© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1235.t1 |
| Gene name | |
| Location | scaffold_01:3256945..3258596 |
| Strand | - |
| Gene length (bp) | 1651 |
| Transcript length (bp) | 1437 |
| Coding sequence length (bp) | 1437 |
| Protein length (aa) | 479 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 2.2E-33 | 25 | 377 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 17 | 39 | 22 |
| 2 | 59 | 81 | 22 |
| 3 | 93 | 115 | 22 |
| 4 | 120 | 137 | 17 |
| 5 | 150 | 172 | 22 |
| 6 | 177 | 199 | 22 |
| 7 | 267 | 284 | 17 |
| 8 | 294 | 316 | 22 |
| 9 | 328 | 350 | 22 |
| 10 | 373 | 395 | 22 |
| 11 | 416 | 438 | 22 |
| 12 | 443 | 465 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 13.01 | 5.83 | 20.20 |
| 5d_25C | Five days - 25 degrees Celsius | 8.37 | 3.15 | 13.58 |
| 7d_25C | Seven days - 25 degrees Celsius | 8.16 | 2.94 | 13.38 |
| 10d_25C | Ten days - 25 degrees Celsius | 3.07 | 0.51 | 5.63 |
| 7d_15C | Seven days - 15 degrees Celsius | 18.25 | 7.53 | 28.97 |
| 7d_30C | Seven days - 30 degrees Celsius | 31.38 | 16.95 | 45.81 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.200576 | no |
| 3d_25C | 7d_25C | 0.170566 | no |
| 3d_25C | 7d_15C | 0.334867 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.966089 | no |
| 5d_25C | 7d_15C | 0.016924 | yes |
| 5d_25C | 7d_30C | 0.000700 | yes |
| 5d_25C | 10d_25C | 0.019353 | yes |
| 7d_25C | 7d_15C | 0.010083 | yes |
| 7d_25C | 7d_30C | 0.000700 | yes |
| 7d_25C | 10d_25C | 0.023673 | yes |
| 7d_15C | 7d_30C | 0.068408 | no |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Orthofinder run ID | 2 |
| Orthogroup | 8713 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1235.t1 MDKDTKPWGYRWRSSRLLVVSSITVALFAETFLYGFLTPILSYMLEERLHLDPSQTQTFTTALLTTHGFIGLVSA PIVAHFAEKTPSQKKPLLIALAGCFIGTLMIALAPSVWILFLGRILQSMAGAGTWVVGFALLANNVDKQHLGQSM GMAMSFVTAGMVGGPTVSGALLQLFGYWAAWSLPLIVLVLDIIARLVMIEPGLESSKKIDSLSKPVVSVVSNEVD PEETTALLSEAPSTVNPDDCKVENKHDLKHEYYRIMLSDPRVLTGLANVVVVSSLMSGINNTLPVHLRQAFGWKS LLISMMFFCLQVPNILLSGPSGWLRDRVGIRGPTVFGWLAMIPLILLLGMPGDSHFPWAGGDAAGKSIFTTSLIA LGSILPLVRGVGAVQLAYVVKDMETKDAQLFEANRSNLRVFSMTEVGYSLGMMLGPLLTGSLFEGVGFFYMTVAL AITCLIQAVISWLWLDTLASPEAPEASV* |
| Coding | >Pro_DTO377G3_2|g1235.t1 ATGGACAAGGATACAAAGCCATGGGGCTACAGGTGGCGTTCATCTCGCCTTTTGGTGGTTTCGTCCATCACGGTT GCCTTATTCGCAGAAACATTTCTCTACGGGTTTCTTACTCCGATCTTGAGTTATATGCTTGAAGAACGACTGCAC CTGGATCCATCACAGACTCAGACGTTCACTACGGCATTGCTCACCACTCATGGGTTCATTGGTCTCGTTTCTGCC CCGATTGTCGCGCATTTTGCCGAGAAGACTCCGAGCCAAAAGAAACCACTATTGATCGCCCTGGCAGGATGTTTT ATAGGGACCCTTATGATTGCTCTTGCCCCATCCGTTTGGATTCTCTTCCTTGGTCGCATCCTGCAATCCATGGCA GGTGCCGGAACTTGGGTGGTTGGATTTGCTCTATTGGCAAATAATGTGGACAAGCAACACCTTGGACAGTCGATG GGCATGGCCATGTCATTTGTAACGGCAGGAATGGTCGGCGGACCAACAGTGAGTGGCGCATTGCTCCAGTTATTT GGCTACTGGGCCGCCTGGTCACTTCCCTTGATCGTACTCGTCTTGGATATCATTGCACGCCTGGTAATGATTGAG CCTGGCCTCGAATCGTCAAAGAAAATTGATTCTTTGAGCAAGCCTGTTGTGTCAGTGGTCAGCAATGAGGTGGAC CCAGAAGAGACGACTGCACTGCTTTCTGAGGCACCGTCTACCGTCAATCCAGATGACTGTAAAGTGGAGAACAAG CATGACCTCAAACATGAGTACTACAGAATCATGCTCTCCGATCCACGTGTTTTGACCGGATTGGCCAACGTCGTC GTTGTCTCCTCCCTCATGTCTGGCATTAACAACACTCTCCCTGTCCACCTGCGACAAGCATTCGGTTGGAAGAGT TTACTCATTAGTATGATGTTCTTCTGTCTCCAAGTCCCGAATATCCTTCTCAGCGGTCCATCCGGATGGCTTCGC GATCGAGTCGGAATACGGGGACCTACTGTCTTCGGCTGGCTTGCGATGATCCCTCTCATCTTACTTCTAGGGATG CCCGGAGACTCCCACTTCCCATGGGCCGGAGGAGATGCAGCTGGAAAGTCTATTTTTACCACCAGTTTGATTGCC TTGGGTAGTATCCTACCTCTTGTGCGCGGCGTAGGAGCCGTGCAACTGGCTTATGTTGTCAAGGACATGGAAACT AAAGATGCGCAGCTATTCGAGGCCAACAGAAGCAACTTGCGAGTCTTTTCCATGACTGAAGTAGGATATAGTCTC GGAATGATGCTCGGGCCTCTATTGACTGGCTCGCTATTCGAAGGAGTTGGCTTCTTTTACATGACTGTGGCACTA GCTATTACCTGCCTCATCCAGGCCGTCATTTCCTGGCTTTGGTTGGATACCTTAGCCTCACCTGAAGCCCCCGAA GCTTCGGTTTAA |
| Transcript | >Pro_DTO377G3_2|g1235.t1 ATGGACAAGGATACAAAGCCATGGGGCTACAGGTGGCGTTCATCTCGCCTTTTGGTGGTTTCGTCCATCACGGTT GCCTTATTCGCAGAAACATTTCTCTACGGGTTTCTTACTCCGATCTTGAGTTATATGCTTGAAGAACGACTGCAC CTGGATCCATCACAGACTCAGACGTTCACTACGGCATTGCTCACCACTCATGGGTTCATTGGTCTCGTTTCTGCC CCGATTGTCGCGCATTTTGCCGAGAAGACTCCGAGCCAAAAGAAACCACTATTGATCGCCCTGGCAGGATGTTTT ATAGGGACCCTTATGATTGCTCTTGCCCCATCCGTTTGGATTCTCTTCCTTGGTCGCATCCTGCAATCCATGGCA GGTGCCGGAACTTGGGTGGTTGGATTTGCTCTATTGGCAAATAATGTGGACAAGCAACACCTTGGACAGTCGATG GGCATGGCCATGTCATTTGTAACGGCAGGAATGGTCGGCGGACCAACAGTGAGTGGCGCATTGCTCCAGTTATTT GGCTACTGGGCCGCCTGGTCACTTCCCTTGATCGTACTCGTCTTGGATATCATTGCACGCCTGGTAATGATTGAG CCTGGCCTCGAATCGTCAAAGAAAATTGATTCTTTGAGCAAGCCTGTTGTGTCAGTGGTCAGCAATGAGGTGGAC CCAGAAGAGACGACTGCACTGCTTTCTGAGGCACCGTCTACCGTCAATCCAGATGACTGTAAAGTGGAGAACAAG CATGACCTCAAACATGAGTACTACAGAATCATGCTCTCCGATCCACGTGTTTTGACCGGATTGGCCAACGTCGTC GTTGTCTCCTCCCTCATGTCTGGCATTAACAACACTCTCCCTGTCCACCTGCGACAAGCATTCGGTTGGAAGAGT TTACTCATTAGTATGATGTTCTTCTGTCTCCAAGTCCCGAATATCCTTCTCAGCGGTCCATCCGGATGGCTTCGC GATCGAGTCGGAATACGGGGACCTACTGTCTTCGGCTGGCTTGCGATGATCCCTCTCATCTTACTTCTAGGGATG CCCGGAGACTCCCACTTCCCATGGGCCGGAGGAGATGCAGCTGGAAAGTCTATTTTTACCACCAGTTTGATTGCC TTGGGTAGTATCCTACCTCTTGTGCGCGGCGTAGGAGCCGTGCAACTGGCTTATGTTGTCAAGGACATGGAAACT AAAGATGCGCAGCTATTCGAGGCCAACAGAAGCAACTTGCGAGTCTTTTCCATGACTGAAGTAGGATATAGTCTC GGAATGATGCTCGGGCCTCTATTGACTGGCTCGCTATTCGAAGGAGTTGGCTTCTTTTACATGACTGTGGCACTA GCTATTACCTGCCTCATCCAGGCCGTCATTTCCTGGCTTTGGTTGGATACCTTAGCCTCACCTGAAGCCCCCGAA GCTTCGGTTTAA |
| Gene | >Pro_DTO377G3_2|g1235.t1 ATGGACAAGGATACAAAGCCATGGGGCTACAGGTGGCGTTCATCTCGCCTTTTGGTGGTTTCGTCCATCACGGTT GCCTTATTCGCAGGTGTGTGGTTGTTTCACGGTTCTCACTCTGAGTCATGCTAACCATCCATCAGAAACATTTCT CTACGGGTTTCTTACTCCGATCTTGAGTTATATGCTTGAAGAACGACTGCACCTGGATCCATCACAGACTCAGAC GTTCACTACGGCATTGCTCACCACTCATGGGTTCATTGGTCTCGTTTCTGCCCCGATTGTCGCGCATTTTGCCGA GAAGACTCCGAGCCAAAAGAAACCACTATTGATCGCCCTGGCAGGATGTTTTATAGGGACCCTTATGATTGCTCT TGCCCCATCCGGTATGAGAATATTTAAACTTGATGATGATTATTTGAAATTGATTTCGTGAACAGTTTGGATTCT CTTCCTTGGTCGCATCCTGCAATCCATGGCAGGTGCCGGAACTTGGGTGGTTGGATTTGCTCTATTGGCAAATAA TGTGGACAAGCAACACCTTGGACAGTCGATGGGCATGGCCATGTCATTTGTAACGGCAGGAATGGTCGGCGGACC AACAGTGAGTGGCGCATTGCTCCAGTTATTTGGCTACTGGGCCGCCTGGTCACTTCCCTTGATCGTACTCGTCTT GGATATCATTGCACGCCTGGTAATGATTGAGCCTGGCCTCGAATCGTCAAAGAAAATTGATTCTTTGAGCAAGCC TGTTGTGTCAGTGGTCAGCAATGAGGTGGACCCAGAAGAGACGACTGCACTGCTTTCTGAGGCACCGTCTACCGT CAATCCAGATGACTGTAAAGTGGAGAACAAGCATGACCTCAAACATGAGTACTACAGAATCATGCTCTCCGATCC ACGTGTTTTGACCGGATTGGCCAACGTCGTCGTTGTCTCCTCCCTCATGTCTGGCATTAACAACACTCTCCCTGT CCACCTGCGACAAGCATTCGGTTGGAAGAGTTTACTCATTAGTATGATGTTCTTCTGTCTCCAAGTCCCGAATAT CCTTCTCAGCGGTCCATCCGGATGGCTTCGCGATCGAGTCGGAATACGGGGACCTACTGTCTTCGGCTGGCTTGC GATGATCCCTCTCATCTTACTTCTAGGGATGCCCGGAGACTCCCACTTCCCATGGGCCGGAGGAGATGCAGCTGG AAAGTCTATTTTTACCACCAGTTTGATTGCCTTGGGTAGTATCCTACCTCTTGTGCGCGGCGTAGGAGCCGTGCA ACTGGCTTGTGAGTGATCACATTTTGTGTAGTTCGTTCCTCCACTAACAAATGTGACTTTCAATAGATGTTGTCA AGGACATGGAAACTAAAGATGCGCAGCTATTCGAGGCCAACAGAAGCAACTTGCGAGTCTTTTCCATGACTGAAG TAGGATATAGTCTCGGAATGATGCTCGGGCCTCTATTGACTGGCTCGCTATTCGAAGGAGTTGGCTTCTTTTACA TGACTGTGGCACTAGGTGAGTCATGCTTTCCATAACGTATCGTTCAATTTACTCACCCGGTGCAGCTATTACCTG CCTCATCCAGGCCGTCATTTCCTGGCTTTGGTTGGATACCTTAGCCTCACCTGAAGCCCCCGAAGCTTCGGTTTA A |