© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1190.t1 |
| Gene name | |
| Location | scaffold_01:3139129..3139927 |
| Strand | - |
| Gene length (bp) | 798 |
| Transcript length (bp) | 726 |
| Coding sequence length (bp) | 726 |
| Protein length (aa) | 242 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00096 | zf-C2H2 | Zinc finger, C2H2 type | 1.7E-03 | 214 | 237 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| C2H2 zinc finger |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 13.18 | 4.29 | 22.07 |
| 5d_25C | Five days - 25 degrees Celsius | 14.28 | 4.41 | 24.15 |
| 7d_25C | Seven days - 25 degrees Celsius | 13.39 | 3.17 | 23.62 |
| 10d_25C | Ten days - 25 degrees Celsius | 11.78 | 2.00 | 21.56 |
| 7d_15C | Seven days - 15 degrees Celsius | 6.78 | 0.46 | 13.11 |
| 7d_30C | Seven days - 30 degrees Celsius | 27.55 | 11.22 | 43.88 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.887254 | no |
| 3d_25C | 7d_25C | 0.979966 | no |
| 3d_25C | 7d_15C | 0.142247 | no |
| 3d_25C | 7d_30C | 0.032612 | yes |
| 3d_25C | 10d_25C | 0.853996 | no |
| 5d_25C | 7d_25C | 0.918636 | no |
| 5d_25C | 7d_15C | 0.092370 | no |
| 5d_25C | 7d_30C | 0.061471 | no |
| 5d_25C | 10d_25C | 0.722929 | no |
| 7d_25C | 7d_15C | 0.149878 | no |
| 7d_25C | 7d_30C | 0.059704 | no |
| 7d_25C | 10d_25C | 0.838283 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.287400 | no |
| 7d_30C | 10d_25C | 0.038184 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1190.t1 MAWPTRNNIPSISESEFPWSDIALRDWTDEYLLTSPSTDPSLTTRAITPQPLSYNYQLQPPSAQPPFASSCFPST PVIPSRILSPTPSPLYLNPGTISRSTNHSRSTNHSPTSISSQATTAVHSPASLYGTRWDDLPVSAPIINEPLRQD DASIEPSQTKMPCQSRGPAAKKKGGNDHGTFECKWEGCRYDRFFSHKGVLMRHIETLHVTPRAFKCPRCPHASSR RENLKAHIQAVHKESL* |
| Coding | >Pro_DTO377G3_2|g1190.t1 ATGGCGTGGCCAACACGCAACAACATCCCAAGTATCTCGGAGTCCGAATTTCCGTGGTCTGACATTGCCTTAAGG GATTGGACAGACGAGTATCTTCTCACCTCTCCATCCACTGATCCATCGCTCACCACGAGAGCGATCACCCCTCAA CCTCTTTCATACAACTATCAGCTGCAACCTCCCTCGGCACAGCCCCCCTTTGCCTCCTCATGTTTCCCCTCTACA CCGGTTATCCCCAGCAGAATACTCTCTCCCACTCCCTCCCCATTATATCTAAACCCAGGCACCATCAGCCGGTCT ACCAATCACAGCCGGTCTACCAATCACAGCCCGACATCCATTTCATCCCAAGCAACCACCGCCGTACACTCCCCA GCAAGCCTGTACGGCACCAGATGGGATGATCTCCCCGTCTCGGCACCTATAATAAACGAGCCGCTTCGGCAGGAT GATGCCAGCATAGAGCCTAGCCAGACGAAAATGCCGTGTCAATCCCGTGGCCCTGCAGCCAAGAAGAAGGGTGGC AATGATCACGGGACTTTCGAATGCAAATGGGAGGGCTGTCGATATGACCGTTTTTTCTCGCACAAGGGAGTGCTC ATGCGACACATCGAGACTCTGCATGTCACTCCGCGCGCTTTCAAGTGTCCGCGGTGTCCCCATGCTTCGAGTCGA CGGGAGAATTTGAAGGCGCATATTCAGGCGGTTCATAAGGAGAGTTTGTAA |
| Transcript | >Pro_DTO377G3_2|g1190.t1 ATGGCGTGGCCAACACGCAACAACATCCCAAGTATCTCGGAGTCCGAATTTCCGTGGTCTGACATTGCCTTAAGG GATTGGACAGACGAGTATCTTCTCACCTCTCCATCCACTGATCCATCGCTCACCACGAGAGCGATCACCCCTCAA CCTCTTTCATACAACTATCAGCTGCAACCTCCCTCGGCACAGCCCCCCTTTGCCTCCTCATGTTTCCCCTCTACA CCGGTTATCCCCAGCAGAATACTCTCTCCCACTCCCTCCCCATTATATCTAAACCCAGGCACCATCAGCCGGTCT ACCAATCACAGCCGGTCTACCAATCACAGCCCGACATCCATTTCATCCCAAGCAACCACCGCCGTACACTCCCCA GCAAGCCTGTACGGCACCAGATGGGATGATCTCCCCGTCTCGGCACCTATAATAAACGAGCCGCTTCGGCAGGAT GATGCCAGCATAGAGCCTAGCCAGACGAAAATGCCGTGTCAATCCCGTGGCCCTGCAGCCAAGAAGAAGGGTGGC AATGATCACGGGACTTTCGAATGCAAATGGGAGGGCTGTCGATATGACCGTTTTTTCTCGCACAAGGGAGTGCTC ATGCGACACATCGAGACTCTGCATGTCACTCCGCGCGCTTTCAAGTGTCCGCGGTGTCCCCATGCTTCGAGTCGA CGGGAGAATTTGAAGGCGCATATTCAGGCGGTTCATAAGGAGAGTTTGTAA |
| Gene | >Pro_DTO377G3_2|g1190.t1 ATGGCGTGGCCAACACGCAACAACATCCCAAGTATCTCGGAGTCCGAATTTCCGTGGTCTGACATTGCCTTAAGG GATTGGACAGACGAGTATCTTCTCACCTCTCCATCCACTGATCCATCGCTCACCACGAGAGCGATCACCCCTCAA CCTCTTTCATACAACTATCAGCTGCAACCTCCCTCGGCACAGCCCCCCTTTGCCTCCTCATGTTTCCCCTCTACA CCGGTTATCCCCAGCAGAATACTCTCTCCCACTCCCTCCCCATTATATCTAAACCCAGGCACCATCAGCCGGTCT ACCAATCACAGCCGGTCTACCAATCACAGCCCGACATCCATTTCATCCCAAGCAACCACCGCCGTACACTCCCCA GCAAGCCTGTACGGCACCAGATGGGATGATCTCCCCGTCTCGGCACCTATAATAAACGAGCCGCTTCGGCAGGAT GATGCCAGCATAGAGCCTAGCCAGACGAAAATGCCGTGTCAATCCCGTGGCCCTGCAGCCAAGAAGAAGTATGTA TTTTCGTTTTCTTCTTTCCAAGGACTATCGTAATCAATGTTCTAAACGTGTTTCGCTTCATGCAGGGGTGGCAAT GATCACGGGACTTTCGAATGCAAATGGGAGGGCTGTCGATATGACCGTTTTTTCTCGCACAAGGGAGTGCTCATG CGACACATCGAGACTCTGCATGTCACTCCGCGCGCTTTCAAGTGTCCGCGGTGTCCCCATGCTTCGAGTCGACGG GAGAATTTGAAGGCGCATATTCAGGCGGTTCATAAGGAGAGTTTGTAA |