© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1184.t1 |
| Gene name | |
| Location | scaffold_01:3122893..3124793 |
| Strand | - |
| Gene length (bp) | 1900 |
| Transcript length (bp) | 1479 |
| Coding sequence length (bp) | 1479 |
| Protein length (aa) | 493 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 2.0E-28 | 53 | 418 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 52 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 44 | 61 | 17 |
| 2 | 86 | 108 | 22 |
| 3 | 115 | 134 | 19 |
| 4 | 139 | 161 | 22 |
| 5 | 174 | 196 | 22 |
| 6 | 206 | 228 | 22 |
| 7 | 278 | 300 | 22 |
| 8 | 313 | 335 | 22 |
| 9 | 340 | 362 | 22 |
| 10 | 366 | 388 | 22 |
| 11 | 400 | 422 | 22 |
| 12 | 432 | 454 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 2.48 | 0.51 | 4.45 |
| 5d_25C | Five days - 25 degrees Celsius | 1.90 | 0.26 | 3.55 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.72 | 0.00 | 1.48 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.13 | 0.00 | 0.34 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.92 | 0.01 | 1.84 |
| 7d_30C | Seven days - 30 degrees Celsius | 0.11 | 0.00 | 0.33 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.650410 | no |
| 3d_25C | 7d_25C | 0.014676 | yes |
| 3d_25C | 7d_15C | 0.054049 | no |
| 3d_25C | 7d_30C | 0.060029 | no |
| 3d_25C | 10d_25C | 0.035881 | yes |
| 5d_25C | 7d_25C | 0.071695 | no |
| 5d_25C | 7d_15C | 0.199047 | no |
| 5d_25C | 7d_30C | 0.060388 | no |
| 5d_25C | 10d_25C | 0.038184 | yes |
| 7d_25C | 7d_15C | 0.748395 | no |
| 7d_25C | 7d_30C | 0.119073 | no |
| 7d_25C | 10d_25C | 0.093559 | no |
| 7d_15C | 7d_30C | 0.087584 | no |
| 7d_15C | 10d_25C | 0.068588 | no |
| 7d_30C | 10d_25C | 1.000000 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1184.t1 MMNQSDTKTADMQLDESNPKTVMETGTSAIHIDPAIERRVRWKIDLVVLPLMCLIYFSQYLDKQSLSYAGVFGLI DDLHLVGTQFAWLGSIFYVGQLASEFPAIYLMSRLPLAKFVSCLIILWGGVCMCLAGATTFSSFMGVRFALGLAE GAVSPAFVTLTSLWYKKSEHPMRIGLWISCNGLAQVIGALMMYGIGHNTALAIAQWKAMFIICGALTVFFGILFF FLMPAGPDSAWFLTPEERQVATQRLRAETEGGDQTTFSISQLKETAMDIRAYLSFLFGLLITLPSPVIAFASLII YSLGYTNFDTMLYTSPAGAVQMVFIWVGIGLCYIWPNRRCAITIGLTIIPLVGIILLFTLPLSSGWGMIVASWLA SVISNILTVILSLNASNIRGNTKKAIVNALFFVGYAIGAIVGPLLWNTKNAPRYRSGLVLALVSWLVFIPTVGVY WFTCARDNKRRSTMGMDIFEYAEEVTGKDLTDKEDKNFRYNL* |
| Coding | >Pro_DTO377G3_2|g1184.t1 ATGATGAATCAATCGGATACCAAAACCGCAGATATGCAATTGGACGAATCCAATCCGAAGACTGTTATGGAAACA GGCACTTCGGCAATCCACATTGACCCTGCGATTGAGAGACGGGTCAGATGGAAGATTGATTTGGTGGTCTTGCCA CTGATGTGCTTGATTTACTTCTCTCAGTACCTTGACAAGCAGAGTCTAAGTTACGCTGGTGTGTTCGGATTGATA GATGACCTACACCTTGTGGGCACACAGTTCGCCTGGCTAGGGTCCATCTTCTACGTTGGGCAGCTGGCGTCGGAA TTCCCGGCCATCTACTTGATGAGTCGTCTTCCGCTTGCCAAATTTGTATCCTGTCTTATTATACTCTGGGGTGGA GTTTGCATGTGTCTGGCAGGAGCAACAACCTTCTCATCTTTCATGGGTGTTCGATTCGCCCTTGGATTGGCTGAA GGTGCGGTCTCGCCTGCCTTTGTGACGCTCACCAGTCTCTGGTATAAGAAAAGCGAGCATCCCATGCGCATCGGT CTATGGATCAGCTGCAACGGGCTGGCTCAGGTCATCGGTGCTCTAATGATGTATGGTATCGGTCACAACACGGCA TTGGCCATTGCCCAATGGAAAGCGATGTTCATCATCTGTGGAGCTCTCACAGTCTTCTTTGGAATCCTATTCTTC TTCTTGATGCCCGCTGGTCCCGACTCAGCGTGGTTCCTCACCCCCGAAGAGCGACAGGTAGCAACACAACGATTG CGAGCGGAAACCGAAGGAGGAGACCAGACAACTTTCTCTATCTCACAATTGAAAGAGACAGCTATGGATATCAGA GCGTATTTGAGTTTCCTATTTGGGCTTCTCATCACACTACCTTCGCCAGTCATTGCATTCGCTTCCCTTATCATC TACTCTTTGGGCTACACAAATTTCGATACCATGCTATACACTTCACCAGCAGGTGCAGTTCAGATGGTCTTTATT TGGGTCGGAATAGGTCTCTGCTATATTTGGCCGAATCGTCGATGTGCGATCACCATCGGGCTTACAATCATCCCG CTCGTCGGAATCATTCTACTATTCACGCTTCCCTTGTCCTCGGGATGGGGTATGATTGTTGCATCGTGGTTGGCC TCCGTCATCTCAAACATCTTAACGGTCATCCTCAGTCTAAACGCTTCCAATATTCGTGGAAATACCAAAAAGGCC ATCGTCAACGCTTTGTTCTTCGTTGGCTACGCTATCGGTGCTATAGTTGGACCATTACTCTGGAACACGAAAAAT GCACCCCGGTATCGCAGTGGTCTCGTCTTGGCTCTGGTTAGCTGGCTTGTGTTCATTCCGACCGTCGGAGTGTAT TGGTTCACGTGTGCTCGTGACAATAAACGTCGGTCTACAATGGGGATGGATATCTTCGAGTACGCGGAGGAGGTC ACTGGAAAGGACTTGACAGACAAGGAAGACAAGAATTTCCGGTATAACCTTTGA |
| Transcript | >Pro_DTO377G3_2|g1184.t1 ATGATGAATCAATCGGATACCAAAACCGCAGATATGCAATTGGACGAATCCAATCCGAAGACTGTTATGGAAACA GGCACTTCGGCAATCCACATTGACCCTGCGATTGAGAGACGGGTCAGATGGAAGATTGATTTGGTGGTCTTGCCA CTGATGTGCTTGATTTACTTCTCTCAGTACCTTGACAAGCAGAGTCTAAGTTACGCTGGTGTGTTCGGATTGATA GATGACCTACACCTTGTGGGCACACAGTTCGCCTGGCTAGGGTCCATCTTCTACGTTGGGCAGCTGGCGTCGGAA TTCCCGGCCATCTACTTGATGAGTCGTCTTCCGCTTGCCAAATTTGTATCCTGTCTTATTATACTCTGGGGTGGA GTTTGCATGTGTCTGGCAGGAGCAACAACCTTCTCATCTTTCATGGGTGTTCGATTCGCCCTTGGATTGGCTGAA GGTGCGGTCTCGCCTGCCTTTGTGACGCTCACCAGTCTCTGGTATAAGAAAAGCGAGCATCCCATGCGCATCGGT CTATGGATCAGCTGCAACGGGCTGGCTCAGGTCATCGGTGCTCTAATGATGTATGGTATCGGTCACAACACGGCA TTGGCCATTGCCCAATGGAAAGCGATGTTCATCATCTGTGGAGCTCTCACAGTCTTCTTTGGAATCCTATTCTTC TTCTTGATGCCCGCTGGTCCCGACTCAGCGTGGTTCCTCACCCCCGAAGAGCGACAGGTAGCAACACAACGATTG CGAGCGGAAACCGAAGGAGGAGACCAGACAACTTTCTCTATCTCACAATTGAAAGAGACAGCTATGGATATCAGA GCGTATTTGAGTTTCCTATTTGGGCTTCTCATCACACTACCTTCGCCAGTCATTGCATTCGCTTCCCTTATCATC TACTCTTTGGGCTACACAAATTTCGATACCATGCTATACACTTCACCAGCAGGTGCAGTTCAGATGGTCTTTATT TGGGTCGGAATAGGTCTCTGCTATATTTGGCCGAATCGTCGATGTGCGATCACCATCGGGCTTACAATCATCCCG CTCGTCGGAATCATTCTACTATTCACGCTTCCCTTGTCCTCGGGATGGGGTATGATTGTTGCATCGTGGTTGGCC TCCGTCATCTCAAACATCTTAACGGTCATCCTCAGTCTAAACGCTTCCAATATTCGTGGAAATACCAAAAAGGCC ATCGTCAACGCTTTGTTCTTCGTTGGCTACGCTATCGGTGCTATAGTTGGACCATTACTCTGGAACACGAAAAAT GCACCCCGGTATCGCAGTGGTCTCGTCTTGGCTCTGGTTAGCTGGCTTGTGTTCATTCCGACCGTCGGAGTGTAT TGGTTCACGTGTGCTCGTGACAATAAACGTCGGTCTACAATGGGGATGGATATCTTCGAGTACGCGGAGGAGGTC ACTGGAAAGGACTTGACAGACAAGGAAGACAAGAATTTCCGGTATAACCTTTGA |
| Gene | >Pro_DTO377G3_2|g1184.t1 ATGATGAATCAATCGGATACCAAAACCGCAGATATGCAATTGGACGAATCCAATCCGAAGACTGTTATGGAAACA GGCACTTCGGCAATCCACATTGACCCTGCGATTGAGAGACGGGTCAGATGGAAGATTGATTTGGTGGTCTTGCCA CTGGTAAGCAATTGTCCTTGTTCGATATCATGGGAATGGGTGCTGATCGTGAGAGGCTTGAAGATGTGCTTGATT TACTTCTCTCAGTGTAAGTTGATTCATGTTTTGGTTCCTCTTGCTTTTGGATACCGCTAATATCCCGCATCTAGA CCTTGACAAGCAGAGTCTAAGTTACGCTGGTGTGTTCGGATTGATAGATGACCTACACCTTGTGGGCACACAGTT CGCCTGGCTAGGGTCCATCTTCTACGTTGGGCAGCTGGCGTCGGAATTCCCGGCCATCTACTTGATGAGTCGTCT TCCGCTTGCCAAATTTGTATCCTGTCTTATGTGAGTTTCGAGCAATTTCATCAAGATTATTCGGGAAATCTGACT GAGTATAGTATACTCTGGGGTGGAGTTTGCATGGTAATTTACCCAGTCACCAACATTTTTGAAGGCATACTGATA TCAAGATAGTGTCTGGCAGGAGCAACAACCTTCTCATCTTTCATGGGTGTTCGATTCGCCCTTGGATTGGCTGAA GGTGCGGTCTCGCCTGCCTTTGTGACGCTCACCAGTCTCTGGTATAAGAAAAGCGAGCATCCCATGCGCATCGGG TAGGACATCCCTAATAATCCCCAATCTACCTTTTCTCTATCTAACCATCAAATTCTCAAACTAGTCTATGGATCA GCTGCAACGGGCTGGCTCAGGTCATCGGTGCTCTAATGATGTATGGTATCGGTCACAACACGGCATTGGCCATTG CCCAATGGAAAGCGATGTTCATCATCTGTGGAGCTCTCACAGTCTTCTTTGGAATCCTATTCTTCTTCTTGATGC CCGCTGGTCCCGACTCAGCGTGGTTCCTCACCCCCGAAGAGCGACAGGTAGCAACACAACGATTGCGAGCGGAAA CCGAAGGAGGAGACCAGACAACTTTCTCTATCTCACAATTGAAAGAGACAGCTATGGATATCAGAGCGTATTTGA GTTTCCTATTTGGGCTTCTCATCACACTACCTTCGCCAGTCATTGCAGTAAGTAGCGTATTCTCTTACAAGAAGA CATGTGTGCAATTACTGACTATACCCCGGTGATAGTTCGCTTCCCTTATCATCTACTCTTTGGGCTACACAAATT TCGATACCATGCTATACACTTCACCAGCAGGTGCAGTTCAGATGGTCTTTATTTGGGTCGGAATAGGTCTCTGCT ATATTTGGCCGAATCGTCGATGTGCGATCACCATCGGGCTTACAATCATCCCGCTCGTCGGAATCATTCTACTAT TCACGCTTCCCTTGTCCTCGGGATGGGGTATGATTGTTGCATCGTGGTTGGTATGTAAATTGGCTCAACCTACAC CCTCGTACTTGTACTGAATTTTGCTAATTCTTGTTTTAAAAAGGCCTCCGTCATCTCAAACATCTTAACGGTCAT CCTCAGTCTAAACGCTTCCAATATTCGTGGAAATACCAAAAAGGCCATCGTCAACGCTTTGTTCTTCGTTGGCTA CGCTATCGGTGCTATAGTTGGACCATTACTCTGGAACACGAAAAATGCACCCCGGTATCGCAGTGGTCTCGTCTT GGCTCTGGTTAGCTGGCTTGTGTTCATTCCGACCGTCGGAGTGTATTGGTTCACGTGTGCTCGTGACAATAAACG TCGGTCTACAATGGGGATGGATATCTTCGAGTACGCGGAGGAGGTCACTGGAAAGGACTTGACAGACAAGGAAGA CAAGAATTTCCGGTATAACCTTTGA |