© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1265.t1 |
| Gene name | |
| Location | scaffold_01:3323332..3324255 |
| Strand | - |
| Gene length (bp) | 923 |
| Transcript length (bp) | 873 |
| Coding sequence length (bp) | 873 |
| Protein length (aa) | 291 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06999 | Suc_Fer-like | Sucrase/ferredoxin-like | 8.0E-68 | 53 | 279 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 5.31 | 1.30 | 9.32 |
| 5d_25C | Five days - 25 degrees Celsius | 3.87 | 0.74 | 7.00 |
| 7d_25C | Seven days - 25 degrees Celsius | 1.50 | 0.00 | 3.05 |
| 10d_25C | Ten days - 25 degrees Celsius | 1.18 | 0.00 | 2.51 |
| 7d_15C | Seven days - 15 degrees Celsius | 3.35 | 0.41 | 6.28 |
| 7d_30C | Seven days - 30 degrees Celsius | 3.02 | 0.42 | 5.61 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.539933 | no |
| 3d_25C | 7d_25C | 0.011688 | yes |
| 3d_25C | 7d_15C | 0.353337 | no |
| 3d_25C | 7d_30C | 0.231839 | no |
| 3d_25C | 10d_25C | 0.012303 | yes |
| 5d_25C | 7d_25C | 0.064169 | no |
| 5d_25C | 7d_15C | 0.823240 | no |
| 5d_25C | 7d_30C | 0.675828 | no |
| 5d_25C | 10d_25C | 0.046955 | yes |
| 7d_25C | 7d_15C | 0.135151 | no |
| 7d_25C | 7d_30C | 0.201629 | no |
| 7d_25C | 10d_25C | 0.769860 | no |
| 7d_15C | 7d_30C | 0.887156 | no |
| 7d_15C | 10d_25C | 0.088767 | no |
| 7d_30C | 10d_25C | 0.125964 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1265.t1 MLRSLLSLGRAGTNDYLFPKVDPKTDGPECLNDCADCTVKFPSKVKVETSRPLYGDIKEFQTHVLVATGQSDWKE KNVENTTGSLMEAFDGAKSDHGRIKVSASNLTPPEQPTTDESPTQATTVLILPSFTYVDSVTQKDVPDLIARYID HPSDQQNGSPANGMNARACELDYVVLLCSHGRRDARCGITAPLIKRELERQLRPLGLDRDPDDSRVGGVGIFFVS HVGGHKFSANVLIYRKKDQQMIWLARVRPEHCEGIVKYTILQGKVVHPESQLRGGFDRVKGLTSW* |
| Coding | >Pro_DTO377G3_2|g1265.t1 ATGTTGCGTTCCTTGCTTTCCTTGGGCCGCGCGGGCACCAACGACTACCTCTTTCCTAAAGTGGATCCCAAAACG GACGGCCCCGAATGTTTAAATGACTGCGCCGACTGCACAGTGAAGTTCCCGTCCAAAGTCAAAGTCGAAACTTCA AGGCCTCTTTATGGCGATATCAAAGAATTCCAGACCCATGTTCTCGTCGCAACGGGGCAATCCGACTGGAAGGAG AAGAATGTCGAAAACACGACAGGAAGCTTGATGGAAGCATTCGACGGGGCAAAATCAGACCACGGTCGTATCAAG GTGTCAGCATCAAATCTCACCCCTCCAGAACAGCCAACTACAGACGAAAGTCCCACCCAAGCCACCACAGTACTA ATCCTCCCGTCATTCACATACGTCGACTCCGTCACGCAAAAGGACGTCCCAGATCTGATAGCCAGATACATCGAT CACCCCAGCGACCAGCAAAATGGCTCTCCCGCGAATGGAATGAACGCTCGAGCCTGTGAACTCGACTACGTGGTA TTACTGTGCTCGCACGGACGCCGAGATGCGCGCTGTGGTATCACAGCGCCACTCATCAAGCGCGAGCTGGAGCGA CAACTCCGTCCGCTGGGACTCGACCGGGATCCGGATGACTCCCGGGTCGGCGGGGTGGGCATCTTCTTCGTATCG CATGTCGGCGGGCACAAGTTCTCTGCGAATGTTTTGATCTATCGCAAGAAGGACCAGCAGATGATTTGGCTTGCG CGTGTGCGGCCTGAGCATTGCGAGGGCATTGTTAAGTACACTATTCTTCAGGGGAAGGTTGTTCATCCTGAGTCG CAGTTGAGGGGTGGGTTTGATCGGGTGAAAGGGTTGACGAGTTGGTAA |
| Transcript | >Pro_DTO377G3_2|g1265.t1 ATGTTGCGTTCCTTGCTTTCCTTGGGCCGCGCGGGCACCAACGACTACCTCTTTCCTAAAGTGGATCCCAAAACG GACGGCCCCGAATGTTTAAATGACTGCGCCGACTGCACAGTGAAGTTCCCGTCCAAAGTCAAAGTCGAAACTTCA AGGCCTCTTTATGGCGATATCAAAGAATTCCAGACCCATGTTCTCGTCGCAACGGGGCAATCCGACTGGAAGGAG AAGAATGTCGAAAACACGACAGGAAGCTTGATGGAAGCATTCGACGGGGCAAAATCAGACCACGGTCGTATCAAG GTGTCAGCATCAAATCTCACCCCTCCAGAACAGCCAACTACAGACGAAAGTCCCACCCAAGCCACCACAGTACTA ATCCTCCCGTCATTCACATACGTCGACTCCGTCACGCAAAAGGACGTCCCAGATCTGATAGCCAGATACATCGAT CACCCCAGCGACCAGCAAAATGGCTCTCCCGCGAATGGAATGAACGCTCGAGCCTGTGAACTCGACTACGTGGTA TTACTGTGCTCGCACGGACGCCGAGATGCGCGCTGTGGTATCACAGCGCCACTCATCAAGCGCGAGCTGGAGCGA CAACTCCGTCCGCTGGGACTCGACCGGGATCCGGATGACTCCCGGGTCGGCGGGGTGGGCATCTTCTTCGTATCG CATGTCGGCGGGCACAAGTTCTCTGCGAATGTTTTGATCTATCGCAAGAAGGACCAGCAGATGATTTGGCTTGCG CGTGTGCGGCCTGAGCATTGCGAGGGCATTGTTAAGTACACTATTCTTCAGGGGAAGGTTGTTCATCCTGAGTCG CAGTTGAGGGGTGGGTTTGATCGGGTGAAAGGGTTGACGAGTTGGTAA |
| Gene | >Pro_DTO377G3_2|g1265.t1 ATGTTGCGTTCCTTGCTTTCCTTGGGCCGCGCGGGCACCAACGACTACCTCTTTCCTAAAGTGGATCCCAAAACG GACGGCCCCGAATGTTTAAATGACTGCGCCGACTGCACAGTGAAGTTCCCGTCCAAAGTCAAAGTCGAAACTTCA AGGCCTCTTTATGGCGATATCAAAGAATTCCAGACCCATGTTCTCGTCGCAACGGGGCAATCCGACTGGAAGGAG AAGAATGTCGAAAACACGACAGGAAGCTTGATGGAAGCATTCGACGGGGCAAAATCAGACCACGGTGTAAGCTTT ATAATCAAAATGTAGCCTACCACCACTAACACCCGATCCAGCGTATCAAGGTGTCAGCATCAAATCTCACCCCTC CAGAACAGCCAACTACAGACGAAAGTCCCACCCAAGCCACCACAGTACTAATCCTCCCGTCATTCACATACGTCG ACTCCGTCACGCAAAAGGACGTCCCAGATCTGATAGCCAGATACATCGATCACCCCAGCGACCAGCAAAATGGCT CTCCCGCGAATGGAATGAACGCTCGAGCCTGTGAACTCGACTACGTGGTATTACTGTGCTCGCACGGACGCCGAG ATGCGCGCTGTGGTATCACAGCGCCACTCATCAAGCGCGAGCTGGAGCGACAACTCCGTCCGCTGGGACTCGACC GGGATCCGGATGACTCCCGGGTCGGCGGGGTGGGCATCTTCTTCGTATCGCATGTCGGCGGGCACAAGTTCTCTG CGAATGTTTTGATCTATCGCAAGAAGGACCAGCAGATGATTTGGCTTGCGCGTGTGCGGCCTGAGCATTGCGAGG GCATTGTTAAGTACACTATTCTTCAGGGGAAGGTTGTTCATCCTGAGTCGCAGTTGAGGGGTGGGTTTGATCGGG TGAAAGGGTTGACGAGTTGGTAA |