal ion binding | Yes |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0043169 | cation binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 13 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 13.54 | 6.39 | 20.68 |
| 5d_25C | Five days - 25 degrees Celsius | 14.63 | 7.04 | 22.22 |
| 7d_25C | Seven days - 25 degrees Celsius | 15.84 | 7.76 | 23.93 |
| 10d_25C | Ten days - 25 degrees Celsius | 14.68 | 7.07 | 22.30 |
| 7d_15C | Seven days - 15 degrees Celsius | 9.77 | 4.02 | 15.51 |
| 7d_30C | Seven days - 30 degrees Celsius | 14.32 | 6.86 | 21.78 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.850908 | no |
| 3d_25C | 7d_25C | 0.662861 | no |
| 3d_25C | 7d_15C | 0.323665 | no |
| 3d_25C | 7d_30C | 0.897374 | no |
| 3d_25C | 10d_25C | 0.843767 | no |
| 5d_25C | 7d_25C | 0.847024 | no |
| 5d_25C | 7d_15C | 0.204629 | no |
| 5d_25C | 7d_30C | 0.964801 | no |
| 5d_25C | 10d_25C | 0.994202 | no |
| 7d_25C | 7d_15C | 0.103585 | no |
| 7d_25C | 7d_30C | 0.793751 | no |
| 7d_25C | 10d_25C | 0.849490 | no |
| 7d_15C | 7d_30C | 0.228923 | no |
| 7d_15C | 10d_25C | 0.197189 | no |
| 7d_30C | 10d_25C | 0.957467 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1277.t1 MVVCNFFQQGRCKFGDRCKFEHPGKPTAGPSGNRFGALSGGFGGQNQTQRVADPVVKASEIKQDLTAGQGRPEWI FSAYAPHRDVARQLFGGAHRERSMEEMRLRHYELAAAGNLNEAVQEASSLWQECVQQMEISLNDLNGAVKYIVDG KNEHPNRLDIIEGKTQTVNQAPAPFGQPSPFGQAAPTPSIGPAPGAFGAPSSTFGQPSGVGQSVGFGRASAPAQP SGFGQNSALGSSAFGQTSILGGQSAFGKTPFGQPALAQPGVNPSPFGKPSALGGAAPFGAPSAASPFTQVAQNQP AGGGFGQSAGQPAPSPFGPTAGQSGPSPFGQPAANTSPFGQPSAPAGAAPFGQPSAPTGTTPFGQPSAPAAAAPF GVPSAPSPFTQVPQNQPAAGGFGQSAVQPAPSPFGQPAVQGVPVQSTNAGPRAYIKIENPQDLNPLPQLEGETRH NPSTKQLVMWKGRPVKYINEHPCYLHPQDNITFVRINFPNGPPDAAGLKDAHGKPEEYTPEVVEAYQFFLQNGYF KDGNIPAVPPKQEWLSFDF* |
| Coding | >Pro_DTO377G3_2|g1277.t1 ATGGTGGTATGCAACTTTTTTCAGCAGGGTCGCTGCAAGTTTGGAGATCGCTGCAAGTTTGAGCACCCTGGCAAA CCGACTGCTGGTCCATCGGGGAATCGATTCGGGGCTTTATCAGGAGGATTTGGAGGTCAAAACCAGACTCAACGA GTAGCCGACCCAGTAGTGAAGGCAAGCGAAATCAAGCAAGATTTGACCGCTGGCCAGGGCCGTCCGGAATGGATC TTCTCCGCATATGCGCCCCACAGAGATGTTGCGCGCCAGCTGTTCGGCGGAGCTCACCGCGAACGCAGCATGGAA GAGATGCGCTTGCGCCATTATGAATTAGCAGCAGCCGGTAACCTGAATGAAGCGGTCCAAGAAGCCTCGTCTCTG TGGCAAGAATGCGTGCAACAGATGGAAATCTCACTGAATGACCTGAATGGTGCCGTCAAATATATCGTTGACGGC AAGAATGAACATCCTAATCGACTGGACATTATCGAGGGAAAGACCCAGACTGTTAACCAAGCTCCAGCACCATTT GGCCAACCCTCTCCATTCGGCCAGGCCGCGCCTACACCCAGCATTGGTCCTGCACCTGGAGCGTTCGGTGCTCCT TCCTCGACATTTGGCCAGCCATCAGGAGTTGGGCAGTCAGTCGGATTCGGTAGGGCTTCAGCACCAGCGCAACCG TCTGGCTTCGGACAGAATTCTGCCTTGGGTAGCTCAGCCTTCGGCCAAACCTCCATCTTGGGAGGTCAGTCTGCT TTCGGCAAAACACCTTTCGGCCAGCCAGCTCTTGCTCAGCCAGGAGTTAACCCAAGCCCATTCGGTAAGCCGTCA GCTCTGGGAGGCGCGGCCCCATTCGGGGCTCCATCTGCCGCTTCACCTTTCACCCAAGTAGCTCAGAACCAGCCT GCTGGTGGTGGGTTTGGCCAGAGCGCCGGACAACCTGCTCCGTCGCCTTTCGGTCCAACCGCTGGACAATCTGGC CCGTCTCCATTTGGCCAGCCAGCTGCCAACACGAGCCCATTTGGTCAACCCTCAGCCCCGGCAGGCGCTGCTCCA TTCGGTCAACCTTCAGCCCCGACAGGCACTACGCCATTCGGCCAACCGTCAGCTCCGGCAGCCGCCGCCCCATTT GGTGTTCCATCTGCCCCTTCTCCCTTCACTCAGGTACCCCAGAATCAGCCTGCTGCGGGTGGGTTTGGCCAGAGT GCTGTACAACCTGCTCCGTCTCCCTTCGGCCAGCCTGCAGTTCAAGGCGTGCCGGTGCAGAGTACCAACGCCGGC CCTCGTGCATACATCAAAATCGAAAATCCTCAAGACCTCAACCCTCTTCCACAACTGGAGGGCGAAACTCGACAT AACCCATCCACTAAACAACTAGTGATGTGGAAGGGCCGCCCTGTCAAGTATATCAACGAGCATCCGTGCTACCTT CACCCGCAAGACAACATCACCTTTGTCCGGATCAACTTCCCTAACGGGCCACCTGATGCTGCTGGTTTGAAAGAC GCACACGGAAAGCCCGAGGAATACACACCAGAAGTCGTTGAGGCATATCAGTTTTTCCTTCAGAATGGCTACTTC AAGGACGGCAACATTCCCGCAGTACCTCCCAAGCAGGAGTGGCTCAGTTTCGACTTTTAA |
| Transcript | >Pro_DTO377G3_2|g1277.t1 ATGGTGGTATGCAACTTTTTTCAGCAGGGTCGCTGCAAGTTTGGAGATCGCTGCAAGTTTGAGCACCCTGGCAAA CCGACTGCTGGTCCATCGGGGAATCGATTCGGGGCTTTATCAGGAGGATTTGGAGGTCAAAACCAGACTCAACGA GTAGCCGACCCAGTAGTGAAGGCAAGCGAAATCAAGCAAGATTTGACCGCTGGCCAGGGCCGTCCGGAATGGATC TTCTCCGCATATGCGCCCCACAGAGATGTTGCGCGCCAGCTGTTCGGCGGAGCTCACCGCGAACGCAGCATGGAA GAGATGCGCTTGCGCCATTATGAATTAGCAGCAGCCGGTAACCTGAATGAAGCGGTCCAAGAAGCCTCGTCTCTG TGGCAAGAATGCGTGCAACAGATGGAAATCTCACTGAATGACCTGAATGGTGCCGTCAAATATATCGTTGACGGC AAGAATGAACATCCTAATCGACTGGACATTATCGAGGGAAAGACCCAGACTGTTAACCAAGCTCCAGCACCATTT GGCCAACCCTCTCCATTCGGCCAGGCCGCGCCTACACCCAGCATTGGTCCTGCACCTGGAGCGTTCGGTGCTCCT TCCTCGACATTTGGCCAGCCATCAGGAGTTGGGCAGTCAGTCGGATTCGGTAGGGCTTCAGCACCAGCGCAACCG TCTGGCTTCGGACAGAATTCTGCCTTGGGTAGCTCAGCCTTCGGCCAAACCTCCATCTTGGGAGGTCAGTCTGCT TTCGGCAAAACACCTTTCGGCCAGCCAGCTCTTGCTCAGCCAGGAGTTAACCCAAGCCCATTCGGTAAGCCGTCA GCTCTGGGAGGCGCGGCCCCATTCGGGGCTCCATCTGCCGCTTCACCTTTCACCCAAGTAGCTCAGAACCAGCCT GCTGGTGGTGGGTTTGGCCAGAGCGCCGGACAACCTGCTCCGTCGCCTTTCGGTCCAACCGCTGGACAATCTGGC CCGTCTCCATTTGGCCAGCCAGCTGCCAACACGAGCCCATTTGGTCAACCCTCAGCCCCGGCAGGCGCTGCTCCA TTCGGTCAACCTTCAGCCCCGACAGGCACTACGCCATTCGGCCAACCGTCAGCTCCGGCAGCCGCCGCCCCATTT GGTGTTCCATCTGCCCCTTCTCCCTTCACTCAGGTACCCCAGAATCAGCCTGCTGCGGGTGGGTTTGGCCAGAGT GCTGTACAACCTGCTCCGTCTCCCTTCGGCCAGCCTGCAGTTCAAGGCGTGCCGGTGCAGAGTACCAACGCCGGC CCTCGTGCATACATCAAAATCGAAAATCCTCAAGACCTCAACCCTCTTCCACAACTGGAGGGCGAAACTCGACAT AACCCATCCACTAAACAACTAGTGATGTGGAAGGGCCGCCCTGTCAAGTATATCAACGAGCATCCGTGCTACCTT CACCCGCAAGACAACATCACCTTTGTCCGGATCAACTTCCCTAACGGGCCACCTGATGCTGCTGGTTTGAAAGAC GCACACGGAAAGCCCGAGGAATACACACCAGAAGTCGTTGAGGCATATCAGTTTTTCCTTCAGAATGGCTACTTC AAGGACGGCAACATTCCCGCAGTACCTCCCAAGCAGGAGTGGCTCAGTTTCGACTTTTAA |
| Gene | >Pro_DTO377G3_2|g1277.t1 ATGGTGGTATGCAACTTTTTTCAGCAGGGTCGCTGCAAGTTTGGAGGTATGAATCTCTTGTGTGTAGAGAAATCA AGGCACTAATATATCTGAAGATCGCTGCAAGTTTGAGCACCCTGGCAAACCGACTGCTGGTCCATCGGGGAATCG ATTCGGGGCTTTATCAGGAGGATTTGGAGGTACGTTCAATTGGATTGTTCTTATTCAGCGTTGCTCGATGCGGAG AGTCCATTTATTGGACATATATTGTGTCGTGAGATTGATTGTTCGATCTCGATGTTCATTTGTTCCCCCCATCTC TTTCTCTTGCTCTTACCCTTCTACCCCTGCTGGGCTTACCCCAAACTCCTTCGAGTCCGAAGTGCAACGAATGTT TCCCTGTTCAAAACTATGATCAATCCTGTGAACCACATGCCCCCCCTTCGGGCTAGTCTTCTTCCAAACCCTAAC GACAAAATTACGACAGGTCAAAACCAGACTCAACGAGTAGCCGAGTAAGTCGCATCCCCAGCGCCTTCAGTGGAT TCAAACTGACAACAGGCAGCCCAGTAGTGAAGGCAAGCGAAATCAAGCAAGATTTGACCGCTGGCCAGGGCCGTC CGGAATGGATCTTCTCCGCATATGCGCCCCACAGAGATGTTGCGCGCCAGCTGTTCGGCGGAGCTCACCGCGAAC GCAGCATGGAAGAGATGCGCTTGCGCCATTATGAATTAGCAGCAGCCGGTAACCTGAATGAAGCGGTCCAAGAAG CCTCGTCTCTGTGGCAAGAATGCGTGCAACAGATGGAAATCTCACTGAATGACCTGAATGGTGCCGTCAAATATA TCGTTGACGGCAAGAATGAACATCCTAATCGACTGGACATTATCGAGGGAAAGACCCAGACTGTTAACCAAGCTC CAGCACCATTTGGCCAACCCTCTCCATTCGGCCAGGCCGCGCCTACACCCAGCATTGGTCCTGCACCTGGAGCGT TCGGTGCTCCTTCCTCGACATTTGGCCAGCCATCAGGAGTTGGGCAGTCAGTCGGATTCGGTAGGGCTTCAGCAC CAGCGCAACCGTCTGGCTTCGGACAGAATTCTGCCTTGGGTAGCTCAGCCTTCGGCCAAACCTCCATCTTGGGAG GTCAGTCTGCTTTCGGCAAAACACCTTTCGGCCAGCCAGCTCTTGCTCAGCCAGGAGTTAACCCAAGCCCATTCG GTAAGCCGTCAGCTCTGGGAGGCGCGGCCCCATTCGGGGCTCCATCTGCCGCTTCACCTTTCACCCAAGTAGCTC AGAACCAGCCTGCTGGTGGTGGGTTTGGCCAGAGCGCCGGACAACCTGCTCCGTCGCCTTTCGGTCCAACCGCTG GACAATCTGGCCCGTCTCCATTTGGCCAGCCAGCTGCCAACACGAGCCCATTTGGTCAACCCTCAGCCCCGGCAG GCGCTGCTCCATTCGGTCAACCTTCAGCCCCGACAGGCACTACGCCATTCGGCCAACCGTCAGCTCCGGCAGCCG CCGCCCCATTTGGTGTTCCATCTGCCCCTTCTCCCTTCACTCAGGTACCCCAGAATCAGCCTGCTGCGGGTGGGT TTGGCCAGAGTGCTGTACAACCTGCTCCGTCTCCCTTCGGCCAGCCTGCAGTTCAAGGCGTGCCGGTGCAGAGTA CCAACGCCGGCCCTCGTGCATACATCAAAATCGAAAATCCTCAAGACCTCAACCCTCTTCCACAACTGGAGGGCG AAACTCGACATAACCCATCCACTAAACAACTAGTGATGTGGAAGGGCCGCCCTGTCAAGTATATCAACGAGCATC CGTGCTACCTTCACCCGCAAGACAACATCACCTTTGTCCGGATCAACTTCCCTAACGGGCCACCTGATGCTGCTG GTTTGAAAGACGCACACGGAAAGCCCGAGGAATACACACCAGAAGTCGTTGAGGCATATCAGTTTTTCCTTCAGA ATGGCTACTTCAAGGACGGCAACATTCCCGCAGTACCTCCCAAGCAGGAGTGGCTCAGTTTCGACTTTTAA |