Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g1203.t1
Gene name
Locationscaffold_01:3176401..3176929
Strand+
Gene length (bp)528
Transcript length (bp)465
Coding sequence length (bp)465
Protein length (aa) 155

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF08523 MBF1 Multiprotein bridging factor 1 8.6E-23 2 79
PF01381 HTH_3 Helix-turn-helix 5.3E-09 87 140

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 20 0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
Helix-turn-helix

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g1203.t1
MSDWESTTKIGSKFRGAGAQPREVVVKGKSALNAAQRSGGVITEKKYTTGNISAKAGAPEGQHLTKVDRSDDIVK
PKTIGHAVADAIKRRRTEEGYKMTQKELATKCNTTITIVQDFERGTAAPDQKVLGAMERVLNIKLRGSDIGSEKF
PKKK*
Coding >Pro_DTO377G3_2|g1203.t1
ATGTCTGACTGGGAAAGCACCACCAAGATTGGCAGCAAGTTCCGCGGAGCAGGCGCTCAACCCCGCGAGGTCGTC
GTCAAGGGCAAGAGTGCCCTGAACGCTGCCCAGCGCTCTGGCGGTGTCATCACCGAGAAGAAGTACACCACCGGT
AACATCAGTGCCAAGGCAGGCGCCCCCGAAGGCCAACACTTGACCAAGGTCGACCGCAGCGACGACATCGTCAAG
CCCAAGACCATCGGCCACGCCGTCGCTGATGCTATCAAGAGACGTCGCACAGAGGAGGGCTACAAGATGACCCAG
AAGGAACTCGCCACCAAGTGCAACACCACTATCACCATTGTCCAGGACTTCGAGCGTGGAACCGCCGCTCCCGAC
CAGAAGGTTCTCGGAGCCATGGAGCGTGTGCTGAACATTAAGCTGCGTGGCTCAGACATCGGCTCTGAAAAGTTC
CCCAAGAAGAAATAG
Transcript >Pro_DTO377G3_2|g1203.t1
ATGTCTGACTGGGAAAGCACCACCAAGATTGGCAGCAAGTTCCGCGGAGCAGGCGCTCAACCCCGCGAGGTCGTC
GTCAAGGGCAAGAGTGCCCTGAACGCTGCCCAGCGCTCTGGCGGTGTCATCACCGAGAAGAAGTACACCACCGGT
AACATCAGTGCCAAGGCAGGCGCCCCCGAAGGCCAACACTTGACCAAGGTCGACCGCAGCGACGACATCGTCAAG
CCCAAGACCATCGGCCACGCCGTCGCTGATGCTATCAAGAGACGTCGCACAGAGGAGGGCTACAAGATGACCCAG
AAGGAACTCGCCACCAAGTGCAACACCACTATCACCATTGTCCAGGACTTCGAGCGTGGAACCGCCGCTCCCGAC
CAGAAGGTTCTCGGAGCCATGGAGCGTGTGCTGAACATTAAGCTGCGTGGCTCAGACATCGGCTCTGAAAAGTTC
CCCAAGAAGAAATAG
Gene >Pro_DTO377G3_2|g1203.t1
ATGTCTGACTGGGAAAGCACCACCAAGATTGGCAGCAAGTTCCGCGGAGCAGGCGCTCAACCCCGCGAGGTCGTC
GTCAAGGGCAAGAGTGCCCTGAACGCTGCCCAGCGCTCTGGCGGTGTCATCACCGAGAAGAAGTACACCACCGGT
AACATCGTATGTGAAGTTTCCTTCGAATCCGGGAGAAACACCATGAATGTAGGCTAACCCACTCTCAAGAGTGCC
AAGGCAGGCGCCCCCGAAGGCCAACACTTGACCAAGGTCGACCGCAGCGACGACATCGTCAAGCCCAAGACCATC
GGCCACGCCGTCGCTGATGCTATCAAGAGACGTCGCACAGAGGAGGGCTACAAGATGACCCAGAAGGAACTCGCC
ACCAAGTGCAACACCACTATCACCATTGTCCAGGACTTCGAGCGTGGAACCGCCGCTCCCGACCAGAAGGTTCTC
GGAGCCATGGAGCGTGTGCTGAACATTAAGCTGCGTGGCTCAGACATCGGCTCTGAAAAGTTCCCCAAGAAGAAA
TAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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