© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1187.t1 |
| Gene name | |
| Location | scaffold_01:3133569..3135414 |
| Strand | - |
| Gene length (bp) | 1845 |
| Transcript length (bp) | 1515 |
| Coding sequence length (bp) | 1515 |
| Protein length (aa) | 505 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02781 | G6PD_C | Glucose-6-phosphate dehydrogenase, C-terminal domain | 1.7E-116 | 198 | 486 |
| PF00479 | G6PD_N | Glucose-6-phosphate dehydrogenase, NAD binding domain | 5.0E-63 | 17 | 196 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0050661 | NADP binding | Yes |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | Yes |
| GO:0004345 | glucose-6-phosphate dehydrogenase activity | Yes |
| GO:0006006 | glucose metabolic process | Yes |
| GO:0036094 | small molecule binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | No |
| GO:0008150 | biological_process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0019318 | hexose metabolic process | No |
| GO:0000166 | nucleotide binding | No |
| GO:0008152 | metabolic process | No |
| GO:0005488 | binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0003674 | molecular_function | No |
| GO:0005975 | carbohydrate metabolic process | No |
| GO:0044281 | small molecule metabolic process | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0005996 | monosaccharide metabolic process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0044238 | primary metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 697.06 | 379.26 | 1014.86 |
| 5d_25C | Five days - 25 degrees Celsius | 660.23 | 361.70 | 958.76 |
| 7d_25C | Seven days - 25 degrees Celsius | 611.16 | 336.68 | 885.64 |
| 10d_25C | Ten days - 25 degrees Celsius | 637.71 | 350.07 | 925.34 |
| 7d_15C | Seven days - 15 degrees Celsius | 853.94 | 448.75 | 1259.12 |
| 7d_30C | Seven days - 30 degrees Celsius | 503.96 | 278.97 | 728.96 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.889027 | no |
| 3d_25C | 7d_25C | 0.683847 | no |
| 3d_25C | 7d_15C | 0.504110 | no |
| 3d_25C | 7d_30C | 0.203093 | no |
| 3d_25C | 10d_25C | 0.799478 | no |
| 5d_25C | 7d_25C | 0.826890 | no |
| 5d_25C | 7d_15C | 0.374521 | no |
| 5d_25C | 7d_30C | 0.315104 | no |
| 5d_25C | 10d_25C | 0.929048 | no |
| 7d_25C | 7d_15C | 0.219801 | no |
| 7d_25C | 7d_30C | 0.508067 | no |
| 7d_25C | 10d_25C | 0.912734 | no |
| 7d_15C | 7d_30C | 0.035014 | yes |
| 7d_15C | 10d_25C | 0.303848 | no |
| 7d_30C | 10d_25C | 0.397763 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1187.t1 MEMAFSTVELKDDTIIVVLGASGDLAKKKTFPALFGLFRNKFLPKDIHIVGYARTKMDHDEYLKRVRSYIKIPTK EVEDQLDQFCKMCSYVSGQYDQDDCFINLNKHLEEIENKRQSKEQNRVFYMALPPSVFTTVSEQLKRNCYPKRGL ARIIVEKPFGKDLQSSRDLQKALEPNWKEEEIFRIDHYLGKEMVKNILILRFGNEFFNATWNRRHIDNVQITFKE PFGTEGRGGYFDEFGIIRDVMQNHLLQVLTLLAMERPISFSSEDIRDEKVRVLRAMDAIEPKNVIIGQYGRSLEG SKPGYLEDDTVPKDSRCPTFCALVAYIKNERWDGVPFILKAGKALNEQKTEVRIQFKDVTSGIFKDIPRNELVIR VQPNESVYIKMNSKLPGLSMQTVVTELDLTYRRRFSDLKIPEAYESLILDAFKGDHSNFVRDDELDASWRIFTPL LHYLDDNKEIIPMEYPYGSRGPAVLDDFTASYGYKFSDAAGYQWPVTTSAPNRL* |
| Coding | >Pro_DTO377G3_2|g1187.t1 ATGGAGATGGCATTCAGCACCGTCGAACTTAAAGATGATACCATCATCGTGGTACTAGGCGCATCCGGTGATCTG GCGAAGAAGAAGACCTTCCCTGCACTCTTTGGCCTTTTCCGCAACAAATTCCTGCCCAAGGACATTCATATCGTC GGATATGCGCGGACAAAGATGGACCACGACGAGTACCTCAAGCGCGTTCGCTCGTACATCAAGATTCCCACAAAG GAGGTTGAGGATCAATTAGATCAGTTCTGCAAGATGTGTTCCTACGTTTCCGGCCAATATGATCAAGATGATTGT TTTATCAACCTGAACAAGCACCTTGAGGAGATCGAGAACAAACGCCAATCGAAGGAGCAGAACCGCGTGTTCTAC ATGGCACTGCCACCCAGTGTCTTCACCACCGTGTCCGAGCAGCTGAAGCGCAACTGCTATCCTAAGAGAGGCCTC GCTCGCATTATTGTCGAGAAACCCTTCGGAAAGGACCTACAGAGCTCGCGCGACCTCCAGAAGGCTTTGGAGCCT AACTGGAAGGAGGAGGAGATCTTCCGTATCGATCACTACCTTGGTAAGGAGATGGTCAAGAACATTCTTATTCTG CGATTCGGCAACGAGTTCTTCAACGCTACATGGAACCGCCGCCACATCGATAACGTTCAGATTACATTCAAGGAG CCTTTCGGCACCGAGGGCCGTGGCGGCTACTTTGATGAGTTCGGTATTATCCGTGATGTTATGCAGAACCACCTG CTGCAGGTTCTCACACTGCTCGCCATGGAGCGCCCCATTTCCTTCTCTTCCGAGGATATCCGTGATGAGAAGGTC CGTGTCCTTCGCGCTATGGACGCCATTGAGCCCAAGAACGTCATCATCGGCCAGTACGGCCGCTCCCTCGAAGGC AGCAAGCCCGGTTACCTCGAGGACGATACTGTGCCTAAGGATTCACGTTGCCCGACTTTCTGCGCTCTGGTTGCA TACATTAAGAATGAGCGTTGGGACGGCGTTCCCTTCATCCTCAAGGCCGGAAAGGCCCTGAACGAGCAGAAGACC GAGGTCCGCATCCAGTTCAAGGATGTCACTTCCGGTATCTTCAAGGACATTCCCCGTAACGAGCTTGTCATCCGT GTTCAGCCCAACGAGTCCGTCTATATTAAGATGAACTCCAAGCTGCCCGGTCTCTCCATGCAGACAGTGGTTACC GAGCTGGACTTGACCTACCGCCGTCGCTTCTCCGACCTTAAGATCCCCGAGGCCTACGAGTCCCTGATTCTGGAC GCCTTCAAGGGCGACCACTCCAACTTTGTCCGTGACGATGAGTTGGATGCCAGCTGGCGTATCTTCACTCCTCTC CTGCACTACTTGGATGACAACAAGGAGATCATCCCCATGGAGTACCCCTACGGCTCCCGTGGACCCGCCGTTCTT GATGACTTCACTGCTTCATACGGCTACAAGTTCAGCGACGCCGCTGGCTACCAGTGGCCCGTCACCACCTCGGCC CCCAACCGGCTGTAG |
| Transcript | >Pro_DTO377G3_2|g1187.t1 ATGGAGATGGCATTCAGCACCGTCGAACTTAAAGATGATACCATCATCGTGGTACTAGGCGCATCCGGTGATCTG GCGAAGAAGAAGACCTTCCCTGCACTCTTTGGCCTTTTCCGCAACAAATTCCTGCCCAAGGACATTCATATCGTC GGATATGCGCGGACAAAGATGGACCACGACGAGTACCTCAAGCGCGTTCGCTCGTACATCAAGATTCCCACAAAG GAGGTTGAGGATCAATTAGATCAGTTCTGCAAGATGTGTTCCTACGTTTCCGGCCAATATGATCAAGATGATTGT TTTATCAACCTGAACAAGCACCTTGAGGAGATCGAGAACAAACGCCAATCGAAGGAGCAGAACCGCGTGTTCTAC ATGGCACTGCCACCCAGTGTCTTCACCACCGTGTCCGAGCAGCTGAAGCGCAACTGCTATCCTAAGAGAGGCCTC GCTCGCATTATTGTCGAGAAACCCTTCGGAAAGGACCTACAGAGCTCGCGCGACCTCCAGAAGGCTTTGGAGCCT AACTGGAAGGAGGAGGAGATCTTCCGTATCGATCACTACCTTGGTAAGGAGATGGTCAAGAACATTCTTATTCTG CGATTCGGCAACGAGTTCTTCAACGCTACATGGAACCGCCGCCACATCGATAACGTTCAGATTACATTCAAGGAG CCTTTCGGCACCGAGGGCCGTGGCGGCTACTTTGATGAGTTCGGTATTATCCGTGATGTTATGCAGAACCACCTG CTGCAGGTTCTCACACTGCTCGCCATGGAGCGCCCCATTTCCTTCTCTTCCGAGGATATCCGTGATGAGAAGGTC CGTGTCCTTCGCGCTATGGACGCCATTGAGCCCAAGAACGTCATCATCGGCCAGTACGGCCGCTCCCTCGAAGGC AGCAAGCCCGGTTACCTCGAGGACGATACTGTGCCTAAGGATTCACGTTGCCCGACTTTCTGCGCTCTGGTTGCA TACATTAAGAATGAGCGTTGGGACGGCGTTCCCTTCATCCTCAAGGCCGGAAAGGCCCTGAACGAGCAGAAGACC GAGGTCCGCATCCAGTTCAAGGATGTCACTTCCGGTATCTTCAAGGACATTCCCCGTAACGAGCTTGTCATCCGT GTTCAGCCCAACGAGTCCGTCTATATTAAGATGAACTCCAAGCTGCCCGGTCTCTCCATGCAGACAGTGGTTACC GAGCTGGACTTGACCTACCGCCGTCGCTTCTCCGACCTTAAGATCCCCGAGGCCTACGAGTCCCTGATTCTGGAC GCCTTCAAGGGCGACCACTCCAACTTTGTCCGTGACGATGAGTTGGATGCCAGCTGGCGTATCTTCACTCCTCTC CTGCACTACTTGGATGACAACAAGGAGATCATCCCCATGGAGTACCCCTACGGCTCCCGTGGACCCGCCGTTCTT GATGACTTCACTGCTTCATACGGCTACAAGTTCAGCGACGCCGCTGGCTACCAGTGGCCCGTCACCACCTCGGCC CCCAACCGGCTGTAG |
| Gene | >Pro_DTO377G3_2|g1187.t1 ATGGAGATGGCATTCAGCACCGTCGAACTTAAAGATGATACCATCATCGTGGTACTAGGCGCATCCGGTGATCTG GCGAAGAAGAAGACCGTGCGTACCCCTTCCATAGGTGGTGATGACTCTTGACGTACTGACCAGCTTATAGTTCCC TGCACTCTTTGGCCTTGTATGTGCTATTTCTACTGAGCATCCACCGGTTATCCACTGACAAGTATGACCTAGTTC CGCAACAAATTCCTGCCCAAGGACATTCATATCGTCGGATATGCGCGGACAAAGATGGACCACGACGAGTACCTC AAGCGCGTTCGCTCGTACATCAAGATTCCCACAAAGGAGGTTGAGGATCAATTAGATCAGTTCTGCAAGATGTGT TCCTACGTTTCCGGCCAATATGATCAAGATGATTGTTTTATCAACCTGAACAAGCACCTTGAGGAGATCGAGAAC AAACGCCAATCGAAGGAGCAGAACCGCGTGTTCTACATGGCACTGCCACCCAGTGTCTTCACCACCGTGTCCGAG CAGCTGAAGCGCAACTGCTATCCTAAGAGAGGCCTCGCTCGCATTATTGTGAGTTTCTCGGGACAAGCTGGCTAG AACGAACCCCATATTGATACGCCTACTCTTTCTTATAGGTCGAGAAACCCTTCGGAAAGGACCTACAGAGCTCGC GCGACCTCCAGAAGGCTTTGGAGCCTAACTGGAAGGAGGAGGAGATCTTCCGTATCGATCACTACCTTGGTAAGG AGATGGTCAAGAACATTCTTATTCTGCGATTCGGCAACGAGTTCTTCAACGCTACATGGAACCGCCGCCACATCG ATAACGTTCAGGTATGTGAAGCGATCTCAGTCCGGAGTTCCGGTTCTAATACCGGCTACAGATTACATTCAAGGA GCCTTTCGGCACCGAGGGCCGTGGCGGCTACTTTGATGAGTTCGGTATTATCCGTGATGTTATGCAGAACCGTAA GTCATTCATCATACTGAATAGATATAGAAAGATGCTAACATTTTGATAGACCTGCTGCAGGTTCTCACACTGCTC GCCATGGAGCGCCCCATTTCCTTCTCTTCCGAGGATATCCGTGATGAGAAGGTCCGTGTCCTTCGCGCTATGGAC GCCATTGAGCCCAAGAACGTCATCATCGGCCAGTACGGCCGCTCCCTCGAAGGCAGCAAGCCCGGTTACCTCGAG GACGATACTGTGCCTAAGGATTCACGTTGCCCGACTTTCTGCGCTCTGGTTGCATACATTAAGAATGAGCGTTGG GACGGCGTTCCCTTCATCCTCAAGGCCGGAAAGGCCCTGAACGAGCAGAAGACCGAGGTCCGCATCCAGTTCAAG GATGTCACTTCCGGTATCTTCAAGGACATTCCCCGTAACGAGCTTGTCATCCGTGTTCAGCCCAACGAGTCCGTC TATATTAAGATGAACTCCAAGCTGCCCGGTCTCTCCATGCAGACAGTGGTTACCGAGCTGGACTTGACCTACCGC CGTCGCTTCTCCGACCTTAAGATCCCCGAGGCCTACGAGTCCCTGATTCTGGACGCCTTCAAGGGCGACCACTCC AACTTTGTCCGTGACGATGAGTTGGATGCCAGCTGGCGTATCTTCACTCCTCTCCTGCACTACTTGGATGACAAC AAGGAGATCATCCCCATGGAGTACCCCTACGGTGAGTTTTCCCTCTTCGTTCTTTTCTAACTCTAGCTAATTCAC GTTCCAGGCTCCCGTGGACCCGCCGTTCTTGATGACTTCACTGCTTCATACGGCTACAAGTTCAGCGACGCCGCT GGCTACCAGTGGCCCGTCACCACCTCGGCCCCCAACCGGCTGTAG |