© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1251.t1 |
| Gene name | |
| Location | scaffold_01:3289039..3290710 |
| Strand | + |
| Gene length (bp) | 1671 |
| Transcript length (bp) | 1671 |
| Coding sequence length (bp) | 1671 |
| Protein length (aa) | 557 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 2.7E-31 | 113 | 496 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 42 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 107 | 129 | 22 |
| 2 | 142 | 164 | 22 |
| 3 | 174 | 193 | 19 |
| 4 | 200 | 222 | 22 |
| 5 | 232 | 254 | 22 |
| 6 | 261 | 283 | 22 |
| 7 | 339 | 361 | 22 |
| 8 | 374 | 396 | 22 |
| 9 | 416 | 438 | 22 |
| 10 | 443 | 465 | 22 |
| 11 | 512 | 534 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 261.59 | 153.97 | 369.21 |
| 5d_25C | Five days - 25 degrees Celsius | 378.08 | 213.21 | 542.96 |
| 7d_25C | Seven days - 25 degrees Celsius | 337.27 | 188.84 | 485.69 |
| 10d_25C | Ten days - 25 degrees Celsius | 491.60 | 270.03 | 713.16 |
| 7d_15C | Seven days - 15 degrees Celsius | 448.34 | 235.26 | 661.42 |
| 7d_30C | Seven days - 30 degrees Celsius | 302.91 | 171.92 | 433.89 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.118193 | no |
| 3d_25C | 7d_25C | 0.332474 | no |
| 3d_25C | 7d_15C | 0.027278 | yes |
| 3d_25C | 7d_30C | 0.618959 | no |
| 3d_25C | 10d_25C | 0.004045 | yes |
| 5d_25C | 7d_25C | 0.720503 | no |
| 5d_25C | 7d_15C | 0.577164 | no |
| 5d_25C | 7d_30C | 0.410985 | no |
| 5d_25C | 10d_25C | 0.327473 | no |
| 7d_25C | 7d_15C | 0.302449 | no |
| 7d_25C | 7d_30C | 0.741301 | no |
| 7d_25C | 10d_25C | 0.136934 | no |
| 7d_15C | 7d_30C | 0.118550 | no |
| 7d_15C | 10d_25C | 0.797250 | no |
| 7d_30C | 10d_25C | 0.040199 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1251.t1 MHFHNRDSSFHSTDTAQNSPDSASYHENDKPPSSPSVELVPGQKGRLAGGKYLQPSTSHHEHFTTLDFDFPLTGT KAIVQGGKQYILIDYTFGDKENPFNWSPWKKALVSGLLCLMTLFIGLATTAYSSGITRMCADLGVSLELGQMGLF TFNMTCALAPLFLAPFCELAGRRIVYAGAYVGFSIMFIGLALGKNIATILVCRALLGLFGCVGTILVGGTFGDMY HPEDRAIPMASFSYVAILGTVAAPIYAGFIDETIGWRWIEGIQGLANVPLMLIIVFFFPETRGSMMLSKRAKILR SKTGDQRYVALNDLEAPNLKRMLYNSSVKAVKMLITEPVVFFFGLWISFAWFLTFLFLSVIPITYEEKKGWSEGV AGLPYIALCIGTTLGFMMHFLQIHKYNTVHKDKTDEEMRPEARLYGVMFGAVALPIGLFIYSFTQYAYVHWIGPM IGLGLITFGIFFIFESCYSFTSDCYGETSSSAIAGQGFMRNTLGAVSPLFASQFFHNVRSQYAGLILSIIAAFLT AIPYVLFVYGPAIRSRSKLASVPQRRPSSGL* |
| Coding | >Pro_DTO377G3_2|g1251.t1 ATGCATTTTCACAACAGAGACTCCTCCTTTCACTCGACAGATACCGCCCAGAATTCGCCGGATTCGGCGTCCTAT CACGAAAATGATAAACCTCCATCATCGCCATCTGTCGAGCTCGTTCCAGGTCAAAAGGGTCGACTAGCTGGTGGG AAGTATCTCCAACCTTCCACCTCCCACCATGAACACTTCACAACCCTTGATTTCGACTTTCCTTTAACTGGCACC AAAGCGATAGTCCAAGGTGGTAAGCAATATATCTTGATTGACTACACCTTTGGAGACAAAGAGAATCCATTCAAT TGGAGCCCTTGGAAGAAGGCATTAGTCTCAGGCCTCCTTTGTTTGATGACCCTTTTCATCGGCCTAGCGACTACT GCCTACAGCTCTGGTATCACCCGAATGTGTGCAGATCTCGGCGTCTCCTTGGAGCTCGGGCAAATGGGTCTGTTC ACCTTCAATATGACCTGCGCCTTGGCACCATTGTTCCTAGCACCTTTTTGCGAACTTGCTGGGCGACGCATTGTC TACGCGGGTGCATACGTGGGGTTCTCGATTATGTTTATTGGCCTTGCACTAGGCAAGAATATCGCAACTATTCTC GTATGCCGAGCGCTGCTAGGTCTATTCGGTTGTGTAGGGACTATTCTTGTCGGAGGTACCTTTGGCGACATGTAC CACCCCGAGGATCGAGCTATCCCTATGGCCTCGTTCTCGTATGTCGCAATTCTCGGTACCGTTGCTGCTCCAATC TACGCCGGCTTCATCGACGAGACAATTGGCTGGCGTTGGATTGAAGGAATCCAAGGTCTAGCGAATGTCCCTCTT ATGCTCATCATCGTATTCTTCTTTCCTGAGACTCGGGGCAGCATGATGCTTTCTAAAAGGGCCAAGATTCTACGT TCAAAGACGGGTGATCAACGCTATGTCGCTCTGAACGACCTCGAAGCACCTAATTTGAAGCGTATGCTATACAAC TCTTCCGTAAAAGCAGTAAAAATGCTTATTACGGAACCTGTTGTTTTCTTCTTCGGTCTTTGGATTAGCTTTGCT TGGTTCTTGACCTTTCTCTTCTTATCGGTGATCCCTATAACCTATGAAGAAAAGAAAGGCTGGAGCGAGGGCGTT GCCGGCCTCCCATACATCGCGCTCTGCATCGGCACGACCCTCGGCTTCATGATGCATTTCCTCCAAATTCACAAA TACAACACAGTCCATAAAGACAAGACCGATGAAGAAATGCGTCCGGAAGCCAGACTTTACGGTGTCATGTTTGGA GCCGTCGCGCTTCCAATCGGCCTGTTTATCTACTCCTTCACACAATACGCATATGTACATTGGATCGGGCCTATG ATCGGGCTTGGTCTGATTACATTTGGAATTTTCTTCATCTTCGAGTCGTGCTATAGCTTCACGTCGGATTGCTAC GGTGAAACTTCCTCTTCGGCGATCGCTGGACAGGGATTCATGAGGAATACGCTCGGCGCCGTGTCGCCTCTATTT GCTTCCCAGTTCTTTCATAATGTTCGCAGCCAATATGCAGGCCTGATTCTGTCGATCATAGCCGCTTTCTTGACT GCGATCCCTTATGTGTTGTTTGTTTATGGTCCGGCAATTCGATCCCGATCTAAGCTGGCGAGTGTGCCTCAGCGT CGGCCTAGCTCCGGTCTTTGA |
| Transcript | >Pro_DTO377G3_2|g1251.t1 ATGCATTTTCACAACAGAGACTCCTCCTTTCACTCGACAGATACCGCCCAGAATTCGCCGGATTCGGCGTCCTAT CACGAAAATGATAAACCTCCATCATCGCCATCTGTCGAGCTCGTTCCAGGTCAAAAGGGTCGACTAGCTGGTGGG AAGTATCTCCAACCTTCCACCTCCCACCATGAACACTTCACAACCCTTGATTTCGACTTTCCTTTAACTGGCACC AAAGCGATAGTCCAAGGTGGTAAGCAATATATCTTGATTGACTACACCTTTGGAGACAAAGAGAATCCATTCAAT TGGAGCCCTTGGAAGAAGGCATTAGTCTCAGGCCTCCTTTGTTTGATGACCCTTTTCATCGGCCTAGCGACTACT GCCTACAGCTCTGGTATCACCCGAATGTGTGCAGATCTCGGCGTCTCCTTGGAGCTCGGGCAAATGGGTCTGTTC ACCTTCAATATGACCTGCGCCTTGGCACCATTGTTCCTAGCACCTTTTTGCGAACTTGCTGGGCGACGCATTGTC TACGCGGGTGCATACGTGGGGTTCTCGATTATGTTTATTGGCCTTGCACTAGGCAAGAATATCGCAACTATTCTC GTATGCCGAGCGCTGCTAGGTCTATTCGGTTGTGTAGGGACTATTCTTGTCGGAGGTACCTTTGGCGACATGTAC CACCCCGAGGATCGAGCTATCCCTATGGCCTCGTTCTCGTATGTCGCAATTCTCGGTACCGTTGCTGCTCCAATC TACGCCGGCTTCATCGACGAGACAATTGGCTGGCGTTGGATTGAAGGAATCCAAGGTCTAGCGAATGTCCCTCTT ATGCTCATCATCGTATTCTTCTTTCCTGAGACTCGGGGCAGCATGATGCTTTCTAAAAGGGCCAAGATTCTACGT TCAAAGACGGGTGATCAACGCTATGTCGCTCTGAACGACCTCGAAGCACCTAATTTGAAGCGTATGCTATACAAC TCTTCCGTAAAAGCAGTAAAAATGCTTATTACGGAACCTGTTGTTTTCTTCTTCGGTCTTTGGATTAGCTTTGCT TGGTTCTTGACCTTTCTCTTCTTATCGGTGATCCCTATAACCTATGAAGAAAAGAAAGGCTGGAGCGAGGGCGTT GCCGGCCTCCCATACATCGCGCTCTGCATCGGCACGACCCTCGGCTTCATGATGCATTTCCTCCAAATTCACAAA TACAACACAGTCCATAAAGACAAGACCGATGAAGAAATGCGTCCGGAAGCCAGACTTTACGGTGTCATGTTTGGA GCCGTCGCGCTTCCAATCGGCCTGTTTATCTACTCCTTCACACAATACGCATATGTACATTGGATCGGGCCTATG ATCGGGCTTGGTCTGATTACATTTGGAATTTTCTTCATCTTCGAGTCGTGCTATAGCTTCACGTCGGATTGCTAC GGTGAAACTTCCTCTTCGGCGATCGCTGGACAGGGATTCATGAGGAATACGCTCGGCGCCGTGTCGCCTCTATTT GCTTCCCAGTTCTTTCATAATGTTCGCAGCCAATATGCAGGCCTGATTCTGTCGATCATAGCCGCTTTCTTGACT GCGATCCCTTATGTGTTGTTTGTTTATGGTCCGGCAATTCGATCCCGATCTAAGCTGGCGAGTGTGCCTCAGCGT CGGCCTAGCTCCGGTCTTTGA |
| Gene | >Pro_DTO377G3_2|g1251.t1 ATGCATTTTCACAACAGAGACTCCTCCTTTCACTCGACAGATACCGCCCAGAATTCGCCGGATTCGGCGTCCTAT CACGAAAATGATAAACCTCCATCATCGCCATCTGTCGAGCTCGTTCCAGGTCAAAAGGGTCGACTAGCTGGTGGG AAGTATCTCCAACCTTCCACCTCCCACCATGAACACTTCACAACCCTTGATTTCGACTTTCCTTTAACTGGCACC AAAGCGATAGTCCAAGGTGGTAAGCAATATATCTTGATTGACTACACCTTTGGAGACAAAGAGAATCCATTCAAT TGGAGCCCTTGGAAGAAGGCATTAGTCTCAGGCCTCCTTTGTTTGATGACCCTTTTCATCGGCCTAGCGACTACT GCCTACAGCTCTGGTATCACCCGAATGTGTGCAGATCTCGGCGTCTCCTTGGAGCTCGGGCAAATGGGTCTGTTC ACCTTCAATATGACCTGCGCCTTGGCACCATTGTTCCTAGCACCTTTTTGCGAACTTGCTGGGCGACGCATTGTC TACGCGGGTGCATACGTGGGGTTCTCGATTATGTTTATTGGCCTTGCACTAGGCAAGAATATCGCAACTATTCTC GTATGCCGAGCGCTGCTAGGTCTATTCGGTTGTGTAGGGACTATTCTTGTCGGAGGTACCTTTGGCGACATGTAC CACCCCGAGGATCGAGCTATCCCTATGGCCTCGTTCTCGTATGTCGCAATTCTCGGTACCGTTGCTGCTCCAATC TACGCCGGCTTCATCGACGAGACAATTGGCTGGCGTTGGATTGAAGGAATCCAAGGTCTAGCGAATGTCCCTCTT ATGCTCATCATCGTATTCTTCTTTCCTGAGACTCGGGGCAGCATGATGCTTTCTAAAAGGGCCAAGATTCTACGT TCAAAGACGGGTGATCAACGCTATGTCGCTCTGAACGACCTCGAAGCACCTAATTTGAAGCGTATGCTATACAAC TCTTCCGTAAAAGCAGTAAAAATGCTTATTACGGAACCTGTTGTTTTCTTCTTCGGTCTTTGGATTAGCTTTGCT TGGTTCTTGACCTTTCTCTTCTTATCGGTGATCCCTATAACCTATGAAGAAAAGAAAGGCTGGAGCGAGGGCGTT GCCGGCCTCCCATACATCGCGCTCTGCATCGGCACGACCCTCGGCTTCATGATGCATTTCCTCCAAATTCACAAA TACAACACAGTCCATAAAGACAAGACCGATGAAGAAATGCGTCCGGAAGCCAGACTTTACGGTGTCATGTTTGGA GCCGTCGCGCTTCCAATCGGCCTGTTTATCTACTCCTTCACACAATACGCATATGTACATTGGATCGGGCCTATG ATCGGGCTTGGTCTGATTACATTTGGAATTTTCTTCATCTTCGAGTCGTGCTATAGCTTCACGTCGGATTGCTAC GGTGAAACTTCCTCTTCGGCGATCGCTGGACAGGGATTCATGAGGAATACGCTCGGCGCCGTGTCGCCTCTATTT GCTTCCCAGTTCTTTCATAATGTTCGCAGCCAATATGCAGGCCTGATTCTGTCGATCATAGCCGCTTTCTTGACT GCGATCCCTTATGTGTTGTTTGTTTATGGTCCGGCAATTCGATCCCGATCTAAGCTGGCGAGTGTGCCTCAGCGT CGGCCTAGCTCCGGTCTTTGA |