© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g1186.t1 |
| Gene name | |
| Location | scaffold_01:3130104..3132328 |
| Strand | - |
| Gene length (bp) | 2224 |
| Transcript length (bp) | 1701 |
| Coding sequence length (bp) | 1701 |
| Protein length (aa) | 567 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13347 | MFS_2 | MFS/sugar transport protein | 2.3E-08 | 30 | 254 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 38 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 20 | 37 | 17 |
| 2 | 57 | 79 | 22 |
| 3 | 92 | 114 | 22 |
| 4 | 129 | 146 | 17 |
| 5 | 175 | 197 | 22 |
| 6 | 207 | 224 | 17 |
| 7 | 266 | 288 | 22 |
| 8 | 311 | 333 | 22 |
| 9 | 369 | 386 | 17 |
| 10 | 391 | 413 | 22 |
| 11 | 489 | 511 | 22 |
| 12 | 538 | 555 | 17 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 32.88 | 18.97 | 46.79 |
| 5d_25C | Five days - 25 degrees Celsius | 13.03 | 6.09 | 19.97 |
| 7d_25C | Seven days - 25 degrees Celsius | 17.16 | 8.57 | 25.75 |
| 10d_25C | Ten days - 25 degrees Celsius | 6.45 | 2.37 | 10.52 |
| 7d_15C | Seven days - 15 degrees Celsius | 13.69 | 6.03 | 21.36 |
| 7d_30C | Seven days - 30 degrees Celsius | 9.92 | 4.33 | 15.51 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.000700 | yes |
| 3d_25C | 7d_25C | 0.010735 | yes |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.395211 | no |
| 5d_25C | 7d_15C | 0.916981 | no |
| 5d_25C | 7d_30C | 0.420801 | no |
| 5d_25C | 10d_25C | 0.029538 | yes |
| 7d_25C | 7d_15C | 0.515600 | no |
| 7d_25C | 7d_30C | 0.051659 | no |
| 7d_25C | 10d_25C | 0.001278 | yes |
| 7d_15C | 7d_30C | 0.330124 | no |
| 7d_15C | 10d_25C | 0.017485 | yes |
| 7d_30C | 10d_25C | 0.218111 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1186.t1 MPQAARWAGTPSIKGRNQSTRMALLTFSLVGLQFTWGTEMTYCTPYLLQLGLTKSKTSLVWIAGPLSGLIIQPLI GVIADRSRSKWGRRRPFMIFGSFVVAFCLLVLGWTSEIVGLFVKDPEKAKNGTIALAVVSIYAVDFSINVVQACC RGLIVDTLPIPSQQAGSAWAGRMSAIGQLFAYVVGAIDTVSIFGTFLGDTQFKQMTVIAALSLVLAVAVTSYSVK ERVLISARDDGSAGAIQVLSQLFKTTFELPPRIQAICWAQFWAWIGWFPFLFYSTTWVGETYFRYEVPKDDMAKA TDMLGEVGRVGSLSLTVFSSITVLSSVLLPFCIMQPDSKRIRFTARPPPKVAAVLKAISAIRPDLQTAWLISHVM FAATMIFAPLAHSRAFATFLVAVCGIPWAISGWAPFAFMGVEINKLTMGGYSPAIPSSRSGVTMITSASLRNSAA DTELDVLRLNHHDSTDSDTDEEDRASNIPSTGELAGIYLGVLNVYTTLPQFVGTFISWIVFSLLEPGAEPAADNS SDTQWMNLDKERYNAISICLFIGAISALVAAEATRRLRFVL* |
| Coding | >Pro_DTO377G3_2|g1186.t1 ATGCCGCAGGCTGCGCGATGGGCGGGGACGCCCTCCATCAAGGGTCGGAATCAGTCTACGAGGATGGCGCTTTTG ACGTTTAGTTTGGTCGGATTGCAGTTCACGTGGGGTACTGAGATGACTTATTGTACACCTTACCTTCTTCAGCTC GGTCTGACAAAGTCTAAGACTTCGTTGGTGTGGATTGCTGGCCCGTTATCTGGGTTGATTATCCAGCCTCTTATT GGAGTTATTGCCGATCGATCACGATCGAAATGGGGTCGGCGTAGACCTTTCATGATCTTTGGCTCGTTTGTTGTC GCTTTCTGTCTGCTTGTCTTAGGGTGGACATCAGAGATTGTTGGTTTATTTGTAAAAGACCCGGAAAAGGCCAAG AATGGCACAATTGCCCTGGCTGTAGTGAGTATTTATGCGGTGGATTTCTCCATCAACGTTGTTCAAGCATGCTGT CGCGGTCTGATTGTGGATACGCTACCGATTCCATCGCAACAAGCTGGGTCCGCATGGGCCGGGAGAATGTCCGCC ATTGGCCAGCTCTTTGCTTATGTGGTTGGTGCTATCGATACCGTGAGCATCTTTGGTACTTTCCTTGGAGATACG CAGTTCAAGCAGATGACTGTGATCGCTGCTTTGTCGTTGGTGTTGGCTGTGGCAGTCACTTCATACTCGGTAAAA GAGCGAGTCCTTATCTCGGCAAGGGATGATGGAAGTGCCGGTGCTATTCAGGTCCTCTCCCAGCTGTTCAAAACT ACTTTCGAACTGCCGCCTCGCATTCAAGCAATTTGCTGGGCCCAATTTTGGGCTTGGATTGGCTGGTTCCCCTTC CTCTTCTACAGCACAACCTGGGTTGGTGAAACATACTTCCGTTATGAAGTACCAAAAGACGACATGGCCAAAGCA ACCGATATGCTTGGTGAAGTCGGCCGCGTGGGCAGTCTATCATTAACGGTCTTCTCATCCATAACAGTCCTCAGC TCTGTACTCCTACCCTTTTGCATCATGCAGCCCGATAGCAAGCGGATACGCTTCACCGCACGACCCCCGCCAAAG GTCGCAGCGGTTCTCAAAGCCATCAGCGCAATCCGACCAGACCTCCAAACCGCCTGGCTGATATCCCACGTCATG TTCGCCGCCACAATGATATTCGCCCCTCTAGCACACTCGCGCGCCTTCGCAACCTTCCTAGTAGCAGTATGCGGT ATCCCCTGGGCAATCAGCGGCTGGGCCCCCTTCGCTTTCATGGGCGTGGAAATCAACAAACTAACAATGGGCGGC TATTCCCCCGCAATCCCATCCTCACGATCCGGCGTGACAATGATCACCTCCGCCAGCCTCCGCAACTCCGCCGCC GACACCGAGCTGGACGTTCTCCGACTGAACCACCACGATTCCACCGACAGCGACACCGACGAGGAGGACCGCGCC TCCAACATCCCGTCAACAGGAGAACTGGCTGGCATCTACCTGGGCGTGCTGAATGTGTACACGACGCTACCCCAA TTCGTCGGCACTTTCATCAGCTGGATCGTCTTCAGCCTCCTCGAACCAGGCGCCGAGCCCGCGGCCGACAACAGT TCGGACACGCAGTGGATGAACCTGGACAAGGAGAGGTATAACGCCATCTCCATATGTCTCTTCATCGGGGCAATA AGTGCTCTCGTGGCGGCTGAGGCTACCCGTCGACTGCGGTTTGTACTATGA |
| Transcript | >Pro_DTO377G3_2|g1186.t1 ATGCCGCAGGCTGCGCGATGGGCGGGGACGCCCTCCATCAAGGGTCGGAATCAGTCTACGAGGATGGCGCTTTTG ACGTTTAGTTTGGTCGGATTGCAGTTCACGTGGGGTACTGAGATGACTTATTGTACACCTTACCTTCTTCAGCTC GGTCTGACAAAGTCTAAGACTTCGTTGGTGTGGATTGCTGGCCCGTTATCTGGGTTGATTATCCAGCCTCTTATT GGAGTTATTGCCGATCGATCACGATCGAAATGGGGTCGGCGTAGACCTTTCATGATCTTTGGCTCGTTTGTTGTC GCTTTCTGTCTGCTTGTCTTAGGGTGGACATCAGAGATTGTTGGTTTATTTGTAAAAGACCCGGAAAAGGCCAAG AATGGCACAATTGCCCTGGCTGTAGTGAGTATTTATGCGGTGGATTTCTCCATCAACGTTGTTCAAGCATGCTGT CGCGGTCTGATTGTGGATACGCTACCGATTCCATCGCAACAAGCTGGGTCCGCATGGGCCGGGAGAATGTCCGCC ATTGGCCAGCTCTTTGCTTATGTGGTTGGTGCTATCGATACCGTGAGCATCTTTGGTACTTTCCTTGGAGATACG CAGTTCAAGCAGATGACTGTGATCGCTGCTTTGTCGTTGGTGTTGGCTGTGGCAGTCACTTCATACTCGGTAAAA GAGCGAGTCCTTATCTCGGCAAGGGATGATGGAAGTGCCGGTGCTATTCAGGTCCTCTCCCAGCTGTTCAAAACT ACTTTCGAACTGCCGCCTCGCATTCAAGCAATTTGCTGGGCCCAATTTTGGGCTTGGATTGGCTGGTTCCCCTTC CTCTTCTACAGCACAACCTGGGTTGGTGAAACATACTTCCGTTATGAAGTACCAAAAGACGACATGGCCAAAGCA ACCGATATGCTTGGTGAAGTCGGCCGCGTGGGCAGTCTATCATTAACGGTCTTCTCATCCATAACAGTCCTCAGC TCTGTACTCCTACCCTTTTGCATCATGCAGCCCGATAGCAAGCGGATACGCTTCACCGCACGACCCCCGCCAAAG GTCGCAGCGGTTCTCAAAGCCATCAGCGCAATCCGACCAGACCTCCAAACCGCCTGGCTGATATCCCACGTCATG TTCGCCGCCACAATGATATTCGCCCCTCTAGCACACTCGCGCGCCTTCGCAACCTTCCTAGTAGCAGTATGCGGT ATCCCCTGGGCAATCAGCGGCTGGGCCCCCTTCGCTTTCATGGGCGTGGAAATCAACAAACTAACAATGGGCGGC TATTCCCCCGCAATCCCATCCTCACGATCCGGCGTGACAATGATCACCTCCGCCAGCCTCCGCAACTCCGCCGCC GACACCGAGCTGGACGTTCTCCGACTGAACCACCACGATTCCACCGACAGCGACACCGACGAGGAGGACCGCGCC TCCAACATCCCGTCAACAGGAGAACTGGCTGGCATCTACCTGGGCGTGCTGAATGTGTACACGACGCTACCCCAA TTCGTCGGCACTTTCATCAGCTGGATCGTCTTCAGCCTCCTCGAACCAGGCGCCGAGCCCGCGGCCGACAACAGT TCGGACACGCAGTGGATGAACCTGGACAAGGAGAGGTATAACGCCATCTCCATATGTCTCTTCATCGGGGCAATA AGTGCTCTCGTGGCGGCTGAGGCTACCCGTCGACTGCGGTTTGTACTATGA |
| Gene | >Pro_DTO377G3_2|g1186.t1 ATGCCGCAGGCTGCGCGATGGGCGGGGACGCCCTCCATCAAGGGTCGGAATCAGTCTACGAGGATGGCGCTTTTG ACGTTTAGTTTGGTCGGATTGCAGTGCGTATCGTCCCTCTCTGTTTCGGCGTTTGGATATATGGATGTAGATGTT GCGCGACATTCCATTGTCTAGCTTTGCTTTTTTTTTTTTTTTGGTGCAATCGCAATCGCAATTGGAGGATTCCAT GGATCGTTGTTTTGTGTCTGTGGCTGACTTGGTGTTTTCTAGGTTCACGTGGGGTACTGAGATGACTTGTAAGAG CTATTCACATCCCGTTCCGAATAGTGCTTAGGTGCTTAGGGTATGATCGCTGACTTGATCGCTGCTAGATTGTAC ACCTTACCTTCTTCAGCTCGGTCTGACAAAGTCTAAGACTTCGTTGGTGTGGATTGCTGGCCCGTTATCTGGGTT GATTATCCAGCCTCTTATTGGAGTTATTGCCGATCGATCACGATCGAAATGGGGTCGGCGTAGACCTTTCATGAT CTTTGGCTCGTTTGTTGTCGCTTTCTGTCTGCTTGTCTTAGGGTGGACATCAGAGATTGTTGGTTTATTTGTAAA AGACCCGGAAAAGGTATATATCGTGTTTATCGGAACCCTCACCTGGCTAAATCTATTTACGTGGAAGCTAATATT GGTTTTCTACAGGCCAAGAATGGCACAATTGCCCTGGCTGTAGTGAGTATTTATGCGGTGGATTTCTCCATCAAC GTTGGTAAGTGGCACATGTACTCGCACTAATTGAAGGTGGCTTACAATATCTTAGTTCAAGCATGCTGTCGCGGT CTGATTGTGGATACGCTACCGATTCCATCGCAACAAGCTGGGTCCGCATGGGGTATGGCGCTTCCCCATATGTCT CCGCCCAAAACACACTGACCTTTCTTTAGCCGGGAGAATGTCCGCCATTGGCCAGCTCTTTGCTTATGTGGTTGG TGCTATCGATACCGTGAGCATCTTTGGTACTTTCCTTGGAGATACGCAGTTCAAGCAGATGACTGTGATCGCTGC TTTGTCGTTGGTGTTGGCTGTGGCAGTCACTTCATACTCGGTAAAAGAGCGAGTCCTTATCTCGGCAAGGTGAGT TGAGCTCGAACCGATAATTATTGTCGTCAACTAATGTTTTGGGATAGGGATGATGGAAGTGCCGGTGCTATTCAG GTCCTCTCCCAGCTGTTCAAAACTACTTTCGAACTGCCGCCTCGCATTCAAGCAATTTGCTGGGCCCAATTTTGG GCTTGGATTGGTATGAAATTCGGCATTTACTAGGAAATCAGCAAGCTAACATTAACTAGGCTGGTTCCCCTTCCT CTTCTACAGCACAACCTGGGTTGGTGAAACATACTTCCGTTATGAAGTACCAAAAGACGACATGGCCAAAGCAAC CGATATGCTTGGTGAAGTCGGCCGCGTGGGCAGTCTATCATTAACGGTCTTCTCATCCATAACAGTCCTCAGCTC TGTACTCCTACCCTTTTGCATCATGCAGCCCGATAGCAAGCGGATACGCTTCACCGCACGACCCCCGCCAAAGGT CGCAGCGGTTCTCAAAGCCATCAGCGCAATCCGACCAGACCTCCAAACCGCCTGGCTGATATCCCACGTCATGTT CGCCGCCACAATGATATTCGCCCCTCTAGCACACTCGCGCGCCTTCGCAACCTTCCTAGTAGCAGTATGCGGTAT CCCCTGGGCAATCAGCGGCTGGGCCCCCTTCGCTTTCATGGGCGTGGAAATCAACAAACTAACAATGGGCGGCTA TTCCCCCGCAATCCCATCCTCACGATCCGGCGTGACAATGATCACCTCCGCCAGCCTCCGCAACTCCGCCGCCGA CACCGAGCTGGACGTTCTCCGACTGAACCACCACGATTCCACCGACAGCGACACCGACGAGGAGGACCGCGCCTC CAACATCCCGTCAACAGGAGAACTGGCTGGCATCTACCTGGGCGTGCTGAATGTGTACACGACGCTACCCCAATT CGTCGGCACTTTCATCAGCTGGATCGTCTTCAGCCTCCTCGAACCAGGCGCCGAGCCCGCGGCCGACAACAGTTC GGACACGCAGTGGATGAACCTGGACAAGGAGAGGTATAACGCCATCTCCATATGTCTCTTCATCGGGGCAATAAG TGCTCTCGTGGCGGCTGAGGCTACCCGTCGACTGCGGTTTGTACTATGA |