© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1194.t1 |
| Gene name | |
| Location | scaffold_01:3153305..3154374 |
| Strand | - |
| Gene length (bp) | 1069 |
| Transcript length (bp) | 1017 |
| Coding sequence length (bp) | 1017 |
| Protein length (aa) | 339 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00106 | adh_short | short chain dehydrogenase | 1.2E-16 | 26 | 153 |
| PF13561 | adh_short_C2 | Enoyl-(Acyl carrier protein) reductase | 9.7E-08 | 32 | 153 |
| PF08659 | KR | KR domain | 4.7E-05 | 28 | 121 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 22.60 | 10.41 | 34.80 |
| 5d_25C | Five days - 25 degrees Celsius | 23.82 | 11.21 | 36.43 |
| 7d_25C | Seven days - 25 degrees Celsius | 32.95 | 16.75 | 49.15 |
| 10d_25C | Ten days - 25 degrees Celsius | 22.42 | 10.38 | 34.45 |
| 7d_15C | Seven days - 15 degrees Celsius | 19.05 | 8.37 | 29.73 |
| 7d_30C | Seven days - 30 degrees Celsius | 27.69 | 13.53 | 41.86 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.907092 | no |
| 3d_25C | 7d_25C | 0.199428 | no |
| 3d_25C | 7d_15C | 0.659531 | no |
| 3d_25C | 7d_30C | 0.552357 | no |
| 3d_25C | 10d_25C | 0.987005 | no |
| 5d_25C | 7d_25C | 0.278596 | no |
| 5d_25C | 7d_15C | 0.532977 | no |
| 5d_25C | 7d_30C | 0.675828 | no |
| 5d_25C | 10d_25C | 0.891500 | no |
| 7d_25C | 7d_15C | 0.051079 | no |
| 7d_25C | 7d_30C | 0.605782 | no |
| 7d_25C | 10d_25C | 0.188553 | no |
| 7d_15C | 7d_30C | 0.222604 | no |
| 7d_15C | 10d_25C | 0.683461 | no |
| 7d_30C | 10d_25C | 0.546252 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1194.t1 MAAIFRLLKMQYTPPLDPQGASFAGKIVILTGATSGLGFEAAIKILNLGVELLIIGSRSIEKGNKAKVDLERATN RRNVVKVWQLEMNSFQSVKDFAERVHVELDRVDVALLNAGLWNREYYQSPEGWEETLQVNTLSTLMLAILLLPKL KKSSYVDNPTHLTLVSSQQFVRVKPASIQTDGSILAHVNDPDNFNGPKQYGISKLLLEIVIKKIANIVCNDDGTH TLVVNTVSPGLCISALGRKYSHWWEKCIVWVMHTFFARTTEQGSRSLVSATLQGLETQGKCWRSEGYLDESTALT TILEGEELQEKAWEEIIAVLEEQAPEVSLVARGLYQGV* |
| Coding | >Pro_DTO377G3_2|g1194.t1 ATGGCGGCCATCTTTCGCCTCCTCAAGATGCAGTACACTCCTCCCCTTGATCCTCAAGGTGCGTCCTTCGCTGGT AAGATCGTCATTTTGACAGGTGCCACTTCTGGCCTTGGCTTTGAAGCAGCCATCAAAATCCTCAATCTCGGCGTC GAGTTGCTCATTATCGGATCTCGCAGCATCGAAAAGGGCAACAAGGCCAAAGTTGACCTCGAACGAGCCACGAAC CGACGCAACGTAGTCAAAGTGTGGCAGCTCGAGATGAACAGCTTCCAGAGCGTCAAAGACTTCGCCGAACGCGTC CATGTCGAGTTGGACCGTGTTGACGTCGCGTTGCTTAACGCTGGACTTTGGAATCGCGAATACTATCAGTCCCCC GAGGGCTGGGAGGAGACCCTACAGGTCAACACCCTGTCGACCTTGATGTTGGCCATACTTCTACTTCCTAAGCTA AAGAAAAGCTCCTACGTCGATAACCCCACCCACCTAACTCTCGTTTCCAGCCAGCAATTCGTTCGCGTCAAGCCC GCAAGCATCCAGACCGATGGCTCGATCCTCGCTCACGTCAACGACCCGGACAACTTCAACGGTCCCAAGCAGTAC GGCATTTCGAAGCTTCTGCTCGAAATCGTGATCAAGAAAATCGCCAATATCGTGTGCAACGACGACGGCACTCAC ACTCTGGTTGTCAACACTGTCAGCCCCGGACTGTGCATCTCGGCTTTGGGTCGCAAGTATTCTCATTGGTGGGAG AAGTGTATCGTTTGGGTTATGCACACGTTTTTCGCCCGTACTACTGAGCAGGGAAGCCGTTCGCTGGTCAGTGCT ACCCTCCAGGGCCTCGAAACGCAGGGGAAATGCTGGCGCAGTGAGGGATATCTTGATGAGTCGACTGCGCTGACT ACTATCCTAGAGGGCGAGGAACTCCAGGAGAAGGCTTGGGAGGAGATCATCGCCGTGCTCGAGGAGCAAGCACCG GAGGTGTCCCTCGTCGCTCGTGGCCTGTACCAGGGCGTTTAA |
| Transcript | >Pro_DTO377G3_2|g1194.t1 ATGGCGGCCATCTTTCGCCTCCTCAAGATGCAGTACACTCCTCCCCTTGATCCTCAAGGTGCGTCCTTCGCTGGT AAGATCGTCATTTTGACAGGTGCCACTTCTGGCCTTGGCTTTGAAGCAGCCATCAAAATCCTCAATCTCGGCGTC GAGTTGCTCATTATCGGATCTCGCAGCATCGAAAAGGGCAACAAGGCCAAAGTTGACCTCGAACGAGCCACGAAC CGACGCAACGTAGTCAAAGTGTGGCAGCTCGAGATGAACAGCTTCCAGAGCGTCAAAGACTTCGCCGAACGCGTC CATGTCGAGTTGGACCGTGTTGACGTCGCGTTGCTTAACGCTGGACTTTGGAATCGCGAATACTATCAGTCCCCC GAGGGCTGGGAGGAGACCCTACAGGTCAACACCCTGTCGACCTTGATGTTGGCCATACTTCTACTTCCTAAGCTA AAGAAAAGCTCCTACGTCGATAACCCCACCCACCTAACTCTCGTTTCCAGCCAGCAATTCGTTCGCGTCAAGCCC GCAAGCATCCAGACCGATGGCTCGATCCTCGCTCACGTCAACGACCCGGACAACTTCAACGGTCCCAAGCAGTAC GGCATTTCGAAGCTTCTGCTCGAAATCGTGATCAAGAAAATCGCCAATATCGTGTGCAACGACGACGGCACTCAC ACTCTGGTTGTCAACACTGTCAGCCCCGGACTGTGCATCTCGGCTTTGGGTCGCAAGTATTCTCATTGGTGGGAG AAGTGTATCGTTTGGGTTATGCACACGTTTTTCGCCCGTACTACTGAGCAGGGAAGCCGTTCGCTGGTCAGTGCT ACCCTCCAGGGCCTCGAAACGCAGGGGAAATGCTGGCGCAGTGAGGGATATCTTGATGAGTCGACTGCGCTGACT ACTATCCTAGAGGGCGAGGAACTCCAGGAGAAGGCTTGGGAGGAGATCATCGCCGTGCTCGAGGAGCAAGCACCG GAGGTGTCCCTCGTCGCTCGTGGCCTGTACCAGGGCGTTTAA |
| Gene | >Pro_DTO377G3_2|g1194.t1 ATGGCGGCCATCTTTCGCCTCCTCAAGATGCAGTACACTCCTCCCCTTGATCCTCAAGGTGCGTCCTTCGCTGGT AAGATCGTCATTTTGACAGGTGCCACTTCTGGCCTTGGCTTTGAAGCAGCCATCAAAATCCTCAATCTCGGCGTC GAGTTGCTCATTATCGGATCTCGCAGCATCGAAAAGGGCAACAAGGCCAAAGTTGACCTCGAACGAGCCACGAAC CGACGCAACGTAGTCAAAGTGTGGCAGCTCGAGATGAACAGCTTCCAGAGCGTCAAAGACTTCGCCGAACGCGTC CATGTCGAGTTGGACCGTGTTGACGTCGCGTTGCTTAACGCTGGACTTTGGAATCGCGAATACTATCAGTCCCCC GAGGGCTGGGAGGAGACCCTACAGGTCAACACCCTGTCGACCTTGATGTTGGCCATACTTCTACTTCCTAAGCTA AAGAAAAGCTCCTACGTCGATAACCCCACCCACCTAACTCTCGTTTCCAGCCAGCAATTCGTTCGCGTCAAGCCC GCAAGCATCCAGACCGATGGCTCGATCCTCGCTCACGTCAACGACCCGGACAACTTCAACGGTCCCAAGCAGTAC GGCATTTCGAAGCTTCTGCTCGAAATCGTGATCAAGAAAATCGCCAATATCGTGTGCAACGACGACGGCACTCAC ACTCTGGTTGTCAACACTGTCAGCCCCGGACTGTGCATCTCGGCTTTGGGTCGCAAGTATTCTCATTGGTGGGAG AAGTGTATCGTTTGGGTTATGCACACGTTTTTCGCCCGTACTACTGAGCAGGGAAGCCGTTCGCTGGTCAGTGCT ACCCTCCAGGGCCTCGAAACGCAGGGGAAATGCTGGCGCAGTGAGGGATATCTTGAGTAAGATCATCTTTCACCC TGTTTCAATTGACCATTGCTAATGATTTTATAGTGAGTCGACTGCGCTGACTACTATCCTAGAGGGCGAGGAACT CCAGGAGAAGGCTTGGGAGGAGATCATCGCCGTGCTCGAGGAGCAAGCACCGGAGGTGTCCCTCGTCGCTCGTGG CCTGTACCAGGGCGTTTAA |