© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1140.t1 |
| Gene name | |
| Location | scaffold_01:3011555..3012893 |
| Strand | - |
| Gene length (bp) | 1338 |
| Transcript length (bp) | 1209 |
| Coding sequence length (bp) | 1209 |
| Protein length (aa) | 403 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 5.6E-05 | 110 | 176 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 69 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 66.61 | 40.07 | 93.15 |
| 5d_25C | Five days - 25 degrees Celsius | 82.85 | 50.44 | 115.26 |
| 7d_25C | Seven days - 25 degrees Celsius | 78.13 | 47.37 | 108.89 |
| 10d_25C | Ten days - 25 degrees Celsius | 103.02 | 62.71 | 143.32 |
| 7d_15C | Seven days - 15 degrees Celsius | 90.29 | 55.08 | 125.49 |
| 7d_30C | Seven days - 30 degrees Celsius | 108.92 | 66.79 | 151.05 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.378459 | no |
| 3d_25C | 7d_25C | 0.545446 | no |
| 3d_25C | 7d_15C | 0.184044 | no |
| 3d_25C | 7d_30C | 0.015268 | yes |
| 3d_25C | 10d_25C | 0.039986 | yes |
| 5d_25C | 7d_25C | 0.857739 | no |
| 5d_25C | 7d_15C | 0.779399 | no |
| 5d_25C | 7d_30C | 0.228516 | no |
| 5d_25C | 10d_25C | 0.371995 | no |
| 7d_25C | 7d_15C | 0.590917 | no |
| 7d_25C | 7d_30C | 0.126333 | no |
| 7d_25C | 10d_25C | 0.230547 | no |
| 7d_15C | 7d_30C | 0.453293 | no |
| 7d_15C | 10d_25C | 0.632252 | no |
| 7d_30C | 10d_25C | 0.858520 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1140.t1 MATDDDNFDIDIYGDGTYNANEPGDFKQDSELVLDAPENQPESGAGSSNAVKQETPAPAQTQQVNPANNNGAQPA PQQPALNHGLPAPPQGIKRKEYDDQSVDPDATTALLISELTWWTTEDEVRSWSNQVGVEGQLKDVTFSEHKVNGK SKGQAFVEFTTAQAATATKHNIERQNTPKRKYTVHYTSPHQNPFKTLPKDTPMRNAGGRGGGAVHNPNGNPNYGM NNHTGGFRGGRGGFGNRGMGGNMNNNFNNRNNFNPMGGFQGAAPNPMMGGFQGAPMGGMQNYGFNNRGNMMGGMR GGAGMRGGRGGNMGGAPMMGMPGMTPPMGGMGMNPMAGMNPMMGGGMPGGMGGNMPMQGQQGFQGPNPGFNQGYY NPNPNNQAGGADAGSWNPHGAKRSRQD* |
| Coding | >Pro_DTO377G3_2|g1140.t1 ATGGCTACCGACGACGATAACTTCGACATTGACATCTACGGCGACGGCACTTACAATGCCAATGAGCCCGGAGAT TTCAAGCAGGATTCCGAGCTTGTTCTGGATGCTCCCGAGAACCAGCCCGAGTCCGGCGCCGGATCATCCAACGCC GTCAAGCAGGAGACCCCTGCTCCCGCTCAGACCCAGCAGGTGAACCCGGCGAACAACAATGGAGCTCAGCCAGCA CCTCAGCAGCCCGCACTCAACCACGGTCTGCCTGCTCCCCCCCAGGGAATCAAGCGCAAGGAATACGATGATCAA TCCGTGGATCCCGATGCCACCACTGCGTTGCTGATTTCTGAATTGACCTGGTGGACAACTGAGGACGAAGTCCGA AGCTGGTCGAATCAGGTCGGAGTTGAGGGCCAGCTGAAGGATGTGACCTTCAGCGAGCACAAGGTGAACGGCAAG AGCAAGGGTCAAGCATTTGTTGAGTTCACCACGGCTCAGGCGGCGACTGCAACTAAGCACAACATTGAGAGACAA AATACCCCCAAGCGCAAGTACACCGTTCACTACACCAGCCCTCACCAGAATCCCTTCAAGACCCTCCCCAAGGAT ACCCCGATGCGCAATGCCGGCGGTCGCGGCGGTGGTGCTGTCCACAACCCTAATGGCAACCCCAACTACGGCATG AACAACCACACTGGCGGATTCCGCGGCGGCCGAGGCGGCTTCGGCAACCGCGGCATGGGCGGTAACATGAACAAC AACTTCAATAACCGCAACAACTTCAATCCCATGGGTGGATTCCAAGGTGCCGCGCCCAACCCCATGATGGGTGGC TTCCAGGGCGCCCCGATGGGGGGCATGCAGAACTACGGATTTAACAATCGCGGCAACATGATGGGTGGCATGCGC GGCGGTGCTGGTATGCGTGGCGGTCGTGGTGGAAACATGGGCGGTGCTCCGATGATGGGTATGCCTGGTATGACT CCCCCCATGGGTGGCATGGGCATGAACCCGATGGCTGGTATGAATCCCATGATGGGTGGCGGCATGCCCGGTGGC ATGGGAGGCAACATGCCAATGCAAGGACAACAAGGTTTCCAGGGCCCCAACCCCGGATTCAATCAGGGCTACTAC AACCCTAACCCCAACAACCAGGCTGGTGGCGCCGACGCAGGTTCTTGGAACCCCCACGGCGCGAAGCGTAGCCGC CAAGACTAA |
| Transcript | >Pro_DTO377G3_2|g1140.t1 ATGGCTACCGACGACGATAACTTCGACATTGACATCTACGGCGACGGCACTTACAATGCCAATGAGCCCGGAGAT TTCAAGCAGGATTCCGAGCTTGTTCTGGATGCTCCCGAGAACCAGCCCGAGTCCGGCGCCGGATCATCCAACGCC GTCAAGCAGGAGACCCCTGCTCCCGCTCAGACCCAGCAGGTGAACCCGGCGAACAACAATGGAGCTCAGCCAGCA CCTCAGCAGCCCGCACTCAACCACGGTCTGCCTGCTCCCCCCCAGGGAATCAAGCGCAAGGAATACGATGATCAA TCCGTGGATCCCGATGCCACCACTGCGTTGCTGATTTCTGAATTGACCTGGTGGACAACTGAGGACGAAGTCCGA AGCTGGTCGAATCAGGTCGGAGTTGAGGGCCAGCTGAAGGATGTGACCTTCAGCGAGCACAAGGTGAACGGCAAG AGCAAGGGTCAAGCATTTGTTGAGTTCACCACGGCTCAGGCGGCGACTGCAACTAAGCACAACATTGAGAGACAA AATACCCCCAAGCGCAAGTACACCGTTCACTACACCAGCCCTCACCAGAATCCCTTCAAGACCCTCCCCAAGGAT ACCCCGATGCGCAATGCCGGCGGTCGCGGCGGTGGTGCTGTCCACAACCCTAATGGCAACCCCAACTACGGCATG AACAACCACACTGGCGGATTCCGCGGCGGCCGAGGCGGCTTCGGCAACCGCGGCATGGGCGGTAACATGAACAAC AACTTCAATAACCGCAACAACTTCAATCCCATGGGTGGATTCCAAGGTGCCGCGCCCAACCCCATGATGGGTGGC TTCCAGGGCGCCCCGATGGGGGGCATGCAGAACTACGGATTTAACAATCGCGGCAACATGATGGGTGGCATGCGC GGCGGTGCTGGTATGCGTGGCGGTCGTGGTGGAAACATGGGCGGTGCTCCGATGATGGGTATGCCTGGTATGACT CCCCCCATGGGTGGCATGGGCATGAACCCGATGGCTGGTATGAATCCCATGATGGGTGGCGGCATGCCCGGTGGC ATGGGAGGCAACATGCCAATGCAAGGACAACAAGGTTTCCAGGGCCCCAACCCCGGATTCAATCAGGGCTACTAC AACCCTAACCCCAACAACCAGGCTGGTGGCGCCGACGCAGGTTCTTGGAACCCCCACGGCGCGAAGCGTAGCCGC CAAGACTAA |
| Gene | >Pro_DTO377G3_2|g1140.t1 ATGGCTACCGACGACGATAACTTCGACATTGACATCTACGGCGACGGCACTTACAATGCCAATGAGCCCGGAGAT TTCAAGCAGGATTCCGAGCTTGTTCTGGATGCTCCCGAGAACCAGCCCGAGTCCGGCGCCGGATCATCCAACGCC GTCAAGCAGGAGACCCCTGCTCCCGCTCAGACCCAGCAGGTGAACCCGGCGAACAACAATGGAGCTCAGCCAGCA CCTCAGCAGCCCGCACTCAACCACGGTCTGCCTGCTCCCCCCCAGGGAATCAAGCGCAAGGAATACGATGATCAA TCCGTGGATCCCGATGCCACCACTGCGTTGCTGATTTCTGAATTGACCTGGTGGACAACTGAGGACGAAGTCCGA AGCTGGTCGAATCAGGTCGGAGTTGAGGGCCAGCTGAAGGATGTGACCTTCAGCGAGCACAAGGTGAACGGCAAG AGCAAGGGGTAAGAACATCACAGACTTGGTTGTGAACAAATACGATGCCGAGCATTGATACTAACGTTCTCACAG TCAAGCATTTGTTGAGTTCACCACGGCTCAGGCGGCGACTGCAACTAAGCACAACATTGAGAGACAAAATACCCC CAAGCGCAAGTACACCGTTCACTACACCAGCCCTCACCAGAATCCCTTCAAGACCCTCCCCAAGGATACCCCGAT GCGCAATGCCGGCGGTCGCGGCGGTGGTGCTGTCCACAACCCTAATGGCAACCCCAACTACGGCATGAACAACCA CACTGGCGGATTCCGCGGCGGCCGAGGCGGCTTCGGCAACCGCGGCATGGGCGGTAACATGAACAACAACTTCAA TAACCGCAACAACTTCAATCCCATGGGTGGATTCCAAGGTGCCGCGCCCAACCCCATGATGGGTGGCTTCCAGGG CGCCCCGATGGGGGGCATGCAGAACTACGGATTTAACAATCGCGGCAACATGATGGGTGGCATGCGCGGCGGTGC TGGTATGCGTGGCGGTCGTGGTGGAAACATGGGCGGTGCTCCGATGATGGGTATGCCTGGTATGACTCCCCCCAT GGGTGGCATGGGCATGAACCCGATGGCTGGTATGAATCCCATGATGGGTGGCGGCATGCCCGGTGGCATGGGAGG CAACATGCCAATGCAAGGTAAGTGATTTTGGCATACACACTGATCGTTCTTTCCGTTCCTCAATACTGACAATCT CCAGGACAACAAGGTTTCCAGGGCCCCAACCCCGGATTCAATCAGGGCTACTACAACCCTAACCCCAACAACCAG GCTGGTGGCGCCGACGCAGGTTCTTGGAACCCCCACGGCGCGAAGCGTAGCCGCCAAGACTAA |