© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1144.t1 |
| Gene name | |
| Location | scaffold_01:3020718..3022857 |
| Strand | - |
| Gene length (bp) | 2139 |
| Transcript length (bp) | 2028 |
| Coding sequence length (bp) | 2028 |
| Protein length (aa) | 676 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13921 | Myb_DNA-bind_6 | Myb-like DNA-binding domain | 1.4E-07 | 309 | 372 |
| PF13921 | Myb_DNA-bind_6 | Myb-like DNA-binding domain | 5.0E-07 | 485 | 534 |
| PF00249 | Myb_DNA-binding | Myb-like DNA-binding domain | 4.3E-08 | 308 | 354 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 48.65 | 29.63 | 67.68 |
| 5d_25C | Five days - 25 degrees Celsius | 54.38 | 33.05 | 75.70 |
| 7d_25C | Seven days - 25 degrees Celsius | 54.06 | 32.81 | 75.31 |
| 10d_25C | Ten days - 25 degrees Celsius | 64.02 | 39.04 | 89.00 |
| 7d_15C | Seven days - 15 degrees Celsius | 66.72 | 40.26 | 93.18 |
| 7d_30C | Seven days - 30 degrees Celsius | 46.13 | 27.99 | 64.27 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.696332 | no |
| 3d_25C | 7d_25C | 0.718100 | no |
| 3d_25C | 7d_15C | 0.166494 | no |
| 3d_25C | 7d_30C | 0.871704 | no |
| 3d_25C | 10d_25C | 0.232119 | no |
| 5d_25C | 7d_25C | 0.986590 | no |
| 5d_25C | 7d_15C | 0.415969 | no |
| 5d_25C | 7d_30C | 0.534461 | no |
| 5d_25C | 10d_25C | 0.529466 | no |
| 7d_25C | 7d_15C | 0.393882 | no |
| 7d_25C | 7d_30C | 0.548877 | no |
| 7d_25C | 10d_25C | 0.506558 | no |
| 7d_15C | 7d_30C | 0.090767 | no |
| 7d_15C | 10d_25C | 0.905056 | no |
| 7d_30C | 10d_25C | 0.137144 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1144.t1 MESASALRPLDESILRELPQLSLRIAPLREPVSSRTLSVPSPLEPNASGTREPNNIPNSNSNSGKIPANAKAGLP TVTEFLNAARIRKTELSADSQSNVERPPRPILPAFVNLRALEKFPFSSSFDDDALQGPRKRRRRDPQADSFSEHL QLPIPQAQKEQRPPPFGPFAILNGLNEPPPNAALLPPIEAGSNISQLLTKPSRGGAAVDPGTLVAAHVAISDGQS AAERRDTRLEDILRMSLNVDEDDDPNDNDENVESTNPMDPDEIALAVRKAEDPKNTKALPLHSGQDVPISPKTRG RSRKNVRKWTEEETATLLRGVVKCGIGNWTAILAQPELEFNQRTASNLKDRFRVLCPWAYRTSDPNEAAKQLHDT LANTLLKAKGEGSDETPGKPHLSHIMPSSQGSESISGAEGQAPNPQKPSTSSTVSSTPDTDPGSSSIPQSQSPSS GNSTPAPASKSQTTLASLGIPANVVKSKRRSRRPFTAVEDEALLKGYAVHGFQWTLIQQDSRLNLSHRKATDLRD RFRTKFPHAYRDGGSVNGKAFTNPNQGQGQDSAAGASTPRPHPVNTEQSPSKAYAMTPTPTPNSTTASRNSASRS RHAATPSQSSLGQIDPALLPPPPQSFSEHSMYLPPAAAGALSFSLDDGPGAGAASTVETPWEDNTLAPMIWDELT * |
| Coding | >Pro_DTO377G3_2|g1144.t1 ATGGAATCTGCGAGCGCTTTGCGGCCCCTCGATGAATCAATACTCCGCGAACTCCCCCAACTCTCTCTCCGTATC GCCCCTCTACGAGAACCAGTATCATCACGAACCTTAAGCGTCCCATCGCCCCTCGAACCCAATGCCAGTGGGACA CGGGAGCCGAATAATATCCCCAATTCAAACAGCAATAGCGGGAAGATCCCAGCAAATGCAAAAGCAGGCCTGCCG ACCGTTACGGAGTTTCTGAACGCTGCGCGCATCAGGAAAACCGAACTGTCAGCAGACTCGCAGTCGAATGTGGAA CGTCCCCCAAGGCCAATCCTTCCCGCTTTTGTGAATCTTCGTGCCCTGGAAAAGTTTCCATTCTCGTCATCCTTC GATGACGACGCCCTCCAAGGGCCTCGCAAGCGTCGACGCCGAGACCCCCAGGCTGATTCGTTCAGCGAGCATCTA CAGTTACCTATCCCCCAGGCCCAGAAGGAGCAGCGACCTCCTCCATTTGGGCCATTTGCTATCCTGAATGGATTG AATGAGCCTCCACCTAATGCCGCCTTGCTTCCACCTATTGAGGCTGGGTCTAATATCTCCCAGCTTTTGACTAAG CCCTCCAGAGGCGGTGCTGCTGTTGACCCTGGGACGCTAGTTGCTGCTCATGTCGCGATCTCAGATGGACAGTCT GCTGCTGAAAGACGAGATACTAGACTCGAGGATATCCTCAGAATGTCTCTCAATGTGGATGAAGACGACGACCCT AATGATAATGATGAAAATGTTGAAAGTACTAACCCCATGGATCCTGATGAGATTGCCCTGGCTGTTCGCAAAGCA GAGGATCCCAAGAACACTAAGGCATTGCCACTTCACTCTGGACAGGATGTGCCAATTTCTCCCAAAACTCGTGGC CGGTCCCGTAAAAACGTGAGAAAGTGGACCGAAGAAGAAACGGCTACTTTACTTCGGGGTGTGGTCAAATGTGGG ATTGGCAACTGGACTGCTATCCTTGCTCAACCGGAGCTGGAGTTTAATCAGCGAACTGCCTCAAATTTAAAAGAC AGATTCCGAGTATTATGTCCATGGGCGTACCGTACATCCGATCCCAATGAAGCTGCGAAACAACTACATGACACT CTCGCTAACACCCTACTCAAAGCCAAAGGAGAGGGCTCTGACGAAACACCCGGCAAACCCCACCTCTCCCATATA ATGCCCTCGAGTCAAGGCTCCGAGTCAATCTCTGGAGCAGAAGGCCAGGCTCCCAATCCACAAAAACCCTCTACT TCGAGTACCGTCTCATCCACGCCCGACACAGATCCCGGGAGTAGTAGCATCCCCCAATCGCAGTCGCCCTCATCG GGAAATAGCACACCCGCTCCCGCGAGCAAGTCCCAGACAACCCTCGCATCTCTTGGAATTCCCGCAAATGTCGTA AAATCTAAACGTCGCTCTCGGCGACCCTTCACAGCCGTCGAAGACGAAGCCCTCCTCAAAGGCTACGCCGTACAC GGCTTCCAATGGACTCTAATCCAGCAAGATTCCCGATTGAACCTAAGCCACCGCAAAGCAACAGACCTCCGCGAC CGCTTTAGAACCAAGTTCCCACACGCCTATCGTGATGGTGGCTCTGTGAATGGAAAGGCCTTTACCAACCCAAAC CAGGGCCAGGGCCAGGATTCGGCTGCAGGCGCGTCGACCCCCCGCCCACATCCTGTCAACACCGAACAATCTCCA AGCAAGGCCTATGCCATGACGCCAACTCCAACTCCGAATTCGACTACCGCTTCTCGCAACTCGGCGTCGAGGAGT CGTCACGCTGCTACCCCTTCGCAGTCCAGTCTTGGCCAGATTGATCCCGCGCTCTTGCCTCCGCCTCCGCAGAGC TTTTCGGAGCACTCGATGTATCTTCCGCCTGCTGCTGCCGGTGCGCTTTCTTTCTCTTTGGATGATGGACCTGGG GCGGGTGCTGCTTCCACGGTGGAGACGCCGTGGGAAGATAATACCCTCGCTCCTATGATTTGGGATGAATTGACC TAA |
| Transcript | >Pro_DTO377G3_2|g1144.t1 ATGGAATCTGCGAGCGCTTTGCGGCCCCTCGATGAATCAATACTCCGCGAACTCCCCCAACTCTCTCTCCGTATC GCCCCTCTACGAGAACCAGTATCATCACGAACCTTAAGCGTCCCATCGCCCCTCGAACCCAATGCCAGTGGGACA CGGGAGCCGAATAATATCCCCAATTCAAACAGCAATAGCGGGAAGATCCCAGCAAATGCAAAAGCAGGCCTGCCG ACCGTTACGGAGTTTCTGAACGCTGCGCGCATCAGGAAAACCGAACTGTCAGCAGACTCGCAGTCGAATGTGGAA CGTCCCCCAAGGCCAATCCTTCCCGCTTTTGTGAATCTTCGTGCCCTGGAAAAGTTTCCATTCTCGTCATCCTTC GATGACGACGCCCTCCAAGGGCCTCGCAAGCGTCGACGCCGAGACCCCCAGGCTGATTCGTTCAGCGAGCATCTA CAGTTACCTATCCCCCAGGCCCAGAAGGAGCAGCGACCTCCTCCATTTGGGCCATTTGCTATCCTGAATGGATTG AATGAGCCTCCACCTAATGCCGCCTTGCTTCCACCTATTGAGGCTGGGTCTAATATCTCCCAGCTTTTGACTAAG CCCTCCAGAGGCGGTGCTGCTGTTGACCCTGGGACGCTAGTTGCTGCTCATGTCGCGATCTCAGATGGACAGTCT GCTGCTGAAAGACGAGATACTAGACTCGAGGATATCCTCAGAATGTCTCTCAATGTGGATGAAGACGACGACCCT AATGATAATGATGAAAATGTTGAAAGTACTAACCCCATGGATCCTGATGAGATTGCCCTGGCTGTTCGCAAAGCA GAGGATCCCAAGAACACTAAGGCATTGCCACTTCACTCTGGACAGGATGTGCCAATTTCTCCCAAAACTCGTGGC CGGTCCCGTAAAAACGTGAGAAAGTGGACCGAAGAAGAAACGGCTACTTTACTTCGGGGTGTGGTCAAATGTGGG ATTGGCAACTGGACTGCTATCCTTGCTCAACCGGAGCTGGAGTTTAATCAGCGAACTGCCTCAAATTTAAAAGAC AGATTCCGAGTATTATGTCCATGGGCGTACCGTACATCCGATCCCAATGAAGCTGCGAAACAACTACATGACACT CTCGCTAACACCCTACTCAAAGCCAAAGGAGAGGGCTCTGACGAAACACCCGGCAAACCCCACCTCTCCCATATA ATGCCCTCGAGTCAAGGCTCCGAGTCAATCTCTGGAGCAGAAGGCCAGGCTCCCAATCCACAAAAACCCTCTACT TCGAGTACCGTCTCATCCACGCCCGACACAGATCCCGGGAGTAGTAGCATCCCCCAATCGCAGTCGCCCTCATCG GGAAATAGCACACCCGCTCCCGCGAGCAAGTCCCAGACAACCCTCGCATCTCTTGGAATTCCCGCAAATGTCGTA AAATCTAAACGTCGCTCTCGGCGACCCTTCACAGCCGTCGAAGACGAAGCCCTCCTCAAAGGCTACGCCGTACAC GGCTTCCAATGGACTCTAATCCAGCAAGATTCCCGATTGAACCTAAGCCACCGCAAAGCAACAGACCTCCGCGAC CGCTTTAGAACCAAGTTCCCACACGCCTATCGTGATGGTGGCTCTGTGAATGGAAAGGCCTTTACCAACCCAAAC CAGGGCCAGGGCCAGGATTCGGCTGCAGGCGCGTCGACCCCCCGCCCACATCCTGTCAACACCGAACAATCTCCA AGCAAGGCCTATGCCATGACGCCAACTCCAACTCCGAATTCGACTACCGCTTCTCGCAACTCGGCGTCGAGGAGT CGTCACGCTGCTACCCCTTCGCAGTCCAGTCTTGGCCAGATTGATCCCGCGCTCTTGCCTCCGCCTCCGCAGAGC TTTTCGGAGCACTCGATGTATCTTCCGCCTGCTGCTGCCGGTGCGCTTTCTTTCTCTTTGGATGATGGACCTGGG GCGGGTGCTGCTTCCACGGTGGAGACGCCGTGGGAAGATAATACCCTCGCTCCTATGATTTGGGATGAATTGACC TAA |
| Gene | >Pro_DTO377G3_2|g1144.t1 ATGGAATCTGCGAGCGCTTTGCGGCCCCTCGATGAATCAATACTCCGCGAACTCCCCCAACTCTCTCTCCGTATC GCCCCTCTACGAGAACCAGTATCATCACGAACCTTAAGCGTCCCATCGCCCCTCGAACCCAATGCCAGTGGGACA CGGGAGCCGAATAATATCCCCAATTCAAACAGCAATAGCGGGAAGATCCCAGCAAATGCAAAAGCAGGCCTGCCG ACCGTTACGGAGTTTCTGAACGCTGCGCGCATCAGGAAAACCGAACTGTCAGCAGACTCGCAGTCGAATGTGGAA CGTCCCCCAAGGCCAATCCTTCCCGCTTTTGTGAATCTTCGTGCCCTGGAAAAGTTTCCATTCTCGTCATCCTTC GATGACGACGCCCTCCAAGGGCCTCGCAAGCGTCGACGCCGAGACCCCCAGGCTGATTCGTTCAGCGAGCATCTA CAGTTACCTATCCCCCAGGCCCAGAAGGAGCAGCGACCTCCTCCATTTGGGCCATTTGCTATCCTGAATGGATTG AATGAGCCTCCACCTAATGCCGCCTTGCTTCCACCTATTGAGGCTGGGTCTAATATCTCCCAGCTTTTGACTAAG CCCTCCAGAGGCGGTGCTGCTGTTGACCCTGGGACGCTAGTTGCTGCTCATGTCGCGATCTCAGATGGACAGTCT GCTGCTGAAAGACGAGATACTAGACTCGAGGATATCCTCAGAATGTCTCTCAATGTGGATGAAGACGACGACCCT AATGATAATGATGAAAATGTTGAAAGTACTAACCCCATGGATCCTGATGAGATTGCCCTGGCTGTTCGCAAAGCA GAGGATCCCAAGAACACTAAGGCATTGCCACTTCACTCTGGACAGGATGTGCCAATTTCTCCCAAAACTCGTGGC CGGTCCCGTAAAAACGTGAGAAAGTGGACCGAAGAAGAAACGGCTACTTTACTTCGGGGTGTGGTCAAATGTGGG ATTGGCAACTGGACTGCTATCCTTGCTCAACCGGAGCTGGAGTTTAATCAGCGAACTGCCTCAAATTTAAAAGAC AGGTATGCTTGTTATTGGCCAACTGTATGGTATTATGCTAAAGTTTCGTCATGAAGATTCCGAGTATTATGTCCA TGGGCGTACCGGTAAGCAATTAGAATTCAATCCTCTGAAGTCAACTAGGATAGCTAATATTACTCCAGTACATCC GATCCCAATGAAGCTGCGAAACAACTACATGACACTCTCGCTAACACCCTACTCAAAGCCAAAGGAGAGGGCTCT GACGAAACACCCGGCAAACCCCACCTCTCCCATATAATGCCCTCGAGTCAAGGCTCCGAGTCAATCTCTGGAGCA GAAGGCCAGGCTCCCAATCCACAAAAACCCTCTACTTCGAGTACCGTCTCATCCACGCCCGACACAGATCCCGGG AGTAGTAGCATCCCCCAATCGCAGTCGCCCTCATCGGGAAATAGCACACCCGCTCCCGCGAGCAAGTCCCAGACA ACCCTCGCATCTCTTGGAATTCCCGCAAATGTCGTAAAATCTAAACGTCGCTCTCGGCGACCCTTCACAGCCGTC GAAGACGAAGCCCTCCTCAAAGGCTACGCCGTACACGGCTTCCAATGGACTCTAATCCAGCAAGATTCCCGATTG AACCTAAGCCACCGCAAAGCAACAGACCTCCGCGACCGCTTTAGAACCAAGTTCCCACACGCCTATCGTGATGGT GGCTCTGTGAATGGAAAGGCCTTTACCAACCCAAACCAGGGCCAGGGCCAGGATTCGGCTGCAGGCGCGTCGACC CCCCGCCCACATCCTGTCAACACCGAACAATCTCCAAGCAAGGCCTATGCCATGACGCCAACTCCAACTCCGAAT TCGACTACCGCTTCTCGCAACTCGGCGTCGAGGAGTCGTCACGCTGCTACCCCTTCGCAGTCCAGTCTTGGCCAG ATTGATCCCGCGCTCTTGCCTCCGCCTCCGCAGAGCTTTTCGGAGCACTCGATGTATCTTCCGCCTGCTGCTGCC GGTGCGCTTTCTTTCTCTTTGGATGATGGACCTGGGGCGGGTGCTGCTTCCACGGTGGAGACGCCGTGGGAAGAT AATACCCTCGCTCCTATGATTTGGGATGAATTGACCTAA |