© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1228.t1 |
| Gene name | |
| Location | scaffold_01:3238369..3239236 |
| Strand | + |
| Gene length (bp) | 867 |
| Transcript length (bp) | 867 |
| Coding sequence length (bp) | 867 |
| Protein length (aa) | 289 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08700 | Vps51 | Vps51/Vps67 | 1.2E-26 | 105 | 193 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 51 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 24.19 | 11.02 | 37.36 |
| 5d_25C | Five days - 25 degrees Celsius | 18.20 | 7.56 | 28.83 |
| 7d_25C | Seven days - 25 degrees Celsius | 16.72 | 6.52 | 26.92 |
| 10d_25C | Ten days - 25 degrees Celsius | 13.13 | 4.72 | 21.54 |
| 7d_15C | Seven days - 15 degrees Celsius | 17.66 | 7.29 | 28.03 |
| 7d_30C | Seven days - 30 degrees Celsius | 13.44 | 4.99 | 21.90 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.411275 | no |
| 3d_25C | 7d_25C | 0.277510 | no |
| 3d_25C | 7d_15C | 0.351618 | no |
| 3d_25C | 7d_30C | 0.053684 | no |
| 3d_25C | 10d_25C | 0.059534 | no |
| 5d_25C | 7d_25C | 0.863124 | no |
| 5d_25C | 7d_15C | 0.954440 | no |
| 5d_25C | 7d_30C | 0.417490 | no |
| 5d_25C | 10d_25C | 0.397505 | no |
| 7d_25C | 7d_15C | 0.916804 | no |
| 7d_25C | 7d_30C | 0.603656 | no |
| 7d_25C | 10d_25C | 0.569666 | no |
| 7d_15C | 7d_30C | 0.477127 | no |
| 7d_15C | 10d_25C | 0.451808 | no |
| 7d_30C | 10d_25C | 0.966089 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1228.t1 MSTISSPRQSLASSRALSPGPASSRPSLDALNTSVSGGLSAASTPSTARAISPSLHPRRNRSALRDYYNLKPPGA GTSASRDASRTRSEAGDISDPASLASGTELDSANFDPQRYVEHLLSSSSLSTVLKAENTLVGDIRTLDGERKALV YDNYSKLIRAVETIGKMRRSMDDRGAPLTMTKTLGPAIAFVAETASGLIKEGEEQRRLMKEAKLEDGTSSKKSEK DTVRWVLSSPQRLEKLMAEGKEEDAQKDWKEIQHLLDAWGEVKGVAEVRTACEKVMNPARNDD* |
| Coding | >Pro_DTO377G3_2|g1228.t1 ATGTCGACCATATCTTCTCCACGCCAATCCCTCGCCTCCTCTAGAGCCCTTTCCCCGGGTCCAGCCTCCTCCCGC CCATCACTCGATGCCTTGAACACCAGCGTCAGCGGGGGGCTCAGCGCCGCATCTACCCCATCCACTGCACGAGCT ATTTCCCCCTCACTCCATCCCCGACGCAATCGAAGTGCCTTGCGAGACTATTACAATCTCAAGCCACCTGGGGCG GGCACATCTGCCTCCCGGGACGCATCTCGCACTCGGAGTGAAGCAGGAGACATATCCGACCCAGCCAGTCTAGCG TCAGGGACGGAGCTCGACAGTGCAAACTTCGACCCGCAGCGGTATGTCGAGCACCTATTGTCATCGTCGTCGCTG TCTACGGTGCTCAAGGCGGAGAATACGTTGGTTGGGGATATCCGCACTCTCGACGGAGAGCGGAAAGCGCTGGTC TACGATAACTACTCGAAGTTGATTCGCGCTGTGGAGACAATTGGGAAAATGCGGCGCAGTATGGATGATCGCGGT GCGCCGTTGACAATGACGAAAACGCTGGGTCCGGCTATTGCTTTTGTTGCTGAGACTGCCAGTGGGCTTATTAAA GAAGGCGAGGAGCAACGGCGGCTGATGAAGGAAGCCAAGCTGGAAGATGGGACTTCGAGCAAGAAGAGTGAGAAG GATACTGTTCGGTGGGTGCTTTCTTCACCGCAGAGATTAGAGAAGCTTATGGCGGAGGGTAAAGAGGAGGATGCG CAAAAGGACTGGAAAGAGATCCAGCATTTACTCGACGCTTGGGGTGAGGTCAAGGGGGTTGCTGAGGTTCGGACA GCGTGTGAGAAAGTCATGAACCCGGCACGCAACGATGACTGA |
| Transcript | >Pro_DTO377G3_2|g1228.t1 ATGTCGACCATATCTTCTCCACGCCAATCCCTCGCCTCCTCTAGAGCCCTTTCCCCGGGTCCAGCCTCCTCCCGC CCATCACTCGATGCCTTGAACACCAGCGTCAGCGGGGGGCTCAGCGCCGCATCTACCCCATCCACTGCACGAGCT ATTTCCCCCTCACTCCATCCCCGACGCAATCGAAGTGCCTTGCGAGACTATTACAATCTCAAGCCACCTGGGGCG GGCACATCTGCCTCCCGGGACGCATCTCGCACTCGGAGTGAAGCAGGAGACATATCCGACCCAGCCAGTCTAGCG TCAGGGACGGAGCTCGACAGTGCAAACTTCGACCCGCAGCGGTATGTCGAGCACCTATTGTCATCGTCGTCGCTG TCTACGGTGCTCAAGGCGGAGAATACGTTGGTTGGGGATATCCGCACTCTCGACGGAGAGCGGAAAGCGCTGGTC TACGATAACTACTCGAAGTTGATTCGCGCTGTGGAGACAATTGGGAAAATGCGGCGCAGTATGGATGATCGCGGT GCGCCGTTGACAATGACGAAAACGCTGGGTCCGGCTATTGCTTTTGTTGCTGAGACTGCCAGTGGGCTTATTAAA GAAGGCGAGGAGCAACGGCGGCTGATGAAGGAAGCCAAGCTGGAAGATGGGACTTCGAGCAAGAAGAGTGAGAAG GATACTGTTCGGTGGGTGCTTTCTTCACCGCAGAGATTAGAGAAGCTTATGGCGGAGGGTAAAGAGGAGGATGCG CAAAAGGACTGGAAAGAGATCCAGCATTTACTCGACGCTTGGGGTGAGGTCAAGGGGGTTGCTGAGGTTCGGACA GCGTGTGAGAAAGTCATGAACCCGGCACGCAACGATGACTGA |
| Gene | >Pro_DTO377G3_2|g1228.t1 ATGTCGACCATATCTTCTCCACGCCAATCCCTCGCCTCCTCTAGAGCCCTTTCCCCGGGTCCAGCCTCCTCCCGC CCATCACTCGATGCCTTGAACACCAGCGTCAGCGGGGGGCTCAGCGCCGCATCTACCCCATCCACTGCACGAGCT ATTTCCCCCTCACTCCATCCCCGACGCAATCGAAGTGCCTTGCGAGACTATTACAATCTCAAGCCACCTGGGGCG GGCACATCTGCCTCCCGGGACGCATCTCGCACTCGGAGTGAAGCAGGAGACATATCCGACCCAGCCAGTCTAGCG TCAGGGACGGAGCTCGACAGTGCAAACTTCGACCCGCAGCGGTATGTCGAGCACCTATTGTCATCGTCGTCGCTG TCTACGGTGCTCAAGGCGGAGAATACGTTGGTTGGGGATATCCGCACTCTCGACGGAGAGCGGAAAGCGCTGGTC TACGATAACTACTCGAAGTTGATTCGCGCTGTGGAGACAATTGGGAAAATGCGGCGCAGTATGGATGATCGCGGT GCGCCGTTGACAATGACGAAAACGCTGGGTCCGGCTATTGCTTTTGTTGCTGAGACTGCCAGTGGGCTTATTAAA GAAGGCGAGGAGCAACGGCGGCTGATGAAGGAAGCCAAGCTGGAAGATGGGACTTCGAGCAAGAAGAGTGAGAAG GATACTGTTCGGTGGGTGCTTTCTTCACCGCAGAGATTAGAGAAGCTTATGGCGGAGGGTAAAGAGGAGGATGCG CAAAAGGACTGGAAAGAGATCCAGCATTTACTCGACGCTTGGGGTGAGGTCAAGGGGGTTGCTGAGGTTCGGACA GCGTGTGAGAAAGTCATGAACCCGGCACGCAACGATGACTGA |