© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g1165.t1 |
| Gene name | |
| Location | scaffold_01:3077252..3078950 |
| Strand | + |
| Gene length (bp) | 1698 |
| Transcript length (bp) | 1233 |
| Coding sequence length (bp) | 1233 |
| Protein length (aa) | 411 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01066 | CDP-OH_P_transf | CDP-alcohol phosphatidyltransferase | 4.8E-11 | 47 | 179 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016780 | phosphotransferase activity, for other substituted phosphate groups | Yes |
| GO:0008654 | phospholipid biosynthetic process | Yes |
| GO:0016020 | membrane | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0006629 | lipid metabolic process | No |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups | No |
| GO:0008150 | biological_process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:0016740 | transferase activity | No |
| GO:0090407 | organophosphate biosynthetic process | No |
| GO:0008152 | metabolic process | No |
| GO:0006793 | phosphorus metabolic process | No |
| GO:0006796 | phosphate-containing compound metabolic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0003674 | molecular_function | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0044255 | cellular lipid metabolic process | No |
| GO:0019637 | organophosphate metabolic process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0006644 | phospholipid metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008610 | lipid biosynthetic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 43 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 47 | 69 | 22 |
| 2 | 138 | 160 | 22 |
| 3 | 167 | 189 | 22 |
| 4 | 224 | 246 | 22 |
| 5 | 259 | 281 | 22 |
| 6 | 291 | 310 | 19 |
| 7 | 323 | 345 | 22 |
| 8 | 355 | 377 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1165.t1 MVYIRQHELANLKNYKYAGVDHSPVSRLILKPFYNKFVIRCFPMGMAPNAITLTGFMFVVINFVTVMWYNPNLDT DCPPWVYASCAIGLFLYQTFDAVDGMQARRTRQSGPLGELFDHSVDACNTGLSVLVFASAMNMGQSWMTFIALFG STITFYVQTWDEYYTQILTLGVISGPVEGILTLCTVYLFTAYMGGGSFWHQSMLETIGVPKPSFLSSQVYNMPFT QWYLVYGSVVLCFAIGSSIMHVMKVRRERGQDPFTPLYGLLPLVAIWSPIFAYLYLQPMILENYTIPFGLFVSLV NAYSVGRIIIGHLTQTSFPYQNVLLYPLALGVLDSAGALFGLWSAPVLGYGVGQVAFVFGLLGLAVGIYGSFVFD IITTICDYVDIWCLTIKYPFVEETERKTGLSKKTK* |
| Coding | >Pro_DTO377G3_2|g1165.t1 ATGGTGTACATCCGGCAACATGAATTGGCGAATCTGAAGAACTACAAATATGCTGGAGTCGACCACTCGCCTGTC AGCCGGTTGATTCTCAAGCCGTTCTACAACAAATTCGTGATTCGTTGCTTCCCAATGGGGATGGCACCCAATGCC ATCACCCTCACCGGCTTCATGTTTGTGGTAATTAATTTCGTCACCGTCATGTGGTACAACCCGAACTTGGATACG GACTGCCCGCCCTGGGTCTATGCCAGTTGTGCGATTGGCTTGTTCCTGTACCAGACTTTCGATGCCGTAGATGGC ATGCAGGCACGGAGAACCAGACAGAGTGGCCCGCTTGGCGAACTCTTTGATCACAGTGTCGATGCATGCAACACC GGTCTCAGCGTCTTGGTCTTCGCTTCGGCAATGAACATGGGCCAGTCCTGGATGACCTTTATCGCTCTATTCGGA TCAACAATCACCTTCTATGTTCAGACATGGGATGAATACTACACGCAAATCCTTACCTTGGGCGTGATCTCTGGC CCCGTTGAGGGAATCCTCACACTTTGCACCGTCTACCTATTCACCGCTTACATGGGTGGCGGTAGTTTCTGGCAC CAGTCCATGCTGGAGACCATCGGCGTGCCGAAGCCTAGCTTCCTCTCAAGCCAGGTGTACAACATGCCGTTCACG CAGTGGTACCTTGTGTATGGCTCCGTTGTGCTCTGCTTCGCCATCGGCTCGAGTATCATGCACGTCATGAAGGTG CGTCGCGAGCGAGGCCAGGACCCCTTCACGCCGCTGTACGGCCTCCTGCCCTTGGTGGCCATCTGGAGTCCCATT TTTGCCTACCTATACCTGCAGCCGATGATTTTGGAGAACTACACCATCCCCTTCGGATTGTTTGTGAGTCTCGTC AATGCCTACTCTGTTGGCCGCATTATCATCGGCCACCTCACTCAGACGAGTTTCCCCTACCAAAACGTCCTGCTG TACCCGCTCGCTCTGGGTGTTTTGGACAGCGCGGGTGCGCTGTTCGGCTTGTGGTCCGCCCCTGTGCTTGGGTAT GGTGTTGGGCAGGTGGCATTCGTGTTCGGGTTATTGGGACTGGCTGTCGGTATATACGGTAGCTTCGTGTTCGAC ATCATCACCACGATATGCGACTATGTCGATATCTGGTGCCTCACGATCAAGTACCCCTTCGTCGAGGAGACCGAG CGCAAGACCGGTTTGTCGAAGAAGACCAAATAA |
| Transcript | >Pro_DTO377G3_2|g1165.t1 ATGGTGTACATCCGGCAACATGAATTGGCGAATCTGAAGAACTACAAATATGCTGGAGTCGACCACTCGCCTGTC AGCCGGTTGATTCTCAAGCCGTTCTACAACAAATTCGTGATTCGTTGCTTCCCAATGGGGATGGCACCCAATGCC ATCACCCTCACCGGCTTCATGTTTGTGGTAATTAATTTCGTCACCGTCATGTGGTACAACCCGAACTTGGATACG GACTGCCCGCCCTGGGTCTATGCCAGTTGTGCGATTGGCTTGTTCCTGTACCAGACTTTCGATGCCGTAGATGGC ATGCAGGCACGGAGAACCAGACAGAGTGGCCCGCTTGGCGAACTCTTTGATCACAGTGTCGATGCATGCAACACC GGTCTCAGCGTCTTGGTCTTCGCTTCGGCAATGAACATGGGCCAGTCCTGGATGACCTTTATCGCTCTATTCGGA TCAACAATCACCTTCTATGTTCAGACATGGGATGAATACTACACGCAAATCCTTACCTTGGGCGTGATCTCTGGC CCCGTTGAGGGAATCCTCACACTTTGCACCGTCTACCTATTCACCGCTTACATGGGTGGCGGTAGTTTCTGGCAC CAGTCCATGCTGGAGACCATCGGCGTGCCGAAGCCTAGCTTCCTCTCAAGCCAGGTGTACAACATGCCGTTCACG CAGTGGTACCTTGTGTATGGCTCCGTTGTGCTCTGCTTCGCCATCGGCTCGAGTATCATGCACGTCATGAAGGTG CGTCGCGAGCGAGGCCAGGACCCCTTCACGCCGCTGTACGGCCTCCTGCCCTTGGTGGCCATCTGGAGTCCCATT TTTGCCTACCTATACCTGCAGCCGATGATTTTGGAGAACTACACCATCCCCTTCGGATTGTTTGTGAGTCTCGTC AATGCCTACTCTGTTGGCCGCATTATCATCGGCCACCTCACTCAGACGAGTTTCCCCTACCAAAACGTCCTGCTG TACCCGCTCGCTCTGGGTGTTTTGGACAGCGCGGGTGCGCTGTTCGGCTTGTGGTCCGCCCCTGTGCTTGGGTAT GGTGTTGGGCAGGTGGCATTCGTGTTCGGGTTATTGGGACTGGCTGTCGGTATATACGGTAGCTTCGTGTTCGAC ATCATCACCACGATATGCGACTATGTCGATATCTGGTGCCTCACGATCAAGTACCCCTTCGTCGAGGAGACCGAG CGCAAGACCGGTTTGTCGAAGAAGACCAAATAA |
| Gene | >Pro_DTO377G3_2|g1165.t1 ATGGTGTACATCCGGCAACATGAATTGGCGAATCTGAAGAACTACAAATATGCTGGAGTCGACCACTCGCCTGTC AGCCGGTTGATTCTCAAGCCGTTCTACAACAAATTCGTGATTCGTTGCTTCCCAATGGGGATGGCGTGAGTATTT CCCTCTCCTTACTTTTCCCCGGACTATGCATGCATGGATTATAGATCCTCTGGAGGCCTTTTTTTGAATACCGAG ACGAACTATACGCAACGCAACATGGAACATGGCTGACTTTATTCTTCTTTCTGCGCGTCTACAGACCCAATGCCG TAAGTCTTGCCCATGAGACATTGTTACAATTGCCACGTATAAGAAAAATATCCTAATCTCGCTCGCTTCGGTAGA TCACCCTCACCGGCTTCATGTTTGTGGTAATTAATTTCGTCACCGTCATGTGGTACAACCCGAACTTGGATACGG ACTGCCCGCCCTGGGTCTATGCCAGTTGTGCGATTGGCTTGTTCCTGTACCAGACTTTCGATGCCGTAGATGGCA TGCAGGCGTATGTCTACACTTATCCTGACAGTTGAGGTGCTTTAGATACTGACTGCGTTTAGACGGAGAACCAGA CAGAGTGGCCCGCTTGGCGAACTCTTTGATCACAGTGAGTTACTGAATATAGTACACAAAAGGCCAAGTTCATGG ATTGCTAATTACTTGTTTCTACGTTACTAGGTGTCGATGCATGCAACACCGGTCTCAGCGTCTTGGTCTTCGCTT CGGCAATGAACATGGGCCAGTCCTGGATGACCTTTATCGCTCTATTCGGATGTAAGCCCAGCCCTGCCCTGCCCT TCCACGCATAAATAGTCTCTGACAATCGTAGCAACAATCACCTTCTATGTTCAGACATGGGATGAATACTACACG CAAATCCTTACCTTGGGCGTGATCTCTGGCCCCGTTGAGGGAATCCTCACACTTTGCACCGTCTACCTATTCACC GCTTACATGGGTGGCGGTAGTTTCTGGCACCAGTCCATGCTGGAGACCATCGGCGTGCCGAAGCCTAGCTTCCTC TCAAGCCAGGTGTACAACATGCCGTTCACGCAGTGGTACCTTGTGTATGGCTCCGTTGTGCTCTGCTTCGCCATC GGCTCGAGTATCATGCACGTCATGAAGGTGCGTCGCGAGCGAGGCCAGGACCCCTTCACGCCGCTGTACGGCCTC CTGCCCTTGGTGGCCATCTGGAGTCCCATTTTTGCCTACCTATACCTGCAGCCGATGATTTTGGAGAACTACACC ATCCCCTTCGGATTGTTTGTGAGTCTCGTCAATGCCTACTCTGTTGGCCGCATTATCATCGGCCACCTCACTCAG ACGAGTTTCCCCTACCAAAACGTCCTGCTGTACCCGCTCGCTCTGGGTGTTTTGGACAGCGCGGGTGCGCTGTTC GGCTTGTGGTCCGCCCCTGTGCTTGGGTATGGTGTTGGGCAGGTGGCATTCGTGTTCGGGTTATTGGGACTGGCT GTCGGTATATACGGTAGCTTCGTGGTATGTTTCCTTCATGTTTCCCCTCCGCGCGACAATTTGCTGATCTTGATT TTCTTCCAGTTCGACATCATCACCACGATATGCGACTATGTCGATATCTGGTGCCTCACGATCAAGTACCCCTTC GTCGAGGAGACCGAGCGCAAGACCGGTTTGTCGAAGAAGACCAAATAA |