© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1271.t1 |
| Gene name | |
| Location | scaffold_01:3339861..3341015 |
| Strand | - |
| Gene length (bp) | 1154 |
| Transcript length (bp) | 1101 |
| Coding sequence length (bp) | 1101 |
| Protein length (aa) | 367 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00722 | Glyco_hydro_16 | Glycosyl hydrolases family 16 | 4.5E-41 | 53 | 222 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | Yes |
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 19 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 297 | 319 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 62.60 | 37.17 | 88.03 |
| 5d_25C | Five days - 25 degrees Celsius | 26.74 | 13.40 | 40.08 |
| 7d_25C | Seven days - 25 degrees Celsius | 34.59 | 17.57 | 51.61 |
| 10d_25C | Ten days - 25 degrees Celsius | 9.90 | 3.19 | 16.60 |
| 7d_15C | Seven days - 15 degrees Celsius | 32.71 | 15.92 | 49.50 |
| 7d_30C | Seven days - 30 degrees Celsius | 13.65 | 5.71 | 21.60 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.000700 | yes |
| 3d_25C | 7d_25C | 0.017204 | yes |
| 3d_25C | 7d_15C | 0.010735 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.426476 | no |
| 5d_25C | 7d_15C | 0.565517 | no |
| 5d_25C | 7d_30C | 0.018034 | yes |
| 5d_25C | 10d_25C | 0.003197 | yes |
| 7d_25C | 7d_15C | 0.897086 | no |
| 7d_25C | 7d_30C | 0.000700 | yes |
| 7d_25C | 10d_25C | 0.000700 | yes |
| 7d_15C | 7d_30C | 0.001804 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.425523 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1271.t1 MFLSRIAVLAALASYATAQTSTDCDPTKKTCPADPALGTEHTWDFNTTLDEKVWSMTTGTYVYGDDGANFTLSKE GESTLLQSTFYIFFGVVESHVKMAKGGGLVSSVVLESDDLDEIDWEWVGYNTSEVQSNFFGKGNDSTFDRGGFHY VPNADTEFHNYTTYWAKDKLQWWIDGEMVRELEYSEKSTLYGKNYPQTPCRVQFSLWPAGQKSAAQGTIEWAGGL VDWDSAPFTMTLGKLRVKDFHTGKEYTYGDQTGSWESIKVVDGNSTVLTELNKPEAKSLSEKWDDLGEGAHIGVY VGAAAAGAIGIAALLFLCLRQRRKGRLENALGNNPVPLNRDEMQNFQKDWRQSEWKLNGGYQQVHN* |
| Coding | >Pro_DTO377G3_2|g1271.t1 ATGTTCCTCTCCCGCATTGCCGTTCTGGCAGCTTTGGCTAGCTACGCCACCGCTCAAACATCGACTGACTGTGAC CCAACGAAGAAGACATGTCCTGCGGATCCCGCCTTGGGCACCGAACACACATGGGACTTCAACACAACCTTGGAC GAAAAGGTCTGGTCTATGACGACCGGAACATACGTGTACGGTGACGACGGAGCCAATTTCACTCTCTCCAAGGAA GGAGAGTCCACGCTCCTACAGTCGACCTTCTATATATTCTTCGGTGTCGTCGAATCTCACGTCAAGATGGCCAAG GGCGGAGGTCTAGTCAGCAGTGTAGTCTTGGAGTCCGACGATCTAGATGAGATTGATTGGGAATGGGTGGGATAC AACACTAGCGAAGTGCAGTCCAACTTCTTTGGCAAGGGTAACGATAGCACCTTCGATCGTGGCGGATTTCACTAT GTGCCGAACGCGGACACAGAGTTCCATAACTACACCACATACTGGGCGAAGGATAAACTGCAATGGTGGATTGAT GGCGAGATGGTTCGCGAACTCGAATACTCCGAGAAGTCCACCCTGTACGGCAAAAACTACCCACAGACACCCTGC CGTGTCCAATTCAGTCTCTGGCCTGCTGGTCAGAAAAGCGCAGCGCAGGGTACTATCGAGTGGGCTGGTGGCCTT GTCGACTGGGATTCCGCGCCTTTCACTATGACCCTTGGCAAGTTGCGTGTGAAGGATTTCCACACTGGCAAGGAG TACACCTACGGGGACCAGACAGGTTCATGGGAGAGCATCAAAGTGGTGGACGGAAACTCCACCGTACTGACCGAA CTGAACAAGCCCGAGGCCAAGTCTCTATCAGAAAAATGGGATGATCTCGGCGAGGGAGCTCACATTGGAGTCTAC GTTGGCGCCGCCGCCGCCGGTGCCATTGGTATCGCAGCGCTGCTGTTCTTATGCCTGCGCCAGCGCCGCAAGGGC CGTCTCGAGAACGCATTAGGCAACAACCCGGTTCCTCTTAACCGCGATGAGATGCAGAACTTCCAGAAAGACTGG AGGCAGAGCGAGTGGAAGTTGAACGGTGGTTATCAGCAGGTCCACAACTAG |
| Transcript | >Pro_DTO377G3_2|g1271.t1 ATGTTCCTCTCCCGCATTGCCGTTCTGGCAGCTTTGGCTAGCTACGCCACCGCTCAAACATCGACTGACTGTGAC CCAACGAAGAAGACATGTCCTGCGGATCCCGCCTTGGGCACCGAACACACATGGGACTTCAACACAACCTTGGAC GAAAAGGTCTGGTCTATGACGACCGGAACATACGTGTACGGTGACGACGGAGCCAATTTCACTCTCTCCAAGGAA GGAGAGTCCACGCTCCTACAGTCGACCTTCTATATATTCTTCGGTGTCGTCGAATCTCACGTCAAGATGGCCAAG GGCGGAGGTCTAGTCAGCAGTGTAGTCTTGGAGTCCGACGATCTAGATGAGATTGATTGGGAATGGGTGGGATAC AACACTAGCGAAGTGCAGTCCAACTTCTTTGGCAAGGGTAACGATAGCACCTTCGATCGTGGCGGATTTCACTAT GTGCCGAACGCGGACACAGAGTTCCATAACTACACCACATACTGGGCGAAGGATAAACTGCAATGGTGGATTGAT GGCGAGATGGTTCGCGAACTCGAATACTCCGAGAAGTCCACCCTGTACGGCAAAAACTACCCACAGACACCCTGC CGTGTCCAATTCAGTCTCTGGCCTGCTGGTCAGAAAAGCGCAGCGCAGGGTACTATCGAGTGGGCTGGTGGCCTT GTCGACTGGGATTCCGCGCCTTTCACTATGACCCTTGGCAAGTTGCGTGTGAAGGATTTCCACACTGGCAAGGAG TACACCTACGGGGACCAGACAGGTTCATGGGAGAGCATCAAAGTGGTGGACGGAAACTCCACCGTACTGACCGAA CTGAACAAGCCCGAGGCCAAGTCTCTATCAGAAAAATGGGATGATCTCGGCGAGGGAGCTCACATTGGAGTCTAC GTTGGCGCCGCCGCCGCCGGTGCCATTGGTATCGCAGCGCTGCTGTTCTTATGCCTGCGCCAGCGCCGCAAGGGC CGTCTCGAGAACGCATTAGGCAACAACCCGGTTCCTCTTAACCGCGATGAGATGCAGAACTTCCAGAAAGACTGG AGGCAGAGCGAGTGGAAGTTGAACGGTGGTTATCAGCAGGTCCACAACTAG |
| Gene | >Pro_DTO377G3_2|g1271.t1 ATGTTCCTCTCCCGCATTGCCGTTCTGGCAGCTTTGGCTAGCTACGCCACCGCTCAAACATCGACTGACTGTGAC CCAACGAAGAAGACATGTCCTGCGGATCCCGCCTTGGGCACCGAACACACATGGGACTTCAACACAACCTTGGAC GAAAAGGTCTGGTCTATGACGACCGGAACATACGTGTACGGTGACGACGGAGCCAATTTCACTCTCTCCAAGGAA GGAGAGTCCACGCTCCTACAGTCGACCTTCTATATATTCTTCGGTGTCGTCGAATCTCACGTCAAGATGGCCAAG GGCGGAGGTCTAGTCAGCAGTGTAGTCTTGGAGTCCGACGATCTAGATGAGATTGATTGGGAATGGGTGGGATAC AACACTAGCGAAGTGCAGTCCAACTTCTTTGGCAAGGGTAACGATAGCACCTTCGATCGTGGCGGATTTCACTAT GTGCCGAACGCGGACACAGAGTTCCATAACTACACCACATACTGGGCGAAGGATAAACTGCAATGGTGGATTGAT GGCGAGATGGTTCGCGAACTCGAATACTCCGAGAAGTCCACCCTGTACGGCAAAAACTACCCACAGACACCCTGC CGTGTCCAATTCAGTCTCTGGCCTGCTGGTCAGAAAAGCGCAGCGCAGGGTACTATCGAGTGGGCTGGTGGCCTT GTCGACTGGGATTCCGCGCCTTTCACTATGACCCTTGGCAAGTTGCGTGTGAAGGATTTCCACACTGGCAAGGAG TACACCTACGGGGACCAGACAGGTTCATGGGAGAGCATCAAAGTGGTGGAGTAAGTGTGCCCAATCTAGAGCCAA TCAGGATATCACTAATGAGATGCAACAGCGGAAACTCCACCGTACTGACCGAACTGAACAAGCCCGAGGCCAAGT CTCTATCAGAAAAATGGGATGATCTCGGCGAGGGAGCTCACATTGGAGTCTACGTTGGCGCCGCCGCCGCCGGTG CCATTGGTATCGCAGCGCTGCTGTTCTTATGCCTGCGCCAGCGCCGCAAGGGCCGTCTCGAGAACGCATTAGGCA ACAACCCGGTTCCTCTTAACCGCGATGAGATGCAGAACTTCCAGAAAGACTGGAGGCAGAGCGAGTGGAAGTTGA ACGGTGGTTATCAGCAGGTCCACAACTAG |