Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g1265.t1
Gene name
Locationscaffold_01:3323332..3324255
Strand-
Gene length (bp)923
Transcript length (bp)873
Coding sequence length (bp)873
Protein length (aa) 291

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF06999 Suc_Fer-like Sucrase/ferredoxin-like 8.0E-68 53 279

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 12 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 5.31 1.30 9.32
5d_25C Five days - 25 degrees Celsius 3.87 0.74 7.00
7d_25C Seven days - 25 degrees Celsius 1.50 0.00 3.05
10d_25C Ten days - 25 degrees Celsius 1.18 0.00 2.51
7d_15C Seven days - 15 degrees Celsius 3.35 0.41 6.28
7d_30C Seven days - 30 degrees Celsius 3.02 0.42 5.61

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.539933 no
3d_25C 7d_25C 0.011688 yes
3d_25C 7d_15C 0.353337 no
3d_25C 7d_30C 0.231839 no
3d_25C 10d_25C 0.012303 yes
5d_25C 7d_25C 0.064169 no
5d_25C 7d_15C 0.823240 no
5d_25C 7d_30C 0.675828 no
5d_25C 10d_25C 0.046955 yes
7d_25C 7d_15C 0.135151 no
7d_25C 7d_30C 0.201629 no
7d_25C 10d_25C 0.769860 no
7d_15C 7d_30C 0.887156 no
7d_15C 10d_25C 0.088767 no
7d_30C 10d_25C 0.125964 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g1265.t1
MLRSLLSLGRAGTNDYLFPKVDPKTDGPECLNDCADCTVKFPSKVKVETSRPLYGDIKEFQTHVLVATGQSDWKE
KNVENTTGSLMEAFDGAKSDHGRIKVSASNLTPPEQPTTDESPTQATTVLILPSFTYVDSVTQKDVPDLIARYID
HPSDQQNGSPANGMNARACELDYVVLLCSHGRRDARCGITAPLIKRELERQLRPLGLDRDPDDSRVGGVGIFFVS
HVGGHKFSANVLIYRKKDQQMIWLARVRPEHCEGIVKYTILQGKVVHPESQLRGGFDRVKGLTSW*
Coding >Pro_DTO377G3_2|g1265.t1
ATGTTGCGTTCCTTGCTTTCCTTGGGCCGCGCGGGCACCAACGACTACCTCTTTCCTAAAGTGGATCCCAAAACG
GACGGCCCCGAATGTTTAAATGACTGCGCCGACTGCACAGTGAAGTTCCCGTCCAAAGTCAAAGTCGAAACTTCA
AGGCCTCTTTATGGCGATATCAAAGAATTCCAGACCCATGTTCTCGTCGCAACGGGGCAATCCGACTGGAAGGAG
AAGAATGTCGAAAACACGACAGGAAGCTTGATGGAAGCATTCGACGGGGCAAAATCAGACCACGGTCGTATCAAG
GTGTCAGCATCAAATCTCACCCCTCCAGAACAGCCAACTACAGACGAAAGTCCCACCCAAGCCACCACAGTACTA
ATCCTCCCGTCATTCACATACGTCGACTCCGTCACGCAAAAGGACGTCCCAGATCTGATAGCCAGATACATCGAT
CACCCCAGCGACCAGCAAAATGGCTCTCCCGCGAATGGAATGAACGCTCGAGCCTGTGAACTCGACTACGTGGTA
TTACTGTGCTCGCACGGACGCCGAGATGCGCGCTGTGGTATCACAGCGCCACTCATCAAGCGCGAGCTGGAGCGA
CAACTCCGTCCGCTGGGACTCGACCGGGATCCGGATGACTCCCGGGTCGGCGGGGTGGGCATCTTCTTCGTATCG
CATGTCGGCGGGCACAAGTTCTCTGCGAATGTTTTGATCTATCGCAAGAAGGACCAGCAGATGATTTGGCTTGCG
CGTGTGCGGCCTGAGCATTGCGAGGGCATTGTTAAGTACACTATTCTTCAGGGGAAGGTTGTTCATCCTGAGTCG
CAGTTGAGGGGTGGGTTTGATCGGGTGAAAGGGTTGACGAGTTGGTAA
Transcript >Pro_DTO377G3_2|g1265.t1
ATGTTGCGTTCCTTGCTTTCCTTGGGCCGCGCGGGCACCAACGACTACCTCTTTCCTAAAGTGGATCCCAAAACG
GACGGCCCCGAATGTTTAAATGACTGCGCCGACTGCACAGTGAAGTTCCCGTCCAAAGTCAAAGTCGAAACTTCA
AGGCCTCTTTATGGCGATATCAAAGAATTCCAGACCCATGTTCTCGTCGCAACGGGGCAATCCGACTGGAAGGAG
AAGAATGTCGAAAACACGACAGGAAGCTTGATGGAAGCATTCGACGGGGCAAAATCAGACCACGGTCGTATCAAG
GTGTCAGCATCAAATCTCACCCCTCCAGAACAGCCAACTACAGACGAAAGTCCCACCCAAGCCACCACAGTACTA
ATCCTCCCGTCATTCACATACGTCGACTCCGTCACGCAAAAGGACGTCCCAGATCTGATAGCCAGATACATCGAT
CACCCCAGCGACCAGCAAAATGGCTCTCCCGCGAATGGAATGAACGCTCGAGCCTGTGAACTCGACTACGTGGTA
TTACTGTGCTCGCACGGACGCCGAGATGCGCGCTGTGGTATCACAGCGCCACTCATCAAGCGCGAGCTGGAGCGA
CAACTCCGTCCGCTGGGACTCGACCGGGATCCGGATGACTCCCGGGTCGGCGGGGTGGGCATCTTCTTCGTATCG
CATGTCGGCGGGCACAAGTTCTCTGCGAATGTTTTGATCTATCGCAAGAAGGACCAGCAGATGATTTGGCTTGCG
CGTGTGCGGCCTGAGCATTGCGAGGGCATTGTTAAGTACACTATTCTTCAGGGGAAGGTTGTTCATCCTGAGTCG
CAGTTGAGGGGTGGGTTTGATCGGGTGAAAGGGTTGACGAGTTGGTAA
Gene >Pro_DTO377G3_2|g1265.t1
ATGTTGCGTTCCTTGCTTTCCTTGGGCCGCGCGGGCACCAACGACTACCTCTTTCCTAAAGTGGATCCCAAAACG
GACGGCCCCGAATGTTTAAATGACTGCGCCGACTGCACAGTGAAGTTCCCGTCCAAAGTCAAAGTCGAAACTTCA
AGGCCTCTTTATGGCGATATCAAAGAATTCCAGACCCATGTTCTCGTCGCAACGGGGCAATCCGACTGGAAGGAG
AAGAATGTCGAAAACACGACAGGAAGCTTGATGGAAGCATTCGACGGGGCAAAATCAGACCACGGTGTAAGCTTT
ATAATCAAAATGTAGCCTACCACCACTAACACCCGATCCAGCGTATCAAGGTGTCAGCATCAAATCTCACCCCTC
CAGAACAGCCAACTACAGACGAAAGTCCCACCCAAGCCACCACAGTACTAATCCTCCCGTCATTCACATACGTCG
ACTCCGTCACGCAAAAGGACGTCCCAGATCTGATAGCCAGATACATCGATCACCCCAGCGACCAGCAAAATGGCT
CTCCCGCGAATGGAATGAACGCTCGAGCCTGTGAACTCGACTACGTGGTATTACTGTGCTCGCACGGACGCCGAG
ATGCGCGCTGTGGTATCACAGCGCCACTCATCAAGCGCGAGCTGGAGCGACAACTCCGTCCGCTGGGACTCGACC
GGGATCCGGATGACTCCCGGGTCGGCGGGGTGGGCATCTTCTTCGTATCGCATGTCGGCGGGCACAAGTTCTCTG
CGAATGTTTTGATCTATCGCAAGAAGGACCAGCAGATGATTTGGCTTGCGCGTGTGCGGCCTGAGCATTGCGAGG
GCATTGTTAAGTACACTATTCTTCAGGGGAAGGTTGTTCATCCTGAGTCGCAGTTGAGGGGTGGGTTTGATCGGG
TGAAAGGGTTGACGAGTTGGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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