© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1147.t1 |
| Gene name | |
| Location | scaffold_01:3029942..3031133 |
| Strand | - |
| Gene length (bp) | 1191 |
| Transcript length (bp) | 783 |
| Coding sequence length (bp) | 783 |
| Protein length (aa) | 261 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00900 | Ribosomal_S4e | Ribosomal family S4e | 4.3E-37 | 94 | 168 |
| PF16121 | 40S_S4_C | 40S ribosomal protein S4 C-terminus | 1.3E-24 | 211 | 256 |
| PF08071 | RS4NT | RS4NT (NUC023) domain | 2.3E-16 | 2 | 38 |
| PF01479 | S4 | S4 domain | 6.1E-07 | 43 | 89 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1147.t1 MRGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKV RTDTTYPAGFMDVISLEKTGEHFRLIYDTKGRFTVHRIQAEEAEFKLCKVKRVQLGKGGIPFLVTHDARTIRYPD PAIKVNDTVKVDIATGKILDFVKFDTGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDALDNQFATRESNVF VIGQEKPWVSLPKGKGVKLSIAEERDRRRAHELAN* |
| Coding | >Pro_DTO377G3_2|g1147.t1 ATGCGCGGCCCCGGAAAGCACCAGAAGCGCCTCAGTGCGCCCTCGCACTGGCTCTTGGACAAAATGTCCGGAACC TATGCGCCCAAGGCCTCCCCCGGTCCTCACAAGCTCCGGGACTGCCTTCCTCTGATTGTCTTCATCCGTAACCGT CTCAAGTACGCCCTGAACGGTCGCGAGGTCAAGGCCATCATGATGCAGCGTCTGGTCAAGGTTGACGGCAAGGTC CGCACCGACACCACCTACCCCGCTGGATTCATGGACGTCATCTCCCTCGAGAAGACCGGCGAGCACTTCCGTCTC ATCTACGATACCAAGGGCCGTTTCACCGTCCACCGCATCCAGGCTGAGGAGGCTGAGTTCAAGCTCTGCAAGGTC AAGCGTGTTCAGCTCGGCAAGGGCGGGATCCCATTCTTGGTTACGCACGATGCGCGAACCATCCGCTACCCCGAC CCTGCCATCAAGGTCAACGACACCGTCAAGGTCGACATTGCCACTGGCAAGATCCTTGACTTCGTCAAGTTCGAT ACCGGTGTTGTCATCATGGCCACTGGTGGTCGCAACATGGGTCGTGTTGGTGTCATCACTCACCGTGAGCGTCAC GACGGTGGTTTCAACATCGTCCACGTTCGCGATGCTCTTGACAACCAGTTCGCTACCCGTGAGTCCAACGTCTTC GTCATTGGACAGGAGAAGCCTTGGGTTTCCCTCCCCAAGGGCAAGGGTGTCAAGCTCTCCATTGCTGAGGAGCGT GACCGCCGCCGTGCCCACGAGCTCGCCAACTAA |
| Transcript | >Pro_DTO377G3_2|g1147.t1 ATGCGCGGCCCCGGAAAGCACCAGAAGCGCCTCAGTGCGCCCTCGCACTGGCTCTTGGACAAAATGTCCGGAACC TATGCGCCCAAGGCCTCCCCCGGTCCTCACAAGCTCCGGGACTGCCTTCCTCTGATTGTCTTCATCCGTAACCGT CTCAAGTACGCCCTGAACGGTCGCGAGGTCAAGGCCATCATGATGCAGCGTCTGGTCAAGGTTGACGGCAAGGTC CGCACCGACACCACCTACCCCGCTGGATTCATGGACGTCATCTCCCTCGAGAAGACCGGCGAGCACTTCCGTCTC ATCTACGATACCAAGGGCCGTTTCACCGTCCACCGCATCCAGGCTGAGGAGGCTGAGTTCAAGCTCTGCAAGGTC AAGCGTGTTCAGCTCGGCAAGGGCGGGATCCCATTCTTGGTTACGCACGATGCGCGAACCATCCGCTACCCCGAC CCTGCCATCAAGGTCAACGACACCGTCAAGGTCGACATTGCCACTGGCAAGATCCTTGACTTCGTCAAGTTCGAT ACCGGTGTTGTCATCATGGCCACTGGTGGTCGCAACATGGGTCGTGTTGGTGTCATCACTCACCGTGAGCGTCAC GACGGTGGTTTCAACATCGTCCACGTTCGCGATGCTCTTGACAACCAGTTCGCTACCCGTGAGTCCAACGTCTTC GTCATTGGACAGGAGAAGCCTTGGGTTTCCCTCCCCAAGGGCAAGGGTGTCAAGCTCTCCATTGCTGAGGAGCGT GACCGCCGCCGTGCCCACGAGCTCGCCAACTAA |
| Gene | >Pro_DTO377G3_2|g1147.t1 ATGCGCGGCCCGTAAGTATCATGAGATCGCCCTCTACATCACTATTCAGCACACTGGTCTCGTCTATCTGCCGGA TTACGAGTTCAGCCAGTCCCTGCGAGAGTGATCAAAAATTTCTCGAAATGGAACACCATCACTAACAAGAATGTC TTTTGCAGCGGAAAGCACCAGAAGCGCCTCAGTGCGCCCTCGCACTGGCTCTTGGACAAAATGTCCGGAACCTAT GCGCCCAAGGCCTCCCCCGGTCCTCACAAGCTCCGGGACTGCCTTCCTCTGATTGTCTTCATCCGTAACCGGTAC GCACGCGACACCTTGAATATCTCGGCACGCGACGAACAATCACTAACATCTCTTTGCTGATAGTCTCAAGTACGC CCTGAACGGTCGCGAGGTCAAGGCCATCATGATGCAGCGTCTGGTCAAGGTTGACGGCAAGGTCCGCACCGACAC CACCTACCCCGCTGGATTCATGGACGTCATCTCCCTCGAGAAGACCGGCGAGCACTTCCGTCTCATCTACGATAC CAAGGGCCGTTTCACCGTCCACCGCATCCAGGCTGAGGAGGCTGAGTTCAAGCTCTGCAAGGTCAAGCGTGTTCA GCTCGGCAAGGGCGGGATCCCATTCTTGGTTACGCACGATGCGCGAACGTGAGTTCCACACTCCACAAGTTCCGT GTCATTCAGTCGTTGGACCAAGCTTTGGTTGATCGGCAGAGGACAATGGAAACAGTAAGATCCCATTAGATCAGG ACATGGTTTTGCTAACTTGCGTTTGCTCTCTACAGCATCCGCTACCCCGACCCTGCCATCAAGGTCAACGACACC GTCAAGGTCGACATTGCCACTGGCAAGATCCTTGACTTCGTCAAGTTCGATACCGGTGTTGTCATCATGGCCACT GGTGGTCGCAACATGGGTCGTGTTGGTGTCATCACTCACCGTGAGCGTCACGACGGTGGTTTCAACATCGTCCAC GTTCGCGATGCTCTTGACAACCAGTTCGCTACCCGTGAGTCCAACGTCTTCGTCATTGGACAGGAGAAGCCTTGG GTTTCCCTCCCCAAGGGCAAGGGTGTCAAGGTATGTTATATTCCCTAATACTGTGTGTCTTTGAATTACCCTAAC ATTCTTTTCTAGCTCTCCATTGCTGAGGAGCGTGACCGCCGCCGTGCCCACGAGCTCGCCAACTAA |