© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1247.t1 |
| Gene name | |
| Location | scaffold_01:3283845..3284503 |
| Strand | + |
| Gene length (bp) | 658 |
| Transcript length (bp) | 588 |
| Coding sequence length (bp) | 588 |
| Protein length (aa) | 196 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 43 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 37 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 43.66 | 19.86 | 67.46 |
| 5d_25C | Five days - 25 degrees Celsius | 66.39 | 33.51 | 99.27 |
| 7d_25C | Seven days - 25 degrees Celsius | 72.22 | 37.26 | 107.19 |
| 10d_25C | Ten days - 25 degrees Celsius | 82.17 | 43.19 | 121.16 |
| 7d_15C | Seven days - 15 degrees Celsius | 73.15 | 37.38 | 108.92 |
| 7d_30C | Seven days - 30 degrees Celsius | 61.66 | 30.51 | 92.81 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.145347 | no |
| 3d_25C | 7d_25C | 0.074872 | no |
| 3d_25C | 7d_15C | 0.062802 | no |
| 3d_25C | 7d_30C | 0.251597 | no |
| 3d_25C | 10d_25C | 0.019886 | yes |
| 5d_25C | 7d_25C | 0.828297 | no |
| 5d_25C | 7d_15C | 0.796109 | no |
| 5d_25C | 7d_30C | 0.850779 | no |
| 5d_25C | 10d_25C | 0.499494 | no |
| 7d_25C | 7d_15C | 0.977449 | no |
| 7d_25C | 7d_30C | 0.647772 | no |
| 7d_25C | 10d_25C | 0.721556 | no |
| 7d_15C | 7d_30C | 0.613556 | no |
| 7d_15C | 10d_25C | 0.750047 | no |
| 7d_30C | 10d_25C | 0.345839 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1247.t1 MDQWCISNSSPRQHINTSWPITSFQSVLLNIILSLFIARENASTDLSMQCRLPDDKYDLLAALVQSCRRSGIFYY PNMLLQHDADAPLALVYVSVEEIKRFGLALYKVCRLSTPTSFDLSGEFSNGGRNDLLTLADLSFCMPDSDELWNA PLGGESEVLNKSDSSAVGRDNGDAKNWISQASALLHDARVGFDWI* |
| Coding | >Pro_DTO377G3_2|g1247.t1 ATGGACCAATGGTGCATCTCCAACTCCAGTCCACGCCAACACATAAATACATCGTGGCCTATAACATCATTTCAA AGTGTGCTCTTGAATATCATTCTTTCTCTTTTCATTGCAAGGGAGAATGCTAGTACAGATCTGAGCATGCAATGC CGATTACCAGACGACAAATACGACCTCTTGGCTGCGCTTGTTCAAAGCTGTCGAAGGTCGGGGATCTTCTACTAC CCTAACATGCTTCTGCAACACGATGCCGATGCACCACTCGCGCTTGTATATGTGAGCGTTGAAGAGATCAAGAGA TTTGGACTAGCCCTCTATAAGGTGTGCCGGTTGTCCACTCCCACTTCCTTTGATTTGAGCGGAGAATTTTCCAAT GGTGGCAGAAACGATCTTTTGACCCTGGCCGACTTGTCCTTTTGCATGCCCGACAGTGATGAGCTGTGGAACGCT CCATTGGGCGGGGAATCCGAGGTGTTAAACAAGTCCGATTCATCTGCGGTCGGACGGGATAATGGAGATGCGAAA AACTGGATATCTCAAGCATCTGCTCTTCTACACGACGCACGAGTTGGCTTTGATTGGATATAG |
| Transcript | >Pro_DTO377G3_2|g1247.t1 ATGGACCAATGGTGCATCTCCAACTCCAGTCCACGCCAACACATAAATACATCGTGGCCTATAACATCATTTCAA AGTGTGCTCTTGAATATCATTCTTTCTCTTTTCATTGCAAGGGAGAATGCTAGTACAGATCTGAGCATGCAATGC CGATTACCAGACGACAAATACGACCTCTTGGCTGCGCTTGTTCAAAGCTGTCGAAGGTCGGGGATCTTCTACTAC CCTAACATGCTTCTGCAACACGATGCCGATGCACCACTCGCGCTTGTATATGTGAGCGTTGAAGAGATCAAGAGA TTTGGACTAGCCCTCTATAAGGTGTGCCGGTTGTCCACTCCCACTTCCTTTGATTTGAGCGGAGAATTTTCCAAT GGTGGCAGAAACGATCTTTTGACCCTGGCCGACTTGTCCTTTTGCATGCCCGACAGTGATGAGCTGTGGAACGCT CCATTGGGCGGGGAATCCGAGGTGTTAAACAAGTCCGATTCATCTGCGGTCGGACGGGATAATGGAGATGCGAAA AACTGGATATCTCAAGCATCTGCTCTTCTACACGACGCACGAGTTGGCTTTGATTGGATATAG |
| Gene | >Pro_DTO377G3_2|g1247.t1 ATGGTGAGAAGAAGAAGCATGATAAAAGTAACTGCATATAGAATTGTGTGTTGATATCATCTTTTTGCTCTAGGA CCAATGGTGCATCTCCAACTCCAGTCCACGCCAACACATAAATACATCGTGGCCTATAACATCATTTCAAAGTGT GCTCTTGAATATCATTCTTTCTCTTTTCATTGCAAGGGAGAATGCTAGTACAGATCTGAGCATGCAATGCCGATT ACCAGACGACAAATACGACCTCTTGGCTGCGCTTGTTCAAAGCTGTCGAAGGTCGGGGATCTTCTACTACCCTAA CATGCTTCTGCAACACGATGCCGATGCACCACTCGCGCTTGTATATGTGAGCGTTGAAGAGATCAAGAGATTTGG ACTAGCCCTCTATAAGGTGTGCCGGTTGTCCACTCCCACTTCCTTTGATTTGAGCGGAGAATTTTCCAATGGTGG CAGAAACGATCTTTTGACCCTGGCCGACTTGTCCTTTTGCATGCCCGACAGTGATGAGCTGTGGAACGCTCCATT GGGCGGGGAATCCGAGGTGTTAAACAAGTCCGATTCATCTGCGGTCGGACGGGATAATGGAGATGCGAAAAACTG GATATCTCAAGCATCTGCTCTTCTACACGACGCACGAGTTGGCTTTGATTGGATATAG |